Command line: [exonerate -m p2g --showtargetgff -q ./query/SPP00000054_2.0.fa -t ./SPP00000054_2.0.fa/gi|444721050|gb|KB320853.1|/SPP00000054_2.0.fa_gi|444721050|gb|KB320853.1|_genomic.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000054_2.0 # Protein # SECIS binding protein 2 (SBP2) # Human (Homo sapiens)
        Target: gi|444721050|gb|KB320853.1|:subseq(960000,100000) Tupaia chinensis unplaced genomic scaffold Scaffold000404_1, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 3061
   Query range: 11 -> 854
  Target range: 88419 -> 38416

    12 : GluGlyIleLysLeuSerAlaAspValLysProPheValProArgPheAlaGlyLeuAsn :    31
         :!!|||||||||||||||||||||||||||||||||||||||!:!!!.:!! !!||||||
         GlnGlyIleLysLeuSerAlaAspValLysProPheValProLysLeuSerArgLeuAsn
 88419 : CAGGGCATCAAGTTATCAGCAGATGTCAAACCCTTCGTCCCCAAATTATCCAGGCTCAAC : 88362

    32 : ValAlaTrpLeuGluSerSerGluAlaCysValPheProSerSerAlaAlaThrTyrTyr :    51
         |||||||||  !||||||||||||||||||:!!||||||.!!!!!|||||||||||||||
         ValAlaTrpLysGluSerSerGluAlaCysIlePheProGlyCysAlaAlaThrTyrTyr
 88361 : GTGGCATGGAAGGAGTCCTCAGAAGCATGTATCTTCCCCGGCTGTGCAGCCACCTATTAC : 88302

    52 : ProPheValGlnGluProProValThr{Gl}  >>>> Target Intron 1 >>>>   :    61
          !!||||||||||||||||||! !.!!{||}           14956 bp          
         SerPheValGlnGluProProGlyAla{Gl}++                         ++
 88301 : TCATTTGTTCAGGAACCACCAGGGGCT{GA}gt.........................ag : 73316

    62 : {u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPheProProGlnTyr :    80
         {|}|||||||||||||||||||||:!!|||||||||||||||.!!|||||||||||||||
         {u}GlnLysIleTyrThrGluAspValAlaPheGlyAlaSerAlaPheProProGlnTyr
 73315 : {G}CAGAAAATATATACTGAAGATGTGGCTTTCGGAGCATCCGCTTTCCCACCTCAGTAC : 73259

    81 : LeuSerSerGluIleThrLeuHisProTyrAlaTyrSerProTyrThrLeuAspSerThr :   100
         |||||||||! !|||||||||||||||||||||!:!|||||||||||||||!  |||..!
         LeuSerSerGlyIleThrLeuHisProTyrAlaPheSerProTyrThrLeuAlaSerVal
 73258 : CTGTCTTCAGGGATAACCCTTCACCCGTACGCCTTTTCCCCTTACACCCTCGCGTCGGTC : 73199

   101 : GlnAsnValTyrSerValProGlySerGlnTyrLeuTyrAsnGlnProSerCysTyrArg :   120
         ! !:!!! !  ! !!||||||||||||||||||  !|||!:!||||||||| !!|||!.!
         ProAspGlyGlyProValProGlySerGlnTyrSerTyrSerGlnProSerGlyTyrHis
 73198 : CCAGATGGCGGCCCAGTGCCTGGCTCGCAGTACAGCTACAGCCAGCCCAGCGGTTACCAC : 73139

   121 : GlyPheGlnThrValLysHisArgAsnGluAsnThrCysProLeuProGlnGluMetLys :   140
         |||.!!|||.!!!.!:!!! !|||||||||:!!.!!|||||||||! !||||||!  |||
         GlyLeuGlnAlaAlaGlnProArgAsnGluHisAlaCysProLeuArgGlnGluThrLys
 73138 : GGACTTCAAGCAGCACAGCCCCGAAACGAGCATGCCTGCCCCCTCCGCCAGGAAACAAAG : 73079

   141 : AlaLeuPheLys  >>>> Target Intron 2 >>>>  LysLysThrTyrAspGluL :   151
         ||||||  !|||            224 bp           ||||||||||||! !||||
         AlaLeuThrLys++                         ++LysLysThrTyrValGluL
 73078 : GCTCTGACTAAGgt.........................agAAAAAAACCTATGTTGAGA : 72822

   152 : ysLysThrTyrAspGlnGlnLysPheAspSerGluArgAlaAspGlyThrIleSerSerG :   171
         ||||||||! !|||:!!! !|||!!.||||||! !|||||||||||||||!  ||||||!
         ysLysThrCysAspGluProLysLeuAspSerAlaArgAlaAspGlyThrThrSerSerA
 72821 : AAAAGACATGTGATGAACCAAAGTTGGACAGTGCAAGGGCTGATGGGACTACGTCATCTG : 72762

   172 : luIleLysSerAlaArgGlySerHisHisLeuSerIleTyrAlaGluAsnSerLeuLysS :   191
          !|||!:!|||:!!!:!||||||||||||||| !!:!!      ||||||||||||||||
         laIleArgSerSerLysGlySerHisHisLeuProVal------GluAsnSerLeuLysS
 72761 : CGATCAGGTCATCTAAAGGTTCACACCACTTGCCCGTT------GAGAACAGTTTGAAGT : 72708

   192 : er{A}  >>>> Target Intron 3 >>>>  {sp}GlyTyrHisLysArgThrAspA :   200
         ||{|}           2300 bp           {||}|||     !|||||||||||||
         er{A}++                         ++{sp}Gly---SerLysArgThrAspA
 72707 : CA{G}gt.........................ag{AT}GGT---TCTAAACGAACAGATA : 70384

   201 : rgLysSerArgIleIleAlaLysAsnValSerThrSerLysProGluPheGluPheThrT :   220
         ||||||||||||||! !||||||!:!! !||||||||||||||||||||||||||||||!
         rgLysSerArgIleThrAlaLysSerGlySerThrSerLysProGluPheGluPheThrA
 70383 : GGAAATCCAGAATCACTGCAAAAAGTGGGTCTACCTCCAAGCCTGAGTTTGAGTTTACCA : 70324

   221 : hrLeuAspPheProGluLeuGlnGlyAlaGluAsn<->AsnMetSerGluIleGlnLysG :   239
          !|||||||||||||||||||||||| !!|||:!!   !:!!!:|||||||||!:!|||!
         rgLeuAspPheProGluLeuGlnGlyProGluAspGluSerIleSerGluIleArgLysH
 70323 : GGTTGGATTTCCCTGAACTGCAGGGTCCTGAGGACGAGAGTATATCAGAAATACGAAAGC : 70264

   240 : lnProLysTrpGlyProValHisSerValSerThrAspIleSerLeuLeuArgGluValV :   259
         !.||||||||||||||||||! !|||!.!||| !!! !|||||||||||| !!||||||!
         isProLysTrpGlyProValProSerAlaSerProGlyIleSerLeuLeuGlyGluValG
 70263 : ACCCCAAGTGGGGACCTGTCCCTTCTGCCTCGCCTGGCATTTCTCTTCTGGGAGAAGTGG : 70204

   260 : alLysProAlaAlaValLeuSerLys  >>>> Target Intron 4 >>>>  GlyGl :   269
          !|||||| !!||||||||| !!:!!           5706 bp           |||||
         lyLysProProAlaValLeuProGlu++                         ++GlyGl
 70203 : GAAAGCCACCTGCAGTGTTACCAGAGgt.........................agGGTGA : 64468

   270 : uIleValValLysAsnAsnProAsnGluSerValThrAlaAsnAlaAlaThrAsnSerPr :   289
         |!!:|||  !|||!!.||| !!||||||||||||! !! !||||||:!!|||!:!|||||
         uMetValLysLysLysAsnSerAsnGluSerValIleAspAsnAlaSerThrSerSerPr
 64467 : AATGGTGAAAAAAAAAAATTCAAATGAATCTGTAATTGATAATGCTTCCACCAGTTCCCC : 64408

   290 : oSerCysThrArg{G}  >>>> Target Intron 5 >>>>  {lu}LeuSerTrpTh :   298
         |||||||||||||{|}           1314 bp           {||}|||||||||||
         oSerCysThrArg{G}++                         ++{lu}LeuSerTrpTh
 64407 : TTCGTGTACAAGA{G}gt.........................ag{AG}TTGTCTTGGAC : 63067

   299 : rProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerAlaAlaProLysAs :   318
         ||||||||||||||||||||||||||||||| !!|||! !|||||| !!|||||||||||
         rProMetGlyTyrValValArgGlnThrLeuProThrGlyLeuSerProAlaProLysAs
 63066 : ACCAATGGGTTATGTTGTTCGGCAGACATTACCTACAGGACTGTCACCAGCCCCTAAAAA : 63007

   319 : nValThrSerMetIleAsnLeuLysThrIleAlaSerSerAlaAspProLysAsnValSe :   338
         |||| !!|||! !||||||:!!||||||:!!||||||:!!||||||||||||!:!|||.!
         nValProSerThrIleAsnValLysThrValAlaSerAlaAlaAspProLysSerValGl
 63006 : TGTTCCTTCCACGATAAACGTAAAGACAGTTGCTTCGGCAGCAGATCCTAAAAGTGTTGG : 62947

   339 : rIleProSerSerGluAlaLeuSerSerAspProSerTyrAsnLysGluLysHisIleIl :   358
         !!!: !!|||||||||  !! !|||||||||||||||! !!:!!:!|||||||||  !  
         yMetSerSerSerGluLeuSerSerSerAspProSerCysSerArgGluLysHisProGl
 62946 : TATGTCATCATCTGAACTTTCATCTTCGGACCCCTCCTGCAGCAGAGAGAAGCACCCCGG : 62887

   359 : eHisProThrGlnLys  >>>> Target Intron 6 >>>>  SerLysAlaSerGln :   368
         !|||||||||:!!|||           2346 bp           ||||||!.!||||||
         yHisProThrLysLys++                         ++SerLysValSerGln
 62886 : CCACCCGACTAAAAAGgt.........................agTCCAAAGTTTCACAA : 60511

   369 : GlySerAspLeuGluGlnAsnGluAlaSerArgLysAsnLysLysLysLysGluLysSer :   388
         |||.!!||||||||||||||||||.!!||||||!:!||||||||||||||||||||||||
         GlyGlyAspLeuGluGlnAsnGluThrSerArgArgAsnLysLysLysLysGluLysSer
 60510 : GGTGGCGACCTTGAACAAAATGAAACCTCAAGAAGGAATAAGAAAAAGAAGGAGAAGTCT : 60451

   389 : ThrSerLysTyrGluValLeuThrValGlnGluProProArgIleGlu  >>>> Targe :   405
         ! ! !!|||||||||..!||||||||||||||||||||||||||||||           1
         LysProLysTyrGluThrLeuThrValGlnGluProProArgIleGlu++          
 60450 : AAACCGAAATATGAAACCCTGACAGTGCAGGAGCCGCCCAGGATTGAAgt.......... : 60398

   406 : t Intron 7 >>>>  AspAlaGluGluPheProAsnLeuAlaValAlaSerGluArgA :   419
         234 bp           |||||||||||||||||||||||||||||||||||||||||||
                        ++AspAlaGluGluPheProAsnLeuAlaValAlaSerGluArgA
 60397 : ...............agGACGCCGAGGAGTTCCCCAACCTGGCAGTTGCATCTGAGAGAA : 59124

   420 : rgAspArgIleGluThrProLysPheGlnSerLysGlnGlnProGln  >>>> Target :   435
         ||||||||:!!!!:.!!|||||||||||| !!! !|||.!.||||||           22
         rgAspArgValAspAlaProLysPheGlnProThrGlnAsnProGln++           
 59123 : GAGACAGAGTAGATGCACCGAAATTTCAGCCCACACAGAACCCACAGgt........... : 59074

   436 :  Intron 8 >>>>  AspAsnPheLysAsnAsnValLysLysSerGlnLeuProValGl :   449
         24 bp           ..!||||||||||||!:!..!||||||||||||:!!||||||||
                       ++SerAsnPheLysAsnSerThrLysLysSerGlnIleProValGl
 59073 : ..............agAGTAATTTTAAAAATAGTACAAAGAAGAGCCAGATTCCCGTACA : 56810

   450 : nLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerGlnHisAlaLy :   469
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         nLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerGlnHisAlaLy
 56809 : GCTGGACTTGGGGGGAATGCTGACAGCACTGGAAAAGAAGCAGCACTCCCAGCATGCAAA : 56750

   470 : sGlnSerSerLysProValValValSer{V}  >>>> Target Intron 9 >>>>   :   479
         |||||||||||||||||||||| !!|||{|}           6514 bp           
         sGlnSerSerLysProValValPheSer{V}++                         ++
 56749 : GCAGTCCTCCAAGCCAGTGGTGTTCTCG{G}gt.........................ag : 50207

   480 : {al}GlyAlaValProValLeuSerLysGluCysAlaSerGlyGluArgGlyArgArgMe :   498
         {||}|||||||||||||||||||||||||||..!  !|||||||||||||||!.!|||.!
         {al}GlyAlaValProValLeuSerLysGluAlaMetSerGlyGluArgGlyHisArgPh
 50206 : {TC}GGAGCAGTGCCAGTCCTTTCCAAAGAAGCCATGTCGGGGGAGAGGGGCCACCGCTT : 50149

   499 : tSerGlnMetLysThrProHisAsnProLeuAspSerSerAlaProLeuMetLysLysGl :   518
         .||||||:!!||||||||||||||||||||||||||||||||||||||||||||||||||
         eSerGlnValLysThrProHisAsnProLeuAspSerSerAlaProLeuMetLysLysGl
 50148 : CAGCCAGGTGAAGACCCCGCACAACCCTTTGGACTCCAGCGCGCCCCTGATGAAGAAGGG : 50089

   519 : yLysGlnArgGluIleProLysAlaLysLysProThrSerLeuLysLys  >>>> Targ :   535
         |||||||||||||:!!|||||||||||||||||||||||||||||||||           
         yLysGlnArgGluValProLysAlaLysLysProThrSerLeuLysLys++         
 50088 : GAAGCAGAGGGAGGTCCCCAAGGCCAAGAAGCCCACCTCTCTGAAGAAGgt......... : 50036

   536 : et Intron 10 >>>>  IleIleLeuLysGluArgGlnGluArgLys<->GlnArgLe :   547
          687 bp            ||||||||||||||||||||||||||||||   ||||||||
                          ++IleIleLeuLysGluArgGlnGluArgLysGlnGlnArgLe
 50035 : .................agATAATTTTGAAAGAACGACAAGAGAGAAAACAGCAGCGCCT : 49312

   548 : uGlnGluAsnAlaValSerProAlaPheThrSerAspAspThrGlnAspGlyGluSerGl :   567
         |||||||||||||!.!|||||||||!!..!!||||||! !.!!! !|||! !||||||||
         uGlnGluAsnAlaAlaSerProAlaLeuAlaSerAspGlyAlaProAspValGluSerGl
 49311 : CCAAGAAAATGCTGCGAGCCCAGCCTTGGCCAGTGATGGTGCGCCAGATGTGGAGAGTGG : 49252

   568 : yGlyAspAspGlnPheProGluGlnAlaGluLeuSer{G}  >>>> Target Intron :   580
         |! !||||||||| !!||||||   ||||||! !!!!{|}            2506 bp 
         yAspAspAspGlnValProGlu---AlaGluProThr{G}++                  
 49251 : TGACGATGACCAAGTCCCCGAA---GCCGAGCCCACA{G}gt.................. : 49213

   581 :  11 >>>>  {ly}ProGluGlyMetAspGluLeuIleSer<->ThrProSerValGluA :   595
                   {||}|||..!!.!:!:|||||||||  !|||   ||||||:!!:!!||||
                 ++{ly}ProArgAlaValAspGluLeuAlaSerCysThrProAlaIleGluA
 49212 : ........ag{GT}CCACGGGCAGTTGATGAATTGGCTTCCTGCACTCCTGCCATCGAGG : 46662

   596 : spLysSerGluGluProProGlyThrGluLeuGlnArgAspThrGluAlaSerHisLeuA :   615
         ||:!! !!|||||||||! !|||||||||! !||||||||||||! !|||! !!  ||||
         spGlnProGluGluProLeuGlyThrGluGlnGlnArgAspThrGlyAlaTyrProLeuA
 46661 : ACCAGCCTGAAGAGCCACTGGGCACGGAGCAGCAGAGGGACACTGGAGCGTACCCACTGG : 46602

   616 : laProAsnHisThrThrPheProLysIleHisSerArgArgPheArg{As}  >>>> Ta :   631
         |||||.!.||| !!  !.!!|||||||||||||||||||||||||||{||}         
         laProGluHisProGlyLeuProLysIleHisSerArgArgPheArg{As}++       
 46601 : CGCCTGAGCACCCTGGCCTCCCCAAGATCCACAGCCGGAGATTCAGG{GA}gt....... : 46550

   632 : rget Intron 12 >>>>  {p}TyrCysSerGlnMetLeuSerLysGluValAspAla :   643
            591 bp            {|}||||||||||||||||||||||||||||||||||||
                            ++{p}TyrCysSerGlnMetLeuSerLysGluValAspAla
 46549 : ...................ag{C}TACTGCAGCCAAATGCTCAGCAAGGAGGTAGACGCC : 45927

   644 : CysValThrAspLeuLeuLysGluLeuValArgPheGlnAspArgMetTyrGlnLysAsp :   663
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         CysValThrAspLeuLeuLysGluLeuValArgPheGlnAspArgMetTyrGlnLysAsp
 45926 : TGCGTCACGGACCTCCTCAAGGAGTTGGTCCGCTTCCAGGACCGCATGTACCAGAAAGAC : 45867

   664 : ProValLysAlaLysThrLysArgArgLeuValLeuGlyLeuArgGluValLeuLysHis :   683
         |||||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||
         ProValLysAlaLysThrLysArgArgValValLeuGlyLeuArgGluValLeuLysHis
 45866 : CCCGTCAAAGCCAAGACCAAACGCCGAGTTGTGTTGGGGCTGAGGGAAGTTCTCAAGCAC : 45807

   684 : LeuLysLeuLysLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSer :   703
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuLysLeuLysLysLeuLysCysValIleIleSerProAsnCysGluLysIleGlnSer
 45806 : CTGAAGCTCAAAAAGCTCAAGTGCGTCATCATCTCCCCCAACTGTGAGAAGATCCAGTCG : 45747

   704 : Lys{G}  >>>> Target Intron 13 >>>>  {ly}GlyLeuAspAspThrLeuHi :   712
         |||{|}            6110 bp           {||}||||||||||||||||||||
         Lys{G}++                          ++{ly}GlyLeuAspAspThrLeuHi
 45746 : AAA{G}gt..........................ag{GC}GGGCTGGACGACACTCTGCA : 39610

   713 : sThrIleIleAspTyrAlaCysGluGlnAsnIleProPheValPheAlaLeuAsnArgLy :   732
         ||||||||||! !|||||||||! !|||||||||||||||||||||||||||||||||||
         sThrIleIleAlaTyrAlaCysAlaGlnAsnIleProPheValPheAlaLeuAsnArgLy
 39609 : CACCATCATCGCTTACGCCTGTGCGCAGAACATTCCCTTCGTCTTCGCCCTCAACCGCAA : 39550

   733 : sAlaLeuGlyArgSerLeuAsnLysAlaValProValSerValValGlyIlePheSerTy :   752
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         sAlaLeuGlyArgSerLeuAsnLysAlaValProValSerValValGlyIlePheSerTy
 39549 : AGCTCTGGGGCGCAGTTTGAACAAAGCAGTTCCTGTCAGCGTGGTGGGGATCTTCAGCTA : 39490

   753 : rAspGlyAlaGln  >>>> Target Intron 14 >>>>  AspGlnPheHisLysMe :   762
         |||||||||||||            270 bp            |||||||||||||||||
         rAspGlyAlaGln++                          ++AspGlnPheHisLysMe
 39489 : CGACGGGGCCCAGgt..........................agGACCAGTTCCACAAGAT : 39190

   763 : tValGluLeuThrValAlaAlaArgGlnAlaTyrLysThrMetLeuGluAsnValGlnGl :   782
         |||||||||||||:!!! !|||||||||||||||!:!!:!|||||||||!:!!.!!:!||
         tValGluLeuThrMetGluAlaArgGlnAlaTyrArgSerMetLeuGluSerAlaArgGl
 39189 : GGTCGAGCTGACGATGGAGGCCCGGCAGGCGTACAGGAGCATGCTGGAGAGTGCGCGGCA : 39130

   783 : nGluLeuValGlyGluProArgProGlnAlaProProSerLeuProThrGlnGlyProSe :   802
         |||||||!.!||||||||| !!! !||||||||||||..!! !|||..!|||||||||!!
         nGluLeuAlaGlyGluProGlyLeuGlnAlaProProGlnProProValGlnGlyProAr
 39129 : GGAGCTGGCTGGAGAGCCCGGGCTCCAGGCCCCACCCCAGCCCCCCGTGCAGGGCCCCAG : 39070

   803 : rCysProAlaGluAspGlyProProAlaLeuLysGluLysGluGluProHisTyr{I}   :   821
         !..! !!:!!|||! !.!! !!||||||! !!  ! !!:!:!!|||||||||! !{!}  
         gAlaSerSerGluGlySerAlaProAlaProThrGlyArgGlnGluProHisCys{T}++
 39069 : AGCCTCTTCTGAAGGCAGCGCCCCAGCTCCCACTGGAAGACAAGAACCACACTGC{A}gt : 39012

   822 : >>>> Target Intron 15 >>>>  {le}GluIleTrpLysLysHisLeuGluAlaT :   831
                   495 bp            { !}|||:!!|||!:!:!!!.!||||||||||
                                   ++{hr}GluValTrpArgGluArgLeuGluAlaT
 39011 : ..........................ag{CC}GAGGTCTGGAGAGAACGCCTGGAAGCGT : 38488

   832 : yrSerGlyCysThrLeuGluLeuGluGluSerLeuGluAlaSerThrSerGlnMetMetA :   851
         |||||  !|||.!!|||||||||||||||||||||||||||||||||||||||||||||!
         yrSerGlnCysAlaLeuGluLeuGluGluSerLeuGluAlaSerThrSerGlnMetMetS
 38487 : ACAGTCAGTGTGCCCTGGAGCTGGAGGAGTCGCTGGAGGCGTCGACCTCTCAGATGATGA : 38428

   852 : snLeuAsnLeu :   854
         :!|||||||||
         erLeuAsnLeu
 38427 : GCTTGAATCTT : 38417

vulgar: SPP00000054_2.0 11 854 . gi|444721050|gb|KB320853.1|:subseq(960000,100000) 88419 38416 - 3061 M 49 147 S 0 2 5 0 2 I 0 14952 3 0 2 S 1 1 M 83 249 5 0 2 I 0 220 3 0 2 M 39 117 G 2 0 M 6 18 S 0 1 5 0 2 I 0 2296 3 0 2 S 1 2 M 1 3 G 1 0 M 37 111 G 0 3 M 36 108 5 0 2 I 0 5702 3 0 2 M 26 78 S 0 1 5 0 2 I 0 1310 3 0 2 S 1 2 M 69 207 5 0 2 I 0 2342 3 0 2 M 41 123 5 0 2 I 0 1230 3 0 2 M 30 90 5 0 2 I 0 2220 3 0 2 M 44 132 S 0 1 5 0 2 I 0 6510 3 0 2 S 1 2 M 55 165 5 0 2 I 0 683 3 0 2 M 10 30 G 0 3 M 30 90 G 1 0 M 4 12 S 0 1 5 0 2 I 0 2502 3 0 2 S 1 2 M 9 27 G 0 3 M 41 123 S 0 2 5 0 2 I 0 587 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 6106 3 0 2 S 1 2 M 51 153 5 0 2 I 0 266 3 0 2 M 64 192 S 0 1 5 0 2 I 0 491 3 0 2 S 1 2 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	gene	38417	88419	3061	-	.	gene_id 1 ; sequence SPP00000054_2.0 ; gene_orientation +
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	88271	88419	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	88271	88419	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	88269	88270	.	-	.	intron_id 1 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	73315	88270	.	-	.	intron_id 1
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	73315	73316	.	-	.	intron_id 0 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	73065	73314	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	73065	73314	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	73063	73064	.	-	.	intron_id 2 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	72841	73064	.	-	.	intron_id 2
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	72841	72842	.	-	.	intron_id 1 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	72705	72840	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	72705	72840	.	-	.	insertions 0 ; deletions 2
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	72703	72704	.	-	.	intron_id 3 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	70405	72704	.	-	.	intron_id 3
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	70405	70406	.	-	.	intron_id 2 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	70178	70404	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	70178	70404	.	-	.	insertions 3 ; deletions 1
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	70176	70177	.	-	.	intron_id 4 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	64472	70177	.	-	.	intron_id 4
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	64472	64473	.	-	.	intron_id 3 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	64393	64471	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	64393	64471	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	64391	64392	.	-	.	intron_id 5 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	63079	64392	.	-	.	intron_id 5
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	63079	63080	.	-	.	intron_id 4 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	62870	63078	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	62870	63078	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	62868	62869	.	-	.	intron_id 6 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	60524	62869	.	-	.	intron_id 6
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	60524	60525	.	-	.	intron_id 5 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	60401	60523	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	60401	60523	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	60399	60400	.	-	.	intron_id 7 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	59167	60400	.	-	.	intron_id 7
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	59167	59168	.	-	.	intron_id 6 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	59077	59166	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	59077	59166	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	59075	59076	.	-	.	intron_id 8 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	56853	59076	.	-	.	intron_id 8
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	56853	56854	.	-	.	intron_id 7 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	56720	56852	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	56720	56852	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	56718	56719	.	-	.	intron_id 9 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	50206	56719	.	-	.	intron_id 9
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	50206	50207	.	-	.	intron_id 8 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	50039	50205	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	50039	50205	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	50037	50038	.	-	.	intron_id 10 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	49352	50038	.	-	.	intron_id 10
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	49352	49353	.	-	.	intron_id 9 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	49216	49351	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	49216	49351	.	-	.	insertions 3 ; deletions 1
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	49214	49215	.	-	.	intron_id 11 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	46710	49215	.	-	.	intron_id 11
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	46710	46711	.	-	.	intron_id 10 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	46553	46709	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	46553	46709	.	-	.	insertions 3 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	46551	46552	.	-	.	intron_id 12 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	45962	46552	.	-	.	intron_id 12
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	45962	45963	.	-	.	intron_id 11 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	45741	45961	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	45741	45961	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	45739	45740	.	-	.	intron_id 13 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	39631	45740	.	-	.	intron_id 13
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	39631	39632	.	-	.	intron_id 12 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	39476	39630	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	39476	39630	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	39474	39475	.	-	.	intron_id 14 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	39206	39475	.	-	.	intron_id 14
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	39206	39207	.	-	.	intron_id 13 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	39013	39205	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	39013	39205	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice5	39011	39012	.	-	.	intron_id 15 ; splice_site "GT"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	intron	38518	39012	.	-	.	intron_id 15
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	splice3	38518	38519	.	-	.	intron_id 14 ; splice_site "AG"
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	cds	38417	38517	.	-	.	
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	exon	38417	38517	.	-	.	insertions 0 ; deletions 0
gi|444721050|gb|KB320853.1|:subseq(960000,100000)	exonerate:protein2genome:local	similarity	38417	88419	3061	-	.	alignment_id 1 ; Query SPP00000054_2.0 ; Align 88420 12 147 ; Align 73314 62 249 ; Align 72841 145 117 ; Align 72724 186 18 ; Align 70403 193 3 ; Align 70400 195 111 ; Align 70286 232 108 ; Align 64472 268 78 ; Align 63077 295 207 ; Align 60524 364 123 ; Align 59167 405 90 ; Align 56853 435 132 ; Align 50204 480 165 ; Align 49352 535 30 ; Align 49319 545 90 ; Align 49229 576 12 ; Align 46708 581 27 ; Align 46678 590 123 ; Align 45961 632 219 ; Align 39629 706 153 ; Align 39206 757 192 ; Align 38516 822 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
