
genewise output
Score 294.63 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001617_2.0    1 MAAGPSGGLGPAFGLRLLLATVLQA                       M 
                     MAAGPSGGLGPAFGLRLLLATVLQA                       M 
                     MAAGPSGGLGPAFGLRLLLATVLQA                       M 
gi|432107065|gb50000 agggcaggcgcgtgcatctgagccgGTGAGTG  Intron 1   CAGa 
                     tccgcgggtgcctgtgtttccttac<0-----[50075:57819]-0>t 
                     ggtaacagtgggtgggggggtggag                       g 


SPP00001617_2.0   27 SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
                     SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
gi|432107065|gb57823 tgtgggtttggtagtgttaatctattgccgctaccccgcgtagttcggg 
                     cctgcatccacggatgtcgattggcgattgatattatacagggggaaac 
                     tccgagtaagtcagacccccgccccttttagccgtggttctaactgaga 


SPP00001617_2.0   76 QFENKK                       LYAGAILEVCGXKLGRFPQV 
                     QFENKK                       LYAGAILEVCGXKLGRFPQV 
                     QFENKK                       LYAGAILEVCGXKLGRFPQV 
gi|432107065|gb57970 ctgaaaGTATTGT  Intron 2   CAGctgggacggtgtatgatccg 
                     ataaaa<0-----[57988:75243]-0>tacgcttatgggatggtcat 
                     atacag                       ataatttactaaagggcaac 


SPP00001617_2.0  102 Q                          FVRSDKPKLFRGLQIK       
                     Q                          FVRSDKPKLFRGLQIK       
                     Q          A:A[gct]        FVRSDKPKLFRGLQIK       
gi|432107065|gb75304 cGGTATGTA  Intron 3   AAGCTtgaagacactagccaa       
                     a <1-----[75308:81101]-1>  ttggaacattggtata       
                     a                          tcattacaacaagacg       


SPP00001617_2.0  120                        YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDDNGNIAEELSILK 
                                            YVRGSDPVLKLLDDNGNIAEELSILK 
gi|432107065|gb81152 GTAAGGT  Intron 4   CAGtgcgtgcgcactggagaagggcaaca 
                     <0-----[81152:81995]-0>atggcacttattaaagatcaatgtta 
                                            ttttactaagtgtctgcttaaaccca 


SPP00001617_2.0  146 WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
                     WNTDSVEEFLSEKLERI                                 
gi|432107065|gb82074 taagagggtcagatgca                                 
                     gacagtaattgaatagt                                 
                     gcactcaatgtagggca                                 


//
Making a A in phase 1 intron
>gi|432107065|gb|KB105184.1|:subseq(1997890,100080).pep
MAAGPSGGLGPAFGLRLLLATVLQAMSAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNL
LQLDPDCRGCCQEEAQFENKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKY
VRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFLSEKLERI
//
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	match	50000	82124	294.63	+	.	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	cds	50000	50074	0.00	+	0	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	intron	50075	57819	0.00	+	.	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	cds	57820	57987	0.00	+	0	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	intron	57988	75243	0.00	+	.	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	cds	75244	75307	0.00	+	0	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	intron	75308	81101	0.00	+	.	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	cds	81102	81151	0.00	+	2	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	intron	81152	81995	0.00	+	.	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	cds	81996	82124	0.00	+	0	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
//

genewise output
Score 16.78 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001617_2.0    5 PSGGLGPAFG                                        
                     P+GGLGP  G                                        
                     PAGGLGPLPG                                        
gi|432107065|g-44558 cgggtgcccg                                        
                     ccggtgctcg                                        
                     ttttacgctg                                        


//
>gi|432107065|gb|KB105184.1|:subseq(1997890,100080).pep
PAGGLGPLPG
//
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	match	44558	44529	16.78	-	.	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
gi|432107065|gb|KB105184.1|:subseq(1997890,100080)	GeneWise	cds	44558	44529	0.00	-	0	gi|432107065|gb|KB105184.1|:subseq(1997890,100080)-genewise-prediction-1
//
