
genewise output
Score 277.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000041_2.0   68 KVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEP 
                     +V+LV NVASDC+LTD NYL L+ LH+EFGP HFSVLAFPCNQFGE+EP 
                     EVTLVANVASDCRLTDSNYLALQALHREFGPFHFSVLAFPCNQFGEAEP 
gi|432105502|gb32637 ggacggaggagtccagaatcgccgcccgtgctctagcgtctactggggc 
                     atcttcatcgaggtcagaatctactagatgctatgttctcgaatgacac 
                     gcgggccgccccgccccccggggggccgcgcccccggcccccgcggcgc 


SPP00000041_2.0  117 RPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLV           
                     RPS+EV SFAR  YGVTFPIFHKIK+LG E EPAFRFLV           
                     RPSREVVSFARSTYGVTFPIFHKIKVLGPEAEPAFRFLV           
gi|432105502|gb32784 ccaagggttgaaatggatcatcaaagcgcgggcgtctcg           
                     gcggattctcggcagtctcttaatattgcacacctgttt           
                     cccggcgcccgcccgcccccccgtgcggcacgccccctc           


SPP00000041_2.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SS KEPRWNFWKYLV+PEG+VV+ 
                               D:D[gat]        SSNKEPRWNFWKYLVSPEGRVVR 
gi|432105502|gb32901 GGTGAGTG  Intron 1   CAGATttaagcatattatcgacggcgga 
                      <1-----[32902:50015]-1>  ccaaacggatgaattgcaggttg 
                                               tccgggggccggcgcccgccgcg 


SPP00000041_2.0  180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                      W+PEEP++ IRP++A L+RQ+II+K+EDL                    
                     SWRPEEPVDAIRPEVADLIRQMIIRKREDL                    
gi|432105502|gb50087 ttacggcgggaccggggcaccaaacaaggc                    
                     cggcaactactgcatcattgatttgagaat                    
                     cggcggcgcccgtggctgcgggctagggcc                    


//
Making a D in phase 1 intron
>gi|432105502|gb|KB105949.1|:subseq(6910273,100176).pep
EVTLVANVASDCRLTDSNYLALQALHREFGPFHFSVLAFPCNQFGEAEPRPSREVVSFAR
STYGVTFPIFHKIKVLGPEAEPAFRFLVDSSNKEPRWNFWKYLVSPEGRVVRSWRPEEPV
DAIRPEVADLIRQMIIRKREDL
//
gi|432105502|gb|KB105949.1|:subseq(6910273,100176)	GeneWise	match	32637	50176	277.07	+	.	gi|432105502|gb|KB105949.1|:subseq(6910273,100176)-genewise-prediction-1
gi|432105502|gb|KB105949.1|:subseq(6910273,100176)	GeneWise	cds	32637	32901	0.00	+	0	gi|432105502|gb|KB105949.1|:subseq(6910273,100176)-genewise-prediction-1
gi|432105502|gb|KB105949.1|:subseq(6910273,100176)	GeneWise	intron	32902	50015	0.00	+	.	gi|432105502|gb|KB105949.1|:subseq(6910273,100176)-genewise-prediction-1
gi|432105502|gb|KB105949.1|:subseq(6910273,100176)	GeneWise	cds	50016	50176	0.00	+	2	gi|432105502|gb|KB105949.1|:subseq(6910273,100176)-genewise-prediction-1
//

genewise output
Score 16.83 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000041_2.0   18 VFAVLLSIVLCTVTL                                   
                     +F + +++VLC + L                                   
                     IFLIYITLVLCALLL                                   
gi|432105502|g-34348 atcataacgttgttt                                   
                     ttttatctttgcttt                                   
                     ttcttccgtacggag                                   


//
>gi|432105502|gb|KB105949.1|:subseq(6910273,100176).pep
IFLIYITLVLCALLL
//
gi|432105502|gb|KB105949.1|:subseq(6910273,100176)	GeneWise	match	34348	34304	16.83	-	.	gi|432105502|gb|KB105949.1|:subseq(6910273,100176)-genewise-prediction-1
gi|432105502|gb|KB105949.1|:subseq(6910273,100176)	GeneWise	cds	34348	34304	0.00	-	0	gi|432105502|gb|KB105949.1|:subseq(6910273,100176)-genewise-prediction-1
//
