Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mex120l07.p1k:subseq(28929,2350) [translate(1)]
         (93 letters)

Database: genome.fa 
           1696 sequences; 31,706,682 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mex120l07.p1k                                                         177   1e-45
mex319f02.q1k                                                          33   0.024


>mex120l07.p1k 
          Length = 38952

 Score =  177 bits (448), Expect = 1e-45
 Identities = 92/119 (77%), Positives = 92/119 (77%), Gaps = 26/119 (21%)
 Frame = -1

Query: 1     MAYIHNGRVVEKKPFTVQGFLLALWTALSLFAQTLFTTQPIGQVVEEHQHPAPRA----- 55
             MAYIHNGRVVEKKPFTVQGFLLALWTALSLFAQTLFTTQPIGQVVEEHQHPAPRA     
Sbjct: 30279 MAYIHNGRVVEKKPFTVQGFLLALWTALSLFAQTLFTTQPIGQVVEEHQHPAPRAANAAA 30100

Query: 56    ---------------------ALGGGRNSGWAAAVNRRGGNVHTLPKAPISGGCASGXG 93
                                  ALGGGRNSGWAAAVNRRGGNVHTLPKAPISGGCASG G
Sbjct: 30099 DGGGILGSLRAMLNRRGGGGQALGGGRNSGWAAAVNRRGGNVHTLPKAPISGGCASG*G 29923


>mex319f02.q1k 
          Length = 122798

 Score = 33.5 bits (75), Expect = 0.024
 Identities = 19/39 (48%), Positives = 21/39 (53%)
 Frame = -2

Query: 52   APRAALGGGRNSGWAAAVNRRGGNVHTLPKAPISGGCAS 90
            AP +A G  R  G AAA   RGG V     AP +GGC S
Sbjct: 7441 APSSAAGNPRTPGGAAAAKPRGGRV----SAPSAGGCHS 7337



 Score = 26.6 bits (57), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 51     PAPRAALGGGRNSGWAAAVNRRGGNVHTLPKAPI 84
              P P AALGG    GW  AV R     H LP+ P+
Sbjct: 113830 PPPAAALGG----GWLLAVVR-----HHLPRRPL 113904