Command line: [exonerate -m p2g --showtargetgff -q ./query/SPP00000067_2.0.fa -t ./SPP00000067_2.0.fa/gi|444512966|gb|KB368215.1|/SPP00000067_2.0.fa_gi|444512966|gb|KB368215.1|_genomic.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000067_2.0 # Protein # 15 kDa selenoprotein (Sel15) # Human (Homo sapiens)
        Target: gi|444512966|gb|KB368215.1|:subseq(2183348,100000) Tupaia chinensis unplaced genomic scaffold Scaffold147417_1, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 757
   Query range: 0 -> 162
  Target range: 9999 -> 47700

     1 : MetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeuLeuLeuAla :    20
         |||||||||||||||  !|||!  |||! !|||||||||||||||!.!|||||||||.!!
         MetAlaAlaGlyProValGlyLeuLeuGlyProAlaPheGlyLeuHisLeuLeuLeuThr
 10000 : ATGGCGGCTGGGCCCGTTGGATTGCTTGGGCCGGCCTTCGGGCTGCACTTGCTGTTGACT : 10057

    21 : ThrValLeuGlnAla  >>>> Target Intron 1 >>>>  ValSerAlaPheGlyA :    31
         |||||||||||||||           7304 bp           |||||||||!!.||||
         ThrValLeuGlnAla++                         ++ValSerAlaLeuGlyA
 10058 : ACTGTGCTTCAGGCGgt.........................agGTGTCTGCTTTGGGGG : 17394

    32 : laGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuCysSerS :    51
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuLeuCysSerS
 17395 : CAGAGTTTTCATCAGAGGCATGCAGAGAATTAGGCTTCTCTAGCAACTTGCTCTGCAGCT : 17454

    52 : erCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysArgGlyCysC :    71
         |||||||||||||||||||||||!:!||||||||||||||||||||||||||||||||||
         erCysAspLeuLeuGlyGlnPheSerLeuLeuGlnLeuAspProAspCysArgGlyCysC
 17455 : CTTGCGATCTTCTTGGACAATTCAGCCTGCTTCAGCTGGATCCTGATTGCAGGGGATGCT : 17514

    72 : ysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intron 2 >>>>  :    82
         ||||||||||||||||||||||||||||||||           11040 bp         
         ysGlnGluGluAlaGlnPheGluThrLysLys++                         +
 17515 : GTCAGGAAGAAGCGCAATTTGAAACCAAAAAGgt.........................a : 28585

    83 :  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyArgPheProGlnVa :   101
          |||||||||||||||||||||||||||||||||   |||||||||||||||||||||||
         +LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyArgPheProGlnVa
 28586 : gTTATATGCAGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAAGT : 28644

   102 : lGln{A}  >>>> Target Intron 3 >>>>  {la}PheValArgSerAspLysPr :   110
         ||||{|}           15586 bp          {||}||||||||||||||||||||
         lGln{A}++                         ++{la}PheValArgSerAspLysPr
 28645 : TCAA{G}gt.........................ag{CT}TTTGTCAGGAGTGATAAACC : 44257

   111 : oLysLeuPheArgGlyLeuGlnIleLys  >>>> Target Intron 4 >>>>  Tyr :   120
         ||||||||||||||||||||||||||||           3285 bp           |||
         oLysLeuPheArgGlyLeuGlnIleLys++                         ++Tyr
 44258 : CAAACTATTCAGAGGACTGCAAATCAAGgt.........................agTAT : 47572

   121 : ValArgGlySerAspProValLeuLysLeuLeuAspAspAsnGlyAsnIleAlaGluGlu :   140
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValArgGlySerAspProValLeuLysLeuLeuAspAspAsnGlyAsnIleAlaGluGlu
 47573 : GTTCGCGGTTCAGACCCTGTACTAAAGCTTTTGGACGACAATGGGAACATTGCTGAAGAA : 47632

   141 : LeuSerIleLeuLysTrpAsnThrAspSerValGluGluPheLeuSerGluLysLeuGlu :   160
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuSerIleLeuLysTrpAsnThrAspSerValGluGluPheLeuSerGluLysLeuGlu
 47633 : CTAAGCATCCTTAAGTGGAACACAGACAGTGTAGAAGAATTCCTGAGTGAAAAGTTGGAG : 47692

   161 : ArgIle :   162
         |||:!!
         ArgLeu
 47693 : CGCTTA : 47700

vulgar: SPP00000067_2.0 0 162 . gi|444512966|gb|KB368215.1|:subseq(2183348,100000) 9999 47700 + 757 M 25 75 5 0 2 I 0 7300 3 0 2 M 56 168 5 0 2 I 0 11036 3 0 2 M 21 63 S 0 1 5 0 2 I 0 15582 3 0 2 S 1 2 M 16 48 5 0 2 I 0 3281 3 0 2 M 43 129
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-19
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	gene	10000	47700	757	+	.	gene_id 1 ; sequence SPP00000067_2.0 ; gene_orientation +
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	cds	10000	10074	.	+	.	
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	exon	10000	10074	.	+	.	insertions 0 ; deletions 0
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice5	10075	10076	.	+	.	intron_id 1 ; splice_site "GT"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	intron	10075	17378	.	+	.	intron_id 1
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice3	17377	17378	.	+	.	intron_id 0 ; splice_site "AG"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	cds	17379	17546	.	+	.	
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	exon	17379	17546	.	+	.	insertions 0 ; deletions 0
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice5	17547	17548	.	+	.	intron_id 2 ; splice_site "GT"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	intron	17547	28586	.	+	.	intron_id 2
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice3	28585	28586	.	+	.	intron_id 1 ; splice_site "AG"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	cds	28587	28650	.	+	.	
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	exon	28587	28650	.	+	.	insertions 0 ; deletions 0
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice5	28651	28652	.	+	.	intron_id 3 ; splice_site "GT"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	intron	28651	44236	.	+	.	intron_id 3
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice3	44235	44236	.	+	.	intron_id 2 ; splice_site "AG"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	cds	44237	44286	.	+	.	
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	exon	44237	44286	.	+	.	insertions 0 ; deletions 0
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice5	44287	44288	.	+	.	intron_id 4 ; splice_site "GT"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	intron	44287	47571	.	+	.	intron_id 4
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	splice3	47570	47571	.	+	.	intron_id 3 ; splice_site "AG"
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	cds	47572	47700	.	+	.	
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	exon	47572	47700	.	+	.	insertions 0 ; deletions 0
gi|444512966|gb|KB368215.1|:subseq(2183348,100000)	exonerate:protein2genome:local	similarity	10000	47700	757	+	.	alignment_id 1 ; Query SPP00000067_2.0 ; Align 10000 1 75 ; Align 17379 26 168 ; Align 28587 82 63 ; Align 44239 104 48 ; Align 47572 120 129
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
