Command line: [exonerate -m p2g --showtargetgff -q SelKLbraziliensis.fa -t T.cruzi_tall.fa --exhaustive yes]
Hostname: [ws101156.aulescm.upf.edu]

C4 Alignment:
------------
         Query: selKLbraziliensisubseq(2352826,6353).[3001:3351].sp [translate(1)]
        Target: gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 112
   Query range: 0 -> 49
  Target range: 1260 -> 1113

    1 : MetAlaTyrIleHisAsnGlyArgValValGluLysLysProPheThrValArgGlyPheLe :   21
        ||| !!|||:!!   |||||||||||||||!!:..!|||||||||!:!:!!  !! !|||!!
        MetProTyrValAlaAsnGlyArgValValAspSerLysProPheSerLeuValAspPhePh
 1260 : ATGCCGTACGTTGCGAACGGCAGGGTCGTTGACTCGAAGCCGTTTAGTCTCGTCGACTTTTT : 1200

   22 : uLeuAlaPheTrpGlyMetLeuSerLeuPheAlaArgThrLeuPheThrThrGlnProMetT :   42
        !|||:!!.!!  ! !!:!::!!!!!||||||  !  !|||||| !!:!!:!!:!!|||:!::
        eLeuSerIleLeuArgLeuMetTrpLeuPhePheAlaThrLeuValSerSerGluProValS
 1199 : TCTCTCCATTCTGCGTCTCATGTGGCTGTTTTTTGCCACTCTTGTTTCCTCCGAGCCCGTCT : 1137

   43 : hrGlnValValGluGluTyrGln :   49
        !!|||  !|||:!!||||||::!
        erGlnHisValGlnGluTyrArg
 1136 : CGCAACACGTGCAGGAGTACAGA : 1114

vulgar: selKLbraziliensisubseq(2352826,6353).[3001:3351].sp 0 49 . gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) 1260 1113 - 112 M 49 147
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2010-03-09
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	gene	1114	1260	112	-	.	gene_id 1 ; sequence selKLbraziliensisubseq(2352826,6353).[3001:3351].sp ; gene_orientation .
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	cds	1114	1260	.	-	.	
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	exon	1114	1260	.	-	.	insertions 0 ; deletions 0
gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260)	exonerate:protein2genome:local	similarity	1114	1260	112	-	.	alignment_id 1 ; Query selKLbraziliensisubseq(2352826,6353).[3001:3351].sp ; Align 1261 1 147
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis