ommand line: [exonerate -m p2g --showtargetgff -q ./queriescanviades_vampir/DI2v.fa -t ./fastasubseq_vampir/DI2v.1.genome.fa -E]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00002284_2.0 # Protein # Iodothyronine deiodinase 2 (DI2) # Megabat (Pteropus vampyrus)
        Target: gi|431839086|gb|KB031153.1|:subseq(7162969,200000) Pteropus alecto unplaced genomic scaffold scaffold8, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 380
   Query range: 0 -> 88
  Target range: 8177 -> 952

    1 : MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSerAs :   21
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        MetGlyIleLeuSerValAspLeuLeuIleThrLeuGlnIleLeuProValPhePheSerAs
 8177 : ATGGGCATCCTCAGCGTAGACTTGCTGATCACACTGCAGATTCTGCCAGTTTTTTTCTCCAA : 8117

   22 : nCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeuLeuS :   42
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        nCysLeuPheLeuAlaLeuTyrAspSerValIleLeuLeuLysHisValValLeuLeuLeuS
 8116 : CTGCCTCTTCCTGGCGCTCTATGACTCGGTCATTCTCCTCAAGCACGTGGTGCTGCTCTTGA : 8054

   43 : erArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyMetArgCys :   62
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
        erArgSerLysSerThrArgGlyGluTrpArgArgMetLeuThrSerGluGlyMetArgCys
 8053 : GCCGCTCCAAGTCCACTCGCGGGGAGTGGAGGCGCATGCTGACCTCAGAGGGAATGCGCTGC : 7994

   63 : IleTrpLysSerPheLeuLeuAspAlaTyrLysGln  >>>> Target Intron 1 >>> :   75
        ||||||||||||||||||||||||||||||||||||           6961 bp
        IleTrpLysSerPheLeuLeuAspAlaTyrLysGln++
 7993 : ATCTGGAAGAGCTTCCTCCTGGATGCCTACAAACAGgt........................ : 7953

   76 : >  ValLysLeuGlyGluAspAlaProAsnSerSerValValArg :   88
           :!!:!!  !|||:!!.!..!!  !  !!!! !!  !||||||
         ++IleGluSerGlyLysGlnThrLysProThrArgLysValArg
 7952 : .agATAGAAAGTGGGAAACAAACAAAACCCACACGAAAAGTGAGA :  953

vulgar: SPP00002284_2.0 0 88 . gi|431839086|gb|KB031153.1|:subseq(7162969,200000) 8177 952 - 380 M 74 222 5 0 2 I 0 6957 3 0 2 M 14 42
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-12-01
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  gene    953     8177    380     -       .       gene_id 1 ; sequence SPP00002284_2.0 ; gene_orientation +
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  cds     7956    8177    .       -       .
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  exon    7956    8177    .       -       .       insertions 0 ; deletions 0
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  splice5 7954    7955    .       -       .       intron_id 1 ; splice_site "GT"
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  intron  995     7955    .       -       .       intron_id 1
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  splice3 995     996     .       -       .       intron_id 0 ; splice_site "AG"
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  cds     953     994     .       -       .
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  exon    953     994     .       -       .       insertions 0 ; deletions 0
gi|431839086|gb|KB031153.1|:subseq(7162969,200000)      exonerate:protein2genome:local  similarity      953     8177    380     -       .       alignment_id 1 ; Query SPP00002284_2.0 ; Align 8178 1 222 ; Align 995 75 42
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis