Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= selKLbraziliensisubseq(2352826,6353).[3001:3351].sp
[translate(1)]
         (119 letters)

Database: genome.fa 
           32,746 sequences; 89,612,356 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAHK01001632.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    55   2e-08
gb|AAHK01002512.1| Trypanosoma cruzi strain CL Brener tcruzi_104...    55   2e-08

>gb|AAHK01001632.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome
            shotgun sequence
          Length = 10624

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 53/119 (44%)
 Frame = -1

Query: 1    MAYIHNGRVVEKKPFTVRGFLLAFWGMLSLFARTLFTTQPMTQVVEEYQHXXXXXXXXXX 60
            M Y+ NGRVV+ KPF++  F L+   ++ LF  TL +++P++Q V+EY+           
Sbjct: 2683 MPYVANGRVVDSKPFSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGG 2504

Query: 61   XDGGILGSLRAMLNRRXXXXXXXXXXXXXXXXXXVNRRGGNVHTLPKAPISGGCASGXR 119
               G                                 RG N+H LPK  ++GGCA+G R
Sbjct: 2503 RSVGHA------------------------------PRGPNIHGLPKGSLTGGCATG*R 2417


>gb|AAHK01002512.1| Trypanosoma cruzi strain CL Brener tcruzi_1047053503797, whole genome
            shotgun sequence
          Length = 5550

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 35/119 (29%), Positives = 53/119 (44%)
 Frame = +3

Query: 1    MAYIHNGRVVEKKPFTVRGFLLAFWGMLSLFARTLFTTQPMTQVVEEYQHXXXXXXXXXX 60
            M Y+ NGRVV+ KPF++  F L+   ++ LF  TL +++P++Q V+EY+           
Sbjct: 4098 MPYVANGRVVDSKPFSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGG 4277

Query: 61   XDGGILGSLRAMLNRRXXXXXXXXXXXXXXXXXXVNRRGGNVHTLPKAPISGGCASGXR 119
               G                                 RG N+H LPK  ++GGCA+G R
Sbjct: 4278 RSVGHA------------------------------PRGPNIHGLPKGSLTGGCATG*R 4364


  Database: genome.fa
    Posted date:  Jan 19, 2010  5:13 PM
  Number of letters in database: 89,612,356
  Number of sequences in database:  32,746
  
Lambda     K      H
   0.325    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,518,222
Number of Sequences: 32746
Number of extensions: 106042
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of query: 119
length of database: 29,870,785
effective HSP length: 91
effective length of query: 28
effective length of database: 26,890,899
effective search space: 752945172
effective search space used: 752945172
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)