OUTFILE SCANNER

SCANNER: TRANSCRIPTIONAL FACTORS MOTIFS MULTIALIGNMENT RESULTS.

RESULTS.

SEQ.: CG6640: 5 exons (Score: 4.778818819) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
72 87 CTTTATGGTCACGGC 1.04184825499837
102 117 GTTTATGGATGTGCG 1.20696191669141
151 166 CCTTATAAATAGAAG 3.33293950698125
153 168 TTATAAATAGAAGTG 7.4289002537503
155 170 ATAAATAGAAGTGGA 0.484925401017293
183 198 GCGTAAATGAATCGG 1.05131143119018
185 200 GTAAATGAATCGGAA 0.296120008163578

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
48 62 ATGGGGTGGTGCTA 7.27577292314123

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
81 93 CACGGCCATAAC 1.35836919113629

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG5150: 1 exons (Score: 4.348616431) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
8 23 CGATTAATTATCTCG 0.19517533946083
128 143 GTATATTAATGGGTC 4.14868389307273
130 145 ATATTAATGGGTCGC 5.83734047220849

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
49 61 TCTGGCTAAGAA 1.46798669784089

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG4653: 2 exons (Score: 4.198430585) arm X

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
62 77 CGATAAGGAGAGCGA 2.60981879914967
80 95 GAATTTATGGGGGTA 3.08822940951955
82 97 ATTTATGGGGGTAAC 0.221056179926662
146 161 CTATAAAGGTCCGCC 7.87131091858197

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
46 60 GATGGGCATTGTAT 3.18925325337695
136 150 ACGGGGTGTTCTAT 1.57449600204106
165 179 GGTAGGCGCACCTT 2.36677178880425

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
35 47 GCGATCTAATCG 0.352815718229027

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG3868: 3 exons (Score: 5.046329676) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
116 131 CCGTAAATAAGGGAG 1.691699577296
118 133 GTAAATAAGGGAGTC 4.12432890151047
120 135 AAATAAGGGAGTCAG 0.068986853899847
138 153 CCAGATAAGGCAGCT 1.90831953855272
151 166 CTATATAACCTCTCT 5.80657740588252
164 179 CTTCAAGTGGCCGCG 1.52854244279153

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
41 53 CAGTACCATTCA 2.92341060335762
133 145 AGTGCCCAGATA 0.0614261457196011

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG7874: 2 exons (Score: 4.735880134) arm X

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
15 30 CCATATACGGAACGT 2.03860543432767
108 123 CGATAAGGCCCGCCA 1.55516968080421
153 168 CTATATAATTGGCCG 7.24948110865605
155 170 ATATAATTGGCCGTA 4.43548585706628

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
83 97 CCGGGGAGATGCGA 0.119243430578794

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG13095: 1 exons (Score: 2.471782298) arm 2L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
30 45 TGATAATATGCCAGA 0.134453073709263
43 58 GATTATAAATATCGA 1.90434167021982
45 60 TTATAAATATCGAAT 6.08411499561588
47 62 ATAAATATCGAATGC 0.775019000856971
69 84 GCATTAAGAACTCAT 1.90693750010874
87 102 GCTTAAGACTGGAGT 0.49486881793353
153 168 CTATAAATTAGACCC 6.82010846469847

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: Cyp6a8: 2 exons (Score: 3.665852756) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
72 87 GCATTAAAGTAAACA 3.43846010326201
156 171 CGTTTAAAAGCAGTT 1.85181089679353
157 172 GTTTAAAAGCAGTTT 6.25004953639059

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
29 41 CTTATCTATTCA 2.30565341353677
184 196 CGGAACCAGTCG 6.09703954816994

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: Cyt-b5: 2 exons (Score: 1.810974347) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
77 92 CTTTTAATAGTAATT 2.08613718057062
87 102 TAATTAATAACAATA 0.543208525830763
97 112 CAATAATTACATCAT 0.497425037082865
151 166 GTACAAAGTTTCAAC 0.281971220470605
167 182 TTATTATAATGGTAC 0.0467506720475811
170 185 TTATAATGGTACAAT 0.411555053701197

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG5839: 9 exons (Score: 2.437645118) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
113 128 CTTTATGGCGATCGA 0.18928674078928
137 152 TTAGATATGGCCAAG 1.88118428357157
153 168 CCATAAAAATGCCGT 7.26173459425405
155 170 ATAAAAATGCCGTGT 3.40137344738087

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
19 31 ACAGCCCAATCA 6.3663274442626
61 73 CTGGGCCAATAA 7.66648916307155
142 154 TATGGCCAAGTC 1.14282153213437
148 160 CAAGTCCATAAA 2.0382472652046
165 177 CGTGTTCAAGCG 0.251084377228848

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG5932: 2 exons (Score: 4.656691178) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
10 25 CTATTAAATCTAAAA 3.33217419629641
24 39 ATTTTTAAACTAAAC 1.18106741946669
25 40 TTTTTAAACTAAACC 0.444242476758371
50 65 GTAAATAAGAGGTAC 2.74521950669821
52 67 AAATAAGAGGTACTA 1.21033408206791
84 99 GTTTTAAAGTGTAGG 3.87207309642657
85 100 TTTTAAAGTGTAGGG 2.1942310887933
105 120 CCATAAATCAGAGGT 5.1936407550644
138 153 GCAGATAAGAACGGG 1.77666621806629
140 155 AGATAAGAACGGGCT 3.42885080529442
153 168 CTATATAAAGAAGGC 9.07380110687349
155 170 ATATAAAGAAGGCCC 6.93487624688086

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: Chit: 3 exons (Score: 4.859898458) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
33 48 GTATTTATTTCTAAT 1.96300824480032
72 87 GTTTATCAGCTCACA 0.406976426750855
109 124 CAACAAAAAAAAAAA 0.86969833975052
118 133 AAAAAAAAAACAAGA 0.0864238641140445
119 134 AAAAAAAAACAAGAA 0.125099761535965

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG6981: 3 exons (Score: 4.882064752) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
48 63 CTACAAATTCTTGGC 2.54783299798671
141 156 ATACGAAAACGAATC 0.387140262635626

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
73 87 ACTGGGCGCGACAG 2.31125950299312

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG7298: 3 exons (Score: 5.346056517) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
2 17 GGTTAAATAACACCC 3.40132248832579
4 19 TTAAATAACACCCCG 1.45348295965133
45 60 GAATAAATAAAAAAT 3.8505034415088
47 62 ATAAATAAAAAATGG 1.98237962254043
49 64 AAATAAAAAATGGAA 3.53127779592302
51 66 ATAAAAAATGGAACA 2.08549504515244
78 93 CTATAATTCCTGAGA 2.54700164633212
152 167 CTATAAAAACCAGGC 10.3352290051119

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
96 110 GCTGGGCTTATCTA 0.643213841945595

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
156 168 AAAAACCAGGCA 4.40796787866628
160 172 ACCAGGCAATGG 3.79952687979864

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG6296: 3 exons (Score: 5.081183415) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
10 25 GCACAAAATAAATTT 0.146989717429663
15 30 AAATAAATTTCCAAG 2.92445091330028
35 50 CGTTAAGTGCTCGCA 0.0476007295033948
155 170 GTATAAATAGCAGTA 8.99254854833795

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
20 32 AATTTCCAAGAA 1.00961322096988
91 103 TTGATCTAATCA 2.54145655187385
175 187 AACAACTAGTAA 0.770663331050187
183 195 GTAAACCATTCT 1.02550661215953

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG18522: 6 exons (Score: 4.871476384) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
2 17 GTATTTGAAACCGGC 3.78625281074677
4 19 ATTTGAAACCGGCAG 1.47911026121106
70 85 GTATATGGAACATGG 3.78376226109178
84 99 GTAGTTAAGAGCGGG 1.64645622312634
86 101 AGTTAAGAGCGGGGA 1.47615902309595
156 171 CTATATATATGGGGC 8.20598066018797
158 173 ATATATATGGGGCTA 7.52272919952222
160 175 ATATATGGGGCTACG 3.44758465194831

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
94 108 GCGGGGAGCAGGTG 2.8805684664532
120 134 GAGAGGCGGGAGTC 5.48590867081879

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG10433: 3 exons (Score: 3.240024098) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
60 75 GTGCAAAAACGCTCG 1.21300700776715
130 145 CGTTGAAAAGCCTCT 0.111703587939104
131 146 GTTGAAAAGCCTCTG 2.02851965904029

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: mfas: 9 exons (Score: 3.061957713) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
1 16 ACATATATAGAGCTA 5.17201897456149
3 18 ATATATAGAGCTATT 5.29083245492183
83 98 GTTGATATCGCGGCA 0.199376637040535
127 142 GCTTATAAATACCAG 3.73620848514734
129 144 TTATAAATACCAGAT 7.11818876314642
166 181 GTTTTAAACTGCGAC 2.89678317580642

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
114 128 CTGCGGCAGAGCAG 1.0885787041194

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: glob1: 4 exons (Score: 4.676355343) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
152 167 CCATAAAAGGCCCCA 8.37187233487417

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
34 46 TCTGTCCAAACT 1.71224953233603

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: Adh: 4 exons (Score: 2.435644741) arm 2L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
75 90 ATTTTTATTGCATTT 0.138763311159123
89 104 TTACATATTACACAT 0.193135341201817
103 118 TTATTTGAACGCCGC 2.85653461977585
167 182 GTATTTAAGGAGCTG 6.73917050563171
169 184 ATTTAAGGAGCTGCG 2.36698830098004

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

VISUAL RESULTS:
CG6640: 5 exons (Score: 4.778818819) arm 3L T T C A C C T C A C T G C G T G G A G A A G C A T A T T G A T T T T T G C T G T T T G G A T T G A T G G G G T G G T G C T A C T G T C G A T G A C T T T A T G G T C A C G G C C A T A A C C A C A G T T A T G T T T A T G G A T G T G C G G T G A G A T A A G C T G A T A A A C G A T C C C A T C T C G A A C C C T T A T A A A T A G A A G T G G A T A G T T T C G A C A C C G C G T A A A T G A A T C G G A A A
TATA
GC
CAAT
octamer
CG5150: 1 exons (Score: 4.348616431) arm 3L G T G G C G A T C G A T T A A T T A T C T C G A G T G C C T A A A A A C G T G A G T A T C A C G G T C T G G C T A A G A A G G T G T C G T A A A T T A C C C G A T C C C C A C C A A A C T G C C C T A T C G A C T C C T C A C A C G A G C T G C A C C T G A T G G T A T A T T A A T G G G T C G C A T G G A A C T A C G G A G T A C A G T A T T C A C T T G G C T G G C A C G G T G A A A G T A T C T C G A A A A
TATA
GC
CAAT
octamer
CG4653: 2 exons (Score: 4.198430585) arm X C C C A T C A G C C A A C G A T C G G T G G T C A C C G C C A C T T A G C G A T C T A A T C G A T G G G C A T T G T A T G G C G A T A A G G A G A G C G A C T T G A A T T T A T G G G G G T A A C A A T C G T G T G G C G A T T A G A T T G C T T A A C C C A T G G T C G T A A A C G G G G T G T T C T A T A A A G G T C C G C C G G C C G G T A G G C G C A C C T T T C A G T T G A G A T C C C A C A A G C C A
TATA
GC
CAAT
octamer
CG3868: 3 exons (Score: 5.046329676) arm 3L T C C C G T T T T G G G T G A A C C A C C G G T A A A G A T T T A C A A G G T A C C A G T A C C A T T C A A T A T G C T G T T C T T T T T G C A C A T T T G G C T G G G A A T C T A A T C T G G A G A G G T C T A C C G C G A A T G G G C C G T A A A T A A G G G A G T C A G T G C C C A G A T A A G G C A G C T A T A T A A C C T C T C T T C A A G T G G C C G C G A G G T T C A G T C G A A T T C G A G A C A
TATA
GC
CAAT
octamer
CG7874: 2 exons (Score: 4.735880134) arm X G A T A T T T T A T T T G C A C C A T A T A C G G A A C G T A T C T G G C T G C C T G T C T A T C T G C C A G A T A C A G A T A C G G A C A T A C G G C A C A G T T A C C G G G G A G A T G C G A G G T G C T A A G C C C G A T A A G G C C C G C C A C C A T C A C A G C A T C C C C G A C G G A T C G G C C A G C T A T A T A A T T G G C C G T A T T C T C G G C T A G C A G C T C A C A C A A C G A T C G A C
TATA
GC
CAAT
octamer
CG13095: 1 exons (Score: 2.471782298) arm 2L A A A G A T C G A A A T A T C A C C T C A C A C C T G A A A T G A T A A T A T G C C A G A T T A T A A A T A T C G A A T G C C G G A C G A G C A T T A A G A A C T C A T A C T G C T T A A G A C T G G A G T G G T C A A C A A A T C T T A T C A C C G G A C A A T T T G G G C T G T G A T T G A T G G C A A G T G C T A T A A A T T A G A C C C G C T A C A C C G A T C G T C A G T T A G T C G A A C T C G A G T
TATA
GC
CAAT
octamer
Cyp6a8: 2 exons (Score: 3.665852756) arm 2R T A A T G A T C A T G T C G A C G T T G G T T T C T G T C C T T A T C T A T T C A G A C T A C A A T T C T T G C C A T C T C A C A G T G C T T G G C A T T A A A G T A A A C A A A A C C T A A G A T T A A C T C T C C C T T T C T A G C G A C T G A G A A T G C A T C G T C A T G C A A A G T A A G T C A A T T T C A G C G T T T A A A A G C A G T T T G C C T A T C G T T T A C G G A A C C A G T C G T A T T C
TATA
GC
CAAT
octamer
Cyt-b5: 2 exons (Score: 1.810974347) arm 2R C T C G G C C A C C T T G A A G A G T T T G G C T A A A A T T A C T T T A G C T T A T C A C T C A G C A C A A T T G A G G C G A A A C A A C T T G T T T G C T T T T A A T A G T A A T T A A T A A C A A T A A T T A C A T C A T A C T T G C T C C G C G G C T T T T T C A G C A T G A C T C T A A G C T A T A G T A C A A A G T T T C A A C A T T A T T A T A A T G G T A C A A T C A A A A C G T A A C T T C G C
TATA
GC
CAAT
octamer
CG5839: 9 exons (Score: 2.437645118) arm 3R C T C G T A G A C T A A T T G T T T T A C A G C C C A A T C A T A C T T C A C A T T T G A C T T G T C C C A G T G C A C T C T G G G C C A A T A A C C G T G G C T T T G C C A C G T T T T A T C G A G A A T T G C G C A A C A A T C T T T A T G G C G A T C G A T G T T G A G G A T T A G A T A T G G C C A A G T C C A T A A A A A T G C C G T G T T C A A G C G G C G G C C G C T C A A T A A C A A A G T G T C
TATA
GC
CAAT
octamer
CG5932: 2 exons (Score: 4.656691178) arm 3L C T T G T T A A A T C T A T T A A A T C T A A A A T T T T T A A A C T A A A C C T C A A T T A G A G G T A A A T A A G A G G T A C T A C T A C C A A T T T T T T A A G T G T T T T A A A G T G T A G G G T A T C C C C A T A A A T C A G A G G T T T A C C A G G G T T T C G A C C A G C A G A T A A G A A C G G G C T A T A T A A A G A A G G C C C C A C G T C T A G T T A G C C A G C A A A C T C T A T T G C C
TATA
GC
CAAT
octamer
Chit: 3 exons (Score: 4.859898458) arm 2R T A T A G G C C T A G T C C A C C T T A T T C A C T C T C C A C T G T A T T T A T T T C T A A T G A T C G C A C G T C C G A G C T T A G C T T T G T T T A T C A G C T C A C A C T T T G C T C T C A A C C C A C A A C A G C A A C A A A A A A A A A A A A A A A C A A G A A C A A C A A T G A C G A C C A C G T C T C A A C C T T C G A C A A G C T G G G A T G C G A A G T A A A G C C C C A G T T T C A G T T C
TATA
GC
CAAT
octamer
CG6981: 3 exons (Score: 4.882064752) arm 3L A G C C C T A T C T T A T C T T A T C G C T G A C C G T G T A T G C T C T G A T T G C A A A A G C T A C A A A T T C T T G G C G A C A C G A C G A A C T G G G C G C G A C A G G T T G G T T G G T T G C C T T T C A G T G A T A T T T T T C A G T T T A G T C G A C G A A C G A C A A C G A T A C G A A A A C G A A T C A T T T C G C T G T A G T T T C C G C G T G A A A A T T A C A G A A A A G A T T G T G A G
TATA
GC
CAAT
octamer
CG7298: 3 exons (Score: 5.346056517) arm 3L T C G G T T A A A T A A C A C C C C G A A A A G A T G T T C A G C G T C T A T C T G G T G G A A T A A A T A A A A A A T G G A A C A A T G T T T C A C T G T C T A T A A T T C C T G A G A A T A G C T G G G C T T A T C T A C A T T C A A T T T A C G A T C T C G A T G G C C A A G T T C G A A T C G T A G A C C T A T A A A A A C C A G G C A A T G G G A A A A C T C C A C C A T C A G T C T T C G A C A A C C
TATA
GC
CAAT
octamer
CG6296: 3 exons (Score: 5.081183415) arm 3R A A A T T G C T G A G C A C A A A A T A A A T T T C C A A G A A T T T C G T T A A G T G C T C G C A A T G T T T T T T T T T T C G T G G T C T T A G A A T C T T A C T G A T T A A A C T T G A T C T A A T C A C T T T A C T G T T G T T G C G C A G A T T T G G T T C T C A T T C A A C A T T T G C A G A C T G A A G G T A T A A A T A G C A G T A C C A C G A A C A A C T A G T A A A C C A T T C T A A A T A T
TATA
GC
CAAT
octamer
CG18522: 6 exons (Score: 4.871476384) arm 3R G A G T A T T T G A A A C C G G C A G A C G A T A A C G T T T C A G A G T G C T A C G A T G A T C T A A T G C T G A A T T G T G A G C G C A G T A T A T G G A A C A T G G T A G T T A A G A G C G G G G A G C A G G T G A A C T T G A A C T T G G A G A G G C G G G A G T C T C T T T C G A G G G C C G G A G A A C C A C T A T A T A T A T G G G G C T A C G G A A G G C C C A T A C C C T C A G T C G C T C G C
TATA
GC
CAAT
octamer
CG10433: 3 exons (Score: 3.240024098) arm 2R C A C A C T C T A C G T C C C A A T C T T C C G C T C G C T C C G T C T C T T T C T C T T T C T C C G C G T C T A G T T G T G C A A A A A C G C T C G C T C T T T C T C C C T C T C G C G C T G T T G C T C T C C C G T C T C C G T C G G C A A A G T A A T T T T T C G T T G A A A A G C C T C T G T G G C G T A A T T A G C T G G G A T C A G T T C A A C G C A A A C C G C G C C A T C G A G A G G A A G T G G
TATA
GC
CAAT
octamer
mfas: 9 exons (Score: 3.061957713) arm 3R T A C A T A T A T A G A G C T A T T A C C G A T T T C A C A G C G T C C C C A A A A G T T C T C T C T G T T C T C C C A A A G C T C C C A T G A T C A C T A C A T G C G T T G A T A T C G C G G C A G A G G A A T C G A C G G C G A C T G C G G C A G A G C A G C T T A T A A A T A C C A G A T G C T C G A C G T T C T T G G G C A G T T A G T T T T A A A C T G C G A C T T G A A G C G G C A A C A T C G T C G
TATA
GC
CAAT
octamer
glob1: 4 exons (Score: 4.676355343) arm 3R A T G A C A C A C C T C A A A G C C C C C G T T G A A C T A C G C C T C T G T C C A A A C T C T C A C T C T C C T G C A T G G G C A G C T T T T G C T C C A C A G C G T T T T G G T T T T G G C G G G C T C T C T C T A G C G A A T C T T T G C C G G C A G A G A G T G C G A A T C T G G T G A G T T C G C T C C C A T A A A A G G C C C C A C A A T T T G C C C G C G C T C A G T T T T C A A C C T G A A C G C
TATA
GC
CAAT
octamer
Adh: 4 exons (Score: 2.435644741) arm 2L T C A G T G C A C T T T C T G G T G T T C C A T T T T C T A T T G G G C A C T T T A C C C C G C A T T T G T T T G C A G A T C A C T T G C T T G C G C A T T T T T A T T G C A T T T T A C A T A T T A C A C A T T A T T T G A A C G C C G C T G C T G C T G C A T C C G T C G A C G T C G A C T G C A C T C G C C C C C A C G A G A G A A C A G T A T T T A A G G A G C T G C G A A G G T C C A A G T C A T G C A
TATA
GC
CAAT
octamer

By: Guiomar Solanas & Alex Vendrell. .
For further information... Visit the SCANNER homepage!

Universitat Pompeu Fabra, March 2002

BEGINNING	ENDING	SEQUENCE	SCORE
72	87	CTTTATGGTCACGGC	1.04184825499837
102	117	GTTTATGGATGTGCG	1.20696191669141
151	166	CCTTATAAATAGAAG	3.33293950698125
153	168	TTATAAATAGAAGTG	7.4289002537503
155	170	ATAAATAGAAGTGGA	0.484925401017293
183	198	GCGTAAATGAATCGG	1.05131143119018
185	200	GTAAATGAATCGGAA	0.296120008163578

BEGINNING	ENDING	SEQUENCE	SCORE
8	23	CGATTAATTATCTCG	0.19517533946083
128	143	GTATATTAATGGGTC	4.14868389307273
130	145	ATATTAATGGGTCGC	5.83734047220849

BEGINNING	ENDING	SEQUENCE	SCORE
62	77	CGATAAGGAGAGCGA	2.60981879914967
80	95	GAATTTATGGGGGTA	3.08822940951955
82	97	ATTTATGGGGGTAAC	0.221056179926662
146	161	CTATAAAGGTCCGCC	7.87131091858197

BEGINNING	ENDING	SEQUENCE	SCORE
46	60	GATGGGCATTGTAT	3.18925325337695
136	150	ACGGGGTGTTCTAT	1.57449600204106
165	179	GGTAGGCGCACCTT	2.36677178880425

BEGINNING	ENDING	SEQUENCE	SCORE
116	131	CCGTAAATAAGGGAG	1.691699577296
118	133	GTAAATAAGGGAGTC	4.12432890151047
120	135	AAATAAGGGAGTCAG	0.068986853899847
138	153	CCAGATAAGGCAGCT	1.90831953855272
151	166	CTATATAACCTCTCT	5.80657740588252
164	179	CTTCAAGTGGCCGCG	1.52854244279153

BEGINNING	ENDING	SEQUENCE	SCORE
41	53	CAGTACCATTCA	2.92341060335762
133	145	AGTGCCCAGATA	0.0614261457196011

BEGINNING	ENDING	SEQUENCE	SCORE
15	30	CCATATACGGAACGT	2.03860543432767
108	123	CGATAAGGCCCGCCA	1.55516968080421
153	168	CTATATAATTGGCCG	7.24948110865605
155	170	ATATAATTGGCCGTA	4.43548585706628

BEGINNING	ENDING	SEQUENCE	SCORE
30	45	TGATAATATGCCAGA	0.134453073709263
43	58	GATTATAAATATCGA	1.90434167021982
45	60	TTATAAATATCGAAT	6.08411499561588
47	62	ATAAATATCGAATGC	0.775019000856971
69	84	GCATTAAGAACTCAT	1.90693750010874
87	102	GCTTAAGACTGGAGT	0.49486881793353
153	168	CTATAAATTAGACCC	6.82010846469847

BEGINNING	ENDING	SEQUENCE	SCORE
72	87	GCATTAAAGTAAACA	3.43846010326201
156	171	CGTTTAAAAGCAGTT	1.85181089679353
157	172	GTTTAAAAGCAGTTT	6.25004953639059

BEGINNING	ENDING	SEQUENCE	SCORE
29	41	CTTATCTATTCA	2.30565341353677
184	196	CGGAACCAGTCG	6.09703954816994

BEGINNING	ENDING	SEQUENCE	SCORE
77	92	CTTTTAATAGTAATT	2.08613718057062
87	102	TAATTAATAACAATA	0.543208525830763
97	112	CAATAATTACATCAT	0.497425037082865
151	166	GTACAAAGTTTCAAC	0.281971220470605
167	182	TTATTATAATGGTAC	0.0467506720475811
170	185	TTATAATGGTACAAT	0.411555053701197

BEGINNING	ENDING	SEQUENCE	SCORE
113	128	CTTTATGGCGATCGA	0.18928674078928
137	152	TTAGATATGGCCAAG	1.88118428357157
153	168	CCATAAAAATGCCGT	7.26173459425405
155	170	ATAAAAATGCCGTGT	3.40137344738087

BEGINNING	ENDING	SEQUENCE	SCORE
19	31	ACAGCCCAATCA	6.3663274442626
61	73	CTGGGCCAATAA	7.66648916307155
142	154	TATGGCCAAGTC	1.14282153213437
148	160	CAAGTCCATAAA	2.0382472652046
165	177	CGTGTTCAAGCG	0.251084377228848

BEGINNING	ENDING	SEQUENCE	SCORE
10	25	CTATTAAATCTAAAA	3.33217419629641
24	39	ATTTTTAAACTAAAC	1.18106741946669
25	40	TTTTTAAACTAAACC	0.444242476758371
50	65	GTAAATAAGAGGTAC	2.74521950669821
52	67	AAATAAGAGGTACTA	1.21033408206791
84	99	GTTTTAAAGTGTAGG	3.87207309642657
85	100	TTTTAAAGTGTAGGG	2.1942310887933
105	120	CCATAAATCAGAGGT	5.1936407550644
138	153	GCAGATAAGAACGGG	1.77666621806629
140	155	AGATAAGAACGGGCT	3.42885080529442
153	168	CTATATAAAGAAGGC	9.07380110687349
155	170	ATATAAAGAAGGCCC	6.93487624688086

BEGINNING	ENDING	SEQUENCE	SCORE
33	48	GTATTTATTTCTAAT	1.96300824480032
72	87	GTTTATCAGCTCACA	0.406976426750855
109	124	CAACAAAAAAAAAAA	0.86969833975052
118	133	AAAAAAAAAACAAGA	0.0864238641140445
119	134	AAAAAAAAACAAGAA	0.125099761535965

BEGINNING	ENDING	SEQUENCE	SCORE
48	63	CTACAAATTCTTGGC	2.54783299798671
141	156	ATACGAAAACGAATC	0.387140262635626

BEGINNING	ENDING	SEQUENCE	SCORE
2	17	GGTTAAATAACACCC	3.40132248832579
4	19	TTAAATAACACCCCG	1.45348295965133
45	60	GAATAAATAAAAAAT	3.8505034415088
47	62	ATAAATAAAAAATGG	1.98237962254043
49	64	AAATAAAAAATGGAA	3.53127779592302
51	66	ATAAAAAATGGAACA	2.08549504515244
78	93	CTATAATTCCTGAGA	2.54700164633212
152	167	CTATAAAAACCAGGC	10.3352290051119

BEGINNING	ENDING	SEQUENCE	SCORE
156	168	AAAAACCAGGCA	4.40796787866628
160	172	ACCAGGCAATGG	3.79952687979864

BEGINNING	ENDING	SEQUENCE	SCORE
10	25	GCACAAAATAAATTT	0.146989717429663
15	30	AAATAAATTTCCAAG	2.92445091330028
35	50	CGTTAAGTGCTCGCA	0.0476007295033948
155	170	GTATAAATAGCAGTA	8.99254854833795

BEGINNING	ENDING	SEQUENCE	SCORE
20	32	AATTTCCAAGAA	1.00961322096988
91	103	TTGATCTAATCA	2.54145655187385
175	187	AACAACTAGTAA	0.770663331050187
183	195	GTAAACCATTCT	1.02550661215953

BEGINNING	ENDING	SEQUENCE	SCORE
2	17	GTATTTGAAACCGGC	3.78625281074677
4	19	ATTTGAAACCGGCAG	1.47911026121106
70	85	GTATATGGAACATGG	3.78376226109178
84	99	GTAGTTAAGAGCGGG	1.64645622312634
86	101	AGTTAAGAGCGGGGA	1.47615902309595
156	171	CTATATATATGGGGC	8.20598066018797
158	173	ATATATATGGGGCTA	7.52272919952222
160	175	ATATATGGGGCTACG	3.44758465194831

BEGINNING	ENDING	SEQUENCE	SCORE
94	108	GCGGGGAGCAGGTG	2.8805684664532
120	134	GAGAGGCGGGAGTC	5.48590867081879

BEGINNING	ENDING	SEQUENCE	SCORE
60	75	GTGCAAAAACGCTCG	1.21300700776715
130	145	CGTTGAAAAGCCTCT	0.111703587939104
131	146	GTTGAAAAGCCTCTG	2.02851965904029

BEGINNING	ENDING	SEQUENCE	SCORE
1	16	ACATATATAGAGCTA	5.17201897456149
3	18	ATATATAGAGCTATT	5.29083245492183
83	98	GTTGATATCGCGGCA	0.199376637040535
127	142	GCTTATAAATACCAG	3.73620848514734
129	144	TTATAAATACCAGAT	7.11818876314642
166	181	GTTTTAAACTGCGAC	2.89678317580642

BEGINNING	ENDING	SEQUENCE	SCORE
75	90	ATTTTTATTGCATTT	0.138763311159123
89	104	TTACATATTACACAT	0.193135341201817
103	118	TTATTTGAACGCCGC	2.85653461977585
167	182	GTATTTAAGGAGCTG	6.73917050563171
169	184	ATTTAAGGAGCTGCG	2.36698830098004