OUTFILE SCANNER

SCANNER: TRANSCRIPTIONAL FACTORS MOTIFS MULTIALIGNMENT RESULTS.

RESULTS.

SEQ.: Pu: 5 exons (Score: -5.166045437) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
2 17 GTTTTACAGCCACTG 0.45951253032404

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
6 18 TACAGCCACTGG 5.69352073492931
115 127 GTTGGCTATTGA 1.63515795140099
178 190 GCTGGCCACAGC 0.566398625882566

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: Hsp27: 1 exons (Score: -5.68237202) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
8 23 CTATATCTAAATATT 0.82392591972228
24 39 TTATATTTGCATTAG 1.15220709259598
102 117 TTATTAAAGTTCCGT 3.75036603425024
155 170 CAGTATAAAAGCCGG 1.07311471544771
157 172 GTATAAAAGCCGGCG 10.9053842957213

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
121 133 GGTTGCCATGCA 1.29634209117863

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE
25 38 TATATTTGCATTA 7.03764703039914

SEQ.: CG4471: 4 exons (Score: -2.37187441) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
44 59 ATTTTTATATCACTT 1.20605734371588
46 61 TTTTATATCACTTGA 1.47501048775718
59 74 GAATAAAGCAATCGA 2.28424866811488
156 171 GCTTTAAATTTGGCG 0.0740443760263913
157 172 CTTTAAATTTGGCGC 5.06463078608668

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
132 146 CCTGGGAAAGGTCG 0.305822640892742

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
61 73 ATAAAGCAATCG 2.84719040429753

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG5171: 4 exons (Score: -5.177910356) arm 2L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
96 111 GTTCAAAAGCACAAA 2.89952617405218
104 119 GCACAAAAACCCGGC 5.29347303790282
153 168 CATTATAAAACTGCA 2.40263809138868
155 170 TTATAAAACTGCAGC 6.35292771632482

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
64 78 AATCGGCGGGCGGT 1.44853568232544
68 82 GGCGGGCGGTGGGT 4.30079862373584
71 85 GGGCGGTGGGTGGC 0.00105744242670291

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
1 13 AGGAGGCAATGC 0.777905256195292

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG2471: 4 exons (Score: -3.689835188) arm X

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
58 73 GCTTGAAAATGCCAA 0.106898574729175
59 74 CTTGAAAATGCCAAA 0.360155733950517
154 169 CTATAAAAACCGAAA 9.34894768216976
185 200 ATATTTCAATGCGGA 0.412258071513975

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
4 16 CAAGGCTAATGA 3.08483397824568
11 23 AATGACCATTTC 1.32514308892832
22 34 CGGAGCCAAGGA 6.620214637911

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG8502: 7 exons (Score: -3.113370443) arm 2R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
1 16 CTAAAAATCCAAAGG 2.95308208721951
89 104 GAATTTTAGGCGCGA 0.27481418657254
148 163 CTATATAAATCCGGT 8.59098600206165
150 165 ATATAAATCCGGTGT 6.81655846183812

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
11 25 AAAGGGAGCAGCTC 3.65265812632801
93 107 TTTAGGCGCGACGA 1.01523872461773

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
4 16 AAAATCCAAAGG 4.05572672450102
173 185 GGAAACCAAACA 5.02275124895508

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG11892: 2 exons (Score: -8.564339995) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
31 46 CTACAAAATCTGAGA 3.33888026795749
54 69 TTATATTAATCACAG 2.39907774086924
56 71 ATATTAATCACAGTT 3.2857977290189
87 102 GGATATATACGGTTT 4.73364882800199
89 104 ATATATACGGTTTCA 0.796786190346005
101 116 TCATATCTAGGAGCT 0.0510800271261126
147 162 CCATAAAAGCGCAGG 8.62362621858022

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
72 86 TGACGGAGGGCCCT 2.04013884521883
106 120 TCTAGGAGCTGTGG 0.115382524851704
115 129 TGTGGGAACAGTTT 2.85758621495045

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
142 154 TTTTGCCATAAA 1.63352774373928

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: ImpE2: 1 exons (Score: -3.003703695) arm 3L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
135 150 CAACAAAGTCGACGG 0.694174386081652
167 182 GTTTGTATAAAATGC 0.21947893110788
169 184 TTGTATAAAATGCGA 0.483083849441184
171 186 GTATAAAATGCGATG 8.65035482991634

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
23 35 CCAGTTCAATGA 1.92542462777598
51 63 ATTGGCCAAAGA 7.68831363246618

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG9021: 2 exons (Score: -3.454327363) arm 2L

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
39 54 CTTTTTATTTTGGGT 0.112196759920482
115 130 GTAAATATGAATTGG 1.8458446026841
117 132 AAATATGAATTGGGT 0.325399606427697
119 134 ATATGAATTGGGTAA 1.74053722120228
128 143 GGGTAAATAGCAGAT 0.799989081125642
137 152 GCAGATAAAGTGCTT 0.394824902531585
139 154 AGATAAAGTGCTTCT 1.75563715321625
158 173 CTATAAAAGGAGAAA 8.8955369072745

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE
47 61 TTTGGGTACGGTGT 1.55835605864609
184 198 AGGAGGCACAGTTT 3.9775401411118

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: CG11459: 1 exons (Score: -4.04525441) arm 3R

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
6 21 ATATAATTTTATACA 0.181807687407018
16 31 ATACATAAGCAAAAT 2.98101281256708
36 51 ATTTTAATCGTAATC 0.313482459122315
81 96 TCACATAAATAACCC 0.522258962797818
83 98 ACATAAATAACCCCA 5.90102132856121
85 100 ATAAATAACCCCAGA 2.31013542775453
123 138 AAACATAAAGCTCTT 0.690862320998807
125 140 ACATAAAGCTCTTGA 2.18492522455375
167 182 TTACAAATCTACTTT 0.425908677020505
177 192 ACTTTAAACGCGATC 1.01742581393816
178 193 CTTTAAACGCGATCA 1.91771746185817

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE
64 76 CAAAACCAATAA 7.01502940330829
99 111 ATAATGCATTCG 0.376517123632443
112 124 AGCCGCCAGGCA 1.37302527252796
116 128 GCCAGGCAAACA 1.35406925159728

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

VISUAL RESULTS:
Pu: 5 exons (Score: -5.166045437) arm 2R C G G T T T T A C A G C C A C T G G A T G C C A A A C C G T G G G C C T G C G C T C A G C T C G G T T T A G T T C C G C T C A C T T A A T C T C C G G C A A G C G A A A C T C G G A G C A G A G C T T G C C C G T T G G A T G G T C T G T T G G C T A T T G A T T G G A G C T T T C C G C C G C T C A A A G C T C C G C T C G A G A G G T T C T T A T T G C C A C C G C T G G C C A C A G C A G C C A C C A G A A
TATA
GC
CAAT
octamer
Hsp27: 1 exons (Score: -5.68237202) arm 3L T T G C T T G C C T A T A T C T A A A T A T T A T T A T A T T T G C A T T A G G G G A T C A T A G G G A A A A C C T T C T C T G C A G G C A A A A T C T A A C G A A G A T G G C A A C C C C C C A T C A T T T T A T T A A A G T T C C G T C C C T G G T T G C C A T G C A C T A G T G T G T G T G A G C C C A G C G T C A G T A T A A A A G C C G G C G T C A A C G T C G C C C G A G C A C A G T C T A A A C T G
TATA
GC
CAAT
octamer
CG4471: 4 exons (Score: -2.37187441) arm 2R A A G A G T T A G A A A A T T T T T A G C T G T A C T T A C T A A C C T C G A C C T T A A T T T T T A T A T C A C T T G A A T A A A G C A A T C G A A T G T A G A G A A A G C T T C G T T G C A A T C T G T T T C T C T T T C C C T G A C T T C T T A T C G C T G G C C C C T G G G A A A G G T C G C A A T G C A C T C G C T T T A A A T T T G G C G C A T C T G C C G C A G A T T A C A C C A C T C T C G C G A
TATA
GC
CAAT
octamer
CG5171: 4 exons (Score: -5.177910356) arm 2L A A G G A G G C A A T G C A C G C A C C G T A C A C G A A G G C A A C G C A T G A T G C A C T G A A T C G G C G A G T C G T T G A A T C G G C G G G C G G T G G G T G G C G T A C T G C C T T T G T T C A A A A G C A C A A A A A C C C G G C G A C A A T T T G T T T G A G G A A A T C A C C G C C G A C G G A T C A T T A T A A A A C T G C A G C T G C C G G A G A A G T A G C A A G T C A A A C C G C C T T G
TATA
GC
CAAT
octamer
CG2471: 4 exons (Score: -3.689835188) arm X A T C G C A A G G C T A A T G A C C A T T T C G G A G C C A A G G A A A G A G T A T C T G C G A A T C G G T G T G C G C T T G A A A A T G C C A A A T T G T G C T A T T A T T T T T T G T T T T T C T T C C C A T T T T A T T T T T C A T T T G T T T T G T T A T G C G C A G C T T T T C T T T C T T C T T C G T G C T A T A A A A A C C G A A A G T A A A A A G C A T T T T C A A T A T T T C A A T G C G G A A
TATA
GC
CAAT
octamer
CG8502: 7 exons (Score: -3.113370443) arm 2R T C T A A A A A T C C A A A G G G A G C A G C T C G G G G T A C A A G T C T T C A T G A A A T G T A G C T G A T G A A C C G A A G T G A A C C G A C G A A T C T C C G C T C A G A G A A T T T T A G G C G C G A C G A T G C G T T G A G A G C A G C G C T G C G A C T G C G A A C C T G G C A C A T T T C T A T A T A A A T C C G G T G T A C T G G A A G G G A A A C C A A A C A T T C C T G T T G C A A T C G C
TATA
GC
CAAT
octamer
CG11892: 2 exons (Score: -8.564339995) arm 3R C T G T A C G C C C G T T G T G T G C A T A C G T T C A C A G C T A C A A A A T C T G A G A T T T T A T G G T T A T A T T A A T C A C A G T T G T G A C G G A G G G C C C T C G G A T A T A T A C G G T T T C A T A T C T A G G A G C T G T G G G A A C A G T T T A C A G C G T C T G A A A T T T T G C C A T A A A A G C G C A G G T A C T C T G A G T T T T A G G C A C A A T C T C A T T C A C A A G T C T T A
TATA
GC
CAAT
octamer
ImpE2: 1 exons (Score: -3.003703695) arm 3L G T G C A A T G C A A G A C C A A C T T G G T C C A G T T C A A T G A C A C T C A G T G T G C A A G A A T T G G C C A A A G A C G A T G G C A C T G A T A C T A C C A C T T T T C C C C A A C C T C T T G C T C A T A C C T T A G C C C T G T G T G C T T G T T T G T C T G C C A A C A A A G T C G A C G G C G G C T G C G C A G C C G G T G G T T T G T A T A A A A T G C G A T G G G C C T A A A G A A A T T T
TATA
GC
CAAT
octamer
CG9021: 2 exons (Score: -3.454327363) arm 2L A T G A G C T T T C T T T G A T G A G C T C C C G A C A A G G T C G T T C C A C T T T T T A T T T T G G G T A C G G T G T G T T C T T G T T G A T T C T T T G C T C T G A A T G C G A G T A T T T G C C T G T G A A A T T T T T C A A G T A A A T A T G A A T T G G G T A A A T A G C A G A T A A A G T G C T T C T C G T G C T A T A A A A G G A G A A A A C A A C G A C G A A A G G A G G C A C A G T T T C G C
TATA
GC
CAAT
octamer
CG11459: 1 exons (Score: -4.04525441) arm 3R T A A A T A A T A T A A T T T T A T A C A T A A G C A A A A T A T T G C A T T T T A A T C G T A A T C T T T T C C A A T T T C C C A A A A C C A A T A A G C A G T T C A C A T A A A T A A C C C C A G A T A A T G C A T T C G C A G C C G C C A G G C A A A C A T A A A G C T C T T G A T T T C T A G T T T T T C C A G C T C A A A A T C A T T T A C A A A T C T A C T T T A A A C G C G A T C A G T T C G C A A
TATA
GC
CAAT
octamer

By: Guiomar Solanas & Alex Vendrell. .
For further information... Visit the SCANNER homepage!

Universitat Pompeu Fabra, March 2002

BEGINNING	ENDING	SEQUENCE	SCORE
6	18	TACAGCCACTGG	5.69352073492931
115	127	GTTGGCTATTGA	1.63515795140099
178	190	GCTGGCCACAGC	0.566398625882566

BEGINNING	ENDING	SEQUENCE	SCORE
8	23	CTATATCTAAATATT	0.82392591972228
24	39	TTATATTTGCATTAG	1.15220709259598
102	117	TTATTAAAGTTCCGT	3.75036603425024
155	170	CAGTATAAAAGCCGG	1.07311471544771
157	172	GTATAAAAGCCGGCG	10.9053842957213

BEGINNING	ENDING	SEQUENCE	SCORE
44	59	ATTTTTATATCACTT	1.20605734371588
46	61	TTTTATATCACTTGA	1.47501048775718
59	74	GAATAAAGCAATCGA	2.28424866811488
156	171	GCTTTAAATTTGGCG	0.0740443760263913
157	172	CTTTAAATTTGGCGC	5.06463078608668

BEGINNING	ENDING	SEQUENCE	SCORE
96	111	GTTCAAAAGCACAAA	2.89952617405218
104	119	GCACAAAAACCCGGC	5.29347303790282
153	168	CATTATAAAACTGCA	2.40263809138868
155	170	TTATAAAACTGCAGC	6.35292771632482

BEGINNING	ENDING	SEQUENCE	SCORE
64	78	AATCGGCGGGCGGT	1.44853568232544
68	82	GGCGGGCGGTGGGT	4.30079862373584
71	85	GGGCGGTGGGTGGC	0.00105744242670291

BEGINNING	ENDING	SEQUENCE	SCORE
58	73	GCTTGAAAATGCCAA	0.106898574729175
59	74	CTTGAAAATGCCAAA	0.360155733950517
154	169	CTATAAAAACCGAAA	9.34894768216976
185	200	ATATTTCAATGCGGA	0.412258071513975

BEGINNING	ENDING	SEQUENCE	SCORE
4	16	CAAGGCTAATGA	3.08483397824568
11	23	AATGACCATTTC	1.32514308892832
22	34	CGGAGCCAAGGA	6.620214637911

BEGINNING	ENDING	SEQUENCE	SCORE
1	16	CTAAAAATCCAAAGG	2.95308208721951
89	104	GAATTTTAGGCGCGA	0.27481418657254
148	163	CTATATAAATCCGGT	8.59098600206165
150	165	ATATAAATCCGGTGT	6.81655846183812

BEGINNING	ENDING	SEQUENCE	SCORE
11	25	AAAGGGAGCAGCTC	3.65265812632801
93	107	TTTAGGCGCGACGA	1.01523872461773

BEGINNING	ENDING	SEQUENCE	SCORE
4	16	AAAATCCAAAGG	4.05572672450102
173	185	GGAAACCAAACA	5.02275124895508

BEGINNING	ENDING	SEQUENCE	SCORE
31	46	CTACAAAATCTGAGA	3.33888026795749
54	69	TTATATTAATCACAG	2.39907774086924
56	71	ATATTAATCACAGTT	3.2857977290189
87	102	GGATATATACGGTTT	4.73364882800199
89	104	ATATATACGGTTTCA	0.796786190346005
101	116	TCATATCTAGGAGCT	0.0510800271261126
147	162	CCATAAAAGCGCAGG	8.62362621858022

BEGINNING	ENDING	SEQUENCE	SCORE
72	86	TGACGGAGGGCCCT	2.04013884521883
106	120	TCTAGGAGCTGTGG	0.115382524851704
115	129	TGTGGGAACAGTTT	2.85758621495045

BEGINNING	ENDING	SEQUENCE	SCORE
135	150	CAACAAAGTCGACGG	0.694174386081652
167	182	GTTTGTATAAAATGC	0.21947893110788
169	184	TTGTATAAAATGCGA	0.483083849441184
171	186	GTATAAAATGCGATG	8.65035482991634

BEGINNING	ENDING	SEQUENCE	SCORE
23	35	CCAGTTCAATGA	1.92542462777598
51	63	ATTGGCCAAAGA	7.68831363246618

BEGINNING	ENDING	SEQUENCE	SCORE
39	54	CTTTTTATTTTGGGT	0.112196759920482
115	130	GTAAATATGAATTGG	1.8458446026841
117	132	AAATATGAATTGGGT	0.325399606427697
119	134	ATATGAATTGGGTAA	1.74053722120228
128	143	GGGTAAATAGCAGAT	0.799989081125642
137	152	GCAGATAAAGTGCTT	0.394824902531585
139	154	AGATAAAGTGCTTCT	1.75563715321625
158	173	CTATAAAAGGAGAAA	8.8955369072745

BEGINNING	ENDING	SEQUENCE	SCORE
47	61	TTTGGGTACGGTGT	1.55835605864609
184	198	AGGAGGCACAGTTT	3.9775401411118

BEGINNING	ENDING	SEQUENCE	SCORE
6	21	ATATAATTTTATACA	0.181807687407018
16	31	ATACATAAGCAAAAT	2.98101281256708
36	51	ATTTTAATCGTAATC	0.313482459122315
81	96	TCACATAAATAACCC	0.522258962797818
83	98	ACATAAATAACCCCA	5.90102132856121
85	100	ATAAATAACCCCAGA	2.31013542775453
123	138	AAACATAAAGCTCTT	0.690862320998807
125	140	ACATAAAGCTCTTGA	2.18492522455375
167	182	TTACAAATCTACTTT	0.425908677020505
177	192	ACTTTAAACGCGATC	1.01742581393816
178	193	CTTTAAACGCGATCA	1.91771746185817

BEGINNING	ENDING	SEQUENCE	SCORE
64	76	CAAAACCAATAA	7.01502940330829
99	111	ATAATGCATTCG	0.376517123632443
112	124	AGCCGCCAGGCA	1.37302527252796
116	128	GCCAGGCAAACA	1.35406925159728