Command line: [exonerate -m p2g --showtargetgff -q SelKmexicanatota.fa -t mexicana_tall.fa]
Hostname: [ws101171.aulescm.upf.edu]

C4 Alignment:
------------
         Query: mex120l07.p1k:subseq(28929,2350) [translate(1)]
        Target: mex120l07.p1k:subseq(28929,2350) [revcomp]
         Model: protein2genome:local
     Raw score: 456
   Query range: 0 -> 94
  Target range: 1350 -> 990

    1 : MetAlaTyrIleHisAsnGlyArgValValGluLysLysProPheThrValGlnGlyPheLe :   21
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        MetAlaTyrIleHisAsnGlyArgValValGluLysLysProPheThrValGlnGlyPheLe
 1350 : ATGGCGTACATACACAATGGACGTGTCGTGGAGAAGAAGCCCTTCACGGTGCAGGGCTTTCT : 1290

   22 : uLeuAlaLeuTrpThrAlaLeuSerLeuPheAlaGlnThrLeuPheThrThrGlnProIleG :   42
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        uLeuAlaLeuTrpThrAlaLeuSerLeuPheAlaGlnThrLeuPheThrThrGlnProIleG
 1289 : CCTCGCGCTCTGGACCGCGCTCTCTCTCTTTGCACAGACGCTCTTCACGACCCAACCAATAG : 1227

   43 : lyGlnValValGluGluHisGlnHisProAlaProArgAla  >>>> Target Intron  :   56
        |||||||||||||||||||||||||||||||||||||||||            78 bp    
        lyGlnValValGluGluHisGlnHisProAlaProArgAla+-                   
 1226 : GACAGGTCGTAGAGGAGCACCAACACCCTGCGCCTCGGGCGgc................... : 1183

   57 : 1 >>>>  AlaLeuGlyGlyGlyArgAsnSerGlyTrpAlaAlaAlaValAsnArgArgGly :   73
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
              ++AlaLeuGlyGlyGlyArgAsnSerGlyTrpAlaAlaAlaValAsnArgArgGly
 1182 : ......agGCGCTCGGCGGCGGGAGGAATAGCGGCTGGGCTGCCGCCGTCAACCGCCGCGGT : 1056

   74 : GlyAsnValHisThrLeuProLysAlaProIleSerGlyGlyCysAlaSerGlyUnkGlyAr :   94
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
        GlyAsnValHisThrLeuProLysAlaProIleSerGlyGlyCysAlaSerGly***GlyAr
 1055 : GGCAACGTGCATACACTGCCTAAAGCACCGATTTCCGGTGGTTGCGCCTCTGGCTGAGGGAG :  993

   95 : g :   94
        |
        g
  992 : G :  991

vulgar: mex120l07.p1k:subseq(28929,2350) 0 94 . mex120l07.p1k:subseq(28929,2350) 1350 990 - 456 M 55 165 5 0 2 I 0 74 3 0 2 M 39 117
# --- START OF GFF DUMP ---
# // Modified & written by Authors.

#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-10
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	gene	991	1350	456	-	.	gene_id 1 ; sequence mex120l07.p1k:subseq(28929,2350) ; gene_orientation +
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	cds	1186	1350	.	-	.	
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	exon	1186	1350	.	-	.	insertions 0 ; deletions 0
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	splice5	1184	1185	.	-	.	intron_id 1 ; splice_site "GC"
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	intron	1108	1185	.	-	.	intron_id 1
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	splice3	1108	1109	.	-	.	intron_id 0 ; splice_site "AG"
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	cds	991	1107	.	-	.	
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	exon	991	1107	.	-	.	insertions 0 ; deletions 0
mex120l07.p1k:subseq(28929,2350)	exonerate:protein2genome:local	similarity	991	1350	456	-	.	alignment_id 1 ; Query mex120l07.p1k:subseq(28929,2350) ; Align 1351 1 165 ; Align 1108 56 117
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis