|
|
Results
Results are shown in the following tables, divided by selenoproteins, cystein-containing homologs and machinery.
The genome of reference taken in each case can be found as:
| Species |
Figure |
Mus musculus |
 |
| Homo sapiens |
 |
Rattus norvegicus |
 |
We can also find the files obtained for each protein: its sequence, BLAST, exonerate, genewise, T-coffee, SECIS sequence and SECIS image. Moreover we can find the scaffold from Neotoma lepida genome and the position in which the protein is located.
Selenoprotein Analysis
| Protein ID |
Species |
Seq |
BLAST |
Exonerate |
GeneWise |
Contig |
Gene location |
T-Coffee |
SECIS |
SECIS Image |
| Sel15 |
|
 |
|
|
|
LZPO01055251.1 |
61771-82955(+) |
|
|
|
| GPx1 |
|
|
|
|
|
LZPO01058615.1 |
969259-970069(+) |
|
|
|
| GPx2 |
|
|
|
|
|
LZPO01097134.1 |
309872-313032(-) |
|
|
|
| GPx3 |
|
|
|
|
|
LZPO01027373.1 |
820525-820647(-) |
|
|
|
| DIO1 |
|
|
|
|
|
LZPO01034880.1 |
300281-302279(+) |
|
|
|
| DIO2 |
|
|
|
|
|
LZPO01056726.1 |
3219-3782(+) |
|
|
|
| DIO3 |
|
|
|
|
|
LZPO01089558.1 |
2661737-2662297(-) |
|
|
|
| SELENOH |
|
|
|
|
|
LZPO01027497.1 |
70059-70608(-) |
|
|
|
| SELENOI |
|
|
|
|
|
LZPO01066265.1 |
643146-661778(-) |
|
|
|
| SELENOK |
|
|
|
|
|
LZPO01116999.1 |
10761-10829(-) |
|
|
|
|
|
|
|
|
LZPO01000002.1 |
2076907-2077032(-) |
|
 |
|
| SELENOM |
|
|
|
|
|
LZPO01034772.1 |
184388-184704(-) |
|
|
|
| SELENON |
|
|
|
|
|
LZPO01099511.1 |
2192666-2201214(+) |
|
|
|
| SELENOO |
|
|
|
|
|
LZPO01054713.1 |
723059-734720(+) |
|
|
|
| MSRB1 |
|
|
|
|
|
LZPO01017331.1 |
41557-45551(-) |
|
|
|
| SELENOT |
|
|
|
|
|
LZPO01064442.1 |
3-679(-) |
|
|
|
|
|
|
|
|
LZPO01064442.1 |
3-679(-) |
|
|
|
|
|
|
|
|
LZPO01064442.1 |
3-664(-) |
|
|
|
| SELENOW |
|
|
|
|
|
LZPO01034912.1 |
366904-367131(-) |
|
|
|
| TXNRD1 |
|
|
|
|
|
LZPO01034884.1 |
517901-537436(-) |
|
|
|
| TXNRD2 |
|
|
|
|
|
LZPO01099512.1 |
634082-653596(-) |
|
|
|
| TXNRD3 |
|
|
|
|
|
LZPO01017447.1 |
119853-153041(+) |
|
|
|
Cysteine-containing homologs analysis
| Protein ID |
Species |
Seq |
BLAST |
Exonerate |
GeneWise |
Contig |
Gene location |
T-Coffee |
SECIS |
SECIS Image |
| GPx6 |
|
|
|
|
|
LZPO01108088.1 |
66890-71567(-) |
|
|
|
| GPx7 |
|
|
|
|
|
LZPO01007972.1 |
546082-548263(-) |
|
|
|
| GPx |
|
|
|
|
|
LZPO01008220.1 |
26077-26340(+) |
|
|
|
| MsrA |
|
|
|
|
|
LZPO01087211.1 |
313408-313217(-) |
|
|
|
| MSRB2 |
|
|
|
|
|
LZPO01097099.1 |
77845-95298(-) |
|
|
|
| MSRB3 |
|
|
|
|
|
LZPO01075874.1 |
60417-143594(+) |
|
|
|
| SELENOU1 |
|
|
|
|
|
LZPO01055208.1 |
96128-103405(-) |
|
|
|
| SELENOU2 |
|
|
|
|
|
LZPO01107979.1 |
213304-229685(+) |
|
|
|
| SELENOU3 |
|
|
|
|
|
LZPO01055099.1 |
244602-246266(+) |
|
|
|
Machinery analysis
| Protein ID |
Species |
Seq |
BLAST |
Exonerate |
GeneWise |
Contig |
Gene location |
T-Coffee |
SECIS |
SECIS Image |
| SecS |
|
|
|
|
|
LZPO01055257.1 |
400-23954(-) |
|
|
|
| eEFsec |
|
|
|
|
|
LZPO01055714.1 |
32412-54176(+) |
|
|
|
| PSTK |
|
|
|
|
|
LZPO01108068.1 |
174117-176938(+) |
|
|
|
| SBP2 |
|
|
|
|
|
LZPO01044437.1 |
97563-97817(+) |
|
|
|
| SEPHS2 |
|
|
|
|
|
LZPO01099884.1 |
1827908-1829143(+) |
|
|
|
| Secp43 |
|
|
|
|
|
LZPO01110309.1 |
1810549-1823482(-) |
|
|
|
|
