OUTFILE SCANNER

SCANNER: TRANSCRIPTIONAL FACTORS MOTIFS MULTIALIGNMENT RESULTS.

RESULTS.

SEQ.: test1

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
25 40 CTATAAGCATGCTAG 0.87071807277525

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: test2

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
37 52 AAATATATATATATA 1.71178009458421

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

SEQ.: test3

MATRIX: TATA

BEGINNING ENDING SEQUENCE SCORE
1 16 ATAAAAAAAAAAAAA 1.76061821183528

MATRIX: GC

BEGINNING ENDING SEQUENCE SCORE

MATRIX: CAAT

BEGINNING ENDING SEQUENCE SCORE

MATRIX: octamer

BEGINNING ENDING SEQUENCE SCORE

VISUAL RESULTS:
test1 G T A C G T A C G T A T C G T A C G A T C G A T G C T A T A A G C A T G C T A G C T G C A G C A G C A C C T A C G A T
TATA
GC
CAAT
octamer
test2 G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C C C A A A A T A T A T A T A T A T A T
TATA
GC
CAAT
octamer
test3 T A T A A A A A A A A A A A A A A A A A A A A A A A
TATA
GC
CAAT
octamer

By: Guiomar Solanas & Alex Vendrell. .
For further information... Visit the SCANNER homepage!

Universitat Pompeu Fabra, March 2002