RESULTS





In this section there are the results obtained in the different steps during the selenoproteins comparison with Human and Horse.


 

 Available file for this field
 

 Not available file for this field


COMPARISON WITH HORSE SELENOPROTEINS

 Protein  Species  Query  Scaffold  Tblastn  Exonerate  T-coffee SECIS Protein Prediction  SECIS
 15 kDa selenoprotein (Sel15) family
 Sel15  Caballus equus    NW_018339842.1            
 Eukaryotic elongation factor (eEFsec) family
 eEFsec  Caballus equus    NW_018329262.1            
 Iodothyronine deiodinase (DIO) family
 DIO1  Caballus equus    NW_018338175.1            
 DIO2  Caballus equus    NW_018337299.1            
 DIOa  Caballus equus    NW_018336842.1            
 Glutathione peroxidase (GPx) family
 GPx2  Caballus equus    NW_018340754.1            
 GPx3  Caballus equus    NW_018343298.1            
 GPx5  Caballus equus    NW_018327251.1            
 GPx6  Caballus equus    NW_018327251.1            
 GPx7  Caballus equus    NW_018338175.1            
 GPx8  Caballus equus    NW_018334927.1            
 GPxa  Caballus equus    NW_018337286.1            
 GPxb  Caballus equus    NW_018337286.1            
 GPxc  Caballus equus    NW_018340754.1            
 Methionine sulfoxide reductase A (MsrA) family
 MsrA  Caballus equus    NW_018334876.1            
 Phosphoseryl-tRNA kinase (PSTK) family
 PSTK  Caballus equus    NW_018335054.1            
 SECIS binding protein 2 (SBP2) family
 SBP2a  Caballus equus    NW_018332373.1            
 SBP2b  Caballus equus    NW_018343786.1            
 Selenocysteine synthase (SecS) family
 SecS  Caballus equus    NW_018334953.1            
 Selenophosphate synthetase (SEPHS) family
 SEPHS1  Caballus equus    NW_018341730.1            
 SEPHS2  Caballus equus    NW_018343187.1            
 Selenoprotein H (SelH) family
 SelH  Caballus equus    NW_018333472.1            
 Selenoprotein I (Sel I) family
 SelI  Caballus equus    NW_018336909.1            
 Selenoprotein K (Sel K) family
 SelK  Caballus equus    NW_018341531.1            
 Selenoprotein M (SelM) family
 SelM  Caballus equus    NW_018338198.1            
 Selenoprotein N (SelN) family
 SelN  Caballus equus    NW_018336176.1            
 Selenoprotein O (Sel O) family
 SelO  Caballus equus    NW_018342064.1            
 SelOa  Caballus equus    NW_018332529.1            
 SelOb  Caballus equus    NW_018337310.1            
 Selenoprotein P (Sel P) family
 SelP  Caballus equus    NW_018330451.1            
 Selenoprotein R (MSRB) family
 MSRB1  Caballus equus    NW_018343886.1            
 MSRB2  Caballus equus    NW_018337576.1            
 MSRB3  Caballus equus    NW_018329462.1            
 Selenoprotein S (SelS) family
 SelS  Caballus equus    NW_018334967.1            
 Selenoprotein T (SelT) family
 SelT  Caballus equus    NW_018336329.1            
 Selenoprotein U (SelU) family
 SelU1  Caballus equus    NW_018335057.1            
 SelU2  Caballus equus    NW_018335050.1            
 Selenoprotein W (SelW) family
 SelWa  Caballus equus    NW_018338398.1            
 SelWb  Caballus equus    NW_018330951.1            
 Thioredoxin reductase (TXNRD) family
 TXNRD2  Caballus equus    NW_018335521.1            
 TXNRD3  Caballus equus    NW_018329262.1            
 TXNRDa  Caballus equus    NW_018335768.1            
 tRNA Sec 1 associated protein 1 (SECp43) family
 SECp43a  Caballus equus    NW_018337598.1            
 SECp43b  Caballus equus    NW_018337598.1            


COMPARISON WITH HUMAN SELENOPROTEINS

 Protein  Species  Query  Scaffold  Tblastn  Exonerate  T-coffee SECIS and Prediction  SECIS
 15 kDa selenoprotein (Sel15) family
 Sel15  Homo sapiens    NW_018339842.1          
 Iodothyronine deiodinase (DI) family
 DI1  Homo sapiens    NW_018338175.1          
 DI2  Homo sapiens    NW_018337299.1          
 DI3  Homo sapiens    NW_018336842.1          
 Glutathione peroxidase (GPx) family
 GPx1  Homo sapiens    NW_018337286.1          
 GPx2  Homo sapiens    NW_018340754.1          
 GPx3  Homo sapiens    NW_018343298.1          
 GPx4  Homo sapiens    NW_018331773.1          
 GPx5  Homo sapiens    NW_018327251.1          
 GPx6  Homo sapiens    NW_018327251.1          
 GPx7  Homo sapiens    NW_018338175.1          
 GPx8  Homo sapiens    NW_018334927.1          
 Methionine sulfoxide reductase A (MsrA) family
 MsrA  Homo sapiens    NW_018334876.1          
 SECIS binding protein 2 (SBP2) family
 SBP2  Homo sapiens    NW_018343786.1          
 Selenophosphate synthetase (SPS) family
 SPS1  Homo sapiens    NW_018341730.1          
 SPS2  Homo sapiens    NW_018334876.1          
 Selenoprotein H (SelH) family
 SelH  Homo sapiens    NW_018330873.1          
 Selenoprotein K (Sel K) family
 SelK  Homo sapiens    NW_018341531.1          
 Selenoprotein M (SelM) family
 SelM  Homo sapiens    NW_018338198.1          
 Selenoprotein N (SelN) family
 SelN  Homo sapiens    NW_018336176.1          
 Selenoprotein O (Sel O) family
 SelO  Homo sapiens    NW_018342064.1          
 Selenoprotein P (Sel P) family
 SelP  Homo sapiens    NW_018330451.1          
 Selenoprotein R (SelR) family
 SelR1  Homo sapiens    NW_018343886.1          
 SelR2  Homo sapiens    NW_018337576.1          
 SelR3  Homo sapiens    NW_018329462.1          
 Selenoprotein S (SelS) family
 SelS  Homo sapiens    NW_018334967.1          
 Selenoprotein T (SelT) family
 SelT  Homo sapiens    NW_018336329.1          
 Selenoprotein U (SelU) family
 SelU1  Homo sapiens    NW_018335057.1          
 SelU2  Homo sapiens    NW_018335050.1          
 SelU3  Homo sapiens    NW_018338731.1          
 Selenoprotein V (SelV) family
 SelV  Homo sapiens    NW_018330951.1          
 Selenoprotein W (SelW) family
 SelW1  Homo sapiens    NW_018338398.1          
 SelW2  Homo sapiens    NW_018334981.1          
 Thioredoxin reductase (TXNRD) family
 TR1  Homo sapiens    NW_018335768.1          
 TR2  Homo sapiens    NW_018335521.1          
 TR3  Homo sapiens    NW_018329262.1