#!/bin/bash

Crear carpeta t_coffee_e (exonerate)

for file in translations/*.fa ; do {

name=`basename $file`

name=${name%.fa}

protein=${name%_*}

t_coffee /Libreria/$protein.fa $file > t_coffee_e/t_coffee_e_$name.txt 2> error.temp

mv $protein.aln t_coffee_aln/t_coffee_e_$name.aln

mv $protein.html t_coffee_html/t_coffee_e_$name.html

} done

rm *.temp