Predicció de proteïnes a la seqüència
- Servidors:
- ECR Browser
- EMBL Heidelberg, Germany
- EMBL Repeat Masker serverRepeatMasker version '2002/07/13'; RepBase database version 7.4; Chenna Ramu et.al.
- Ensemble Projecte conjunt entre EMBL - EBI i Sanger Institute pel desenvolupament de un sistema de software que produeix i manté l'anotació automàtica en genomes eucariotes. Fundat pel Wellcome Trust.
- FGenesH per SoftBerry
- Geneid
Version 1 de geneid escrit majoritàariament per Enrique Blanco i Roderic Guigó. Profiles i Markov matrices per Genís Parra.
Geneid server escrit per Enrique Blanco amb l'ajuda de Moisés Burset i Josep F. Abril.
- Genscan by Chris Burge. Research group of Samuel Karlin, Department of Mathematics, Stanford University. 1997-2000.
- Gff2ps Josep Francesc Abril Ferrando, Roderic Guigó i Serra
- GrailEXP per Computational Biology at ORNL
- MATCH server
- Ncbi's blast server
Stephen Altschul, Jonathan Epstein, David Lipman, Tom Madden, Scott McGinnis, Jim Ostell, Alex Schaffer, Sergei Shavirin, Heidi Sofia, Jinghui Zhang.
- Protein Families database of alignments and HMMs
- Regulatory Sequence Analysis Tools
- Swiss-Prot (ExPASy Molecular Biology Server The ExPASy (Expert Protein Analysis System) servidor de preotòmica del Swiss Institute of Bioinformatics (SIB)
- Transfac: MatInspector Version 2.2, matrix from TRANSFAC 4.0. MatInspector by AG BIODV, GSF and Research Group Bioinformatics, GBF
- UCSC Genome Bioinformatics Browser
by Jim Kent, Charles Sugnet, Terry Furey, David Haussler, Matt Schwartz, Angie Hinrichs, Donna Karolchik, Heather Trumbower, and the Genome Bioinformatics Group of UC Santa Cruz. Copyright 2001 The Regents of the University of California.
- Pàgines web:
- Articles:
- Piruat JI, Aguilera A. (1998) A novel yeast gene, THO2, is involved in RNA pol II transcription and provides new evidence for transcriptional elongation-associated recombination. EMBO J., 17(16):4859-72.
- Shiozaki EN, Chai J, Rigotti DJ, Riedl SJ, Li P, Srinivasula SM, Alnemri ES, Fairman R, Shi Y. (2003) Mechanism of XIAP-mediated inhibition of caspase-9Mol Cell.;11(2):519-27.
- Losada A, Yokochi T, Kobayashi R, Hirano T.(2000) Identification and characterization of SA/Scc3p subunits in the Xenopus and human cohesin complexes. J Cell Biol. 7;150(3):405-16.
- Shields JM, Yang VW. (1998) Identification of the DNA sequence that interacts with the gut-enriched Kruppel-like factor. Nucleic Acids Res. 26(3):796-802.
- Epstein J, Cai J, Glaser T, Jepeal L, Maas R. (1994) Identification of a Pax paired domain recognition sequence and evidence for DNA-dependent conformational changes. J Biol Chem.;269(11):8355-61.
- Smith SB, Ee HC, Conners JR, German MS. (1999)Paired-homeodomain transcription factor PAX4 acts as a transcriptional repressor in early pancreatic development. Mol Cell Biol. ;19(12):8272-80.
- Bendall AJ, Molloy PL. (1994)Base preferences for DNA binding by the bHLH-Zip protein USF: effects of MgCl2 on specificity and comparison with binding of Myc family members. Nucleic Acids Res.;22(14):2801-10.
- Fernandes M, Xiao H, Lis JT. (1994) Fine structure analyses of the Drosophila and Saccharomyces heat shock factor--heat shock element interactions.Nucleic Acids Res.;22(2):167-73.
- Bucher P. (1990) Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences.J Mol Biol.;212(4):563-78.
- Herr W, Cleary MA. (1995) The POU domain: versatility in transcriptional regulation by a flexible two-in-one DNA-binding domain.
Genes Dev.;9(14):1679-93.
- He X, Gerrero R, Simmons DM, Park RE, Lin CJ, Swanson LW, Rosenfeld MG. (1991) Tst-1, a member of the POU domain gene family, binds the promoter of the gene encoding the cell surface adhesion molecule P0. Mol Cell Biol.;11(3):1739-44.
