
genewise output
Score 166.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001633_2.0   21 ASQSIKSISSGSCRDRKNCKVVFSQQELRKRLTPLQYHVTQEKGTE    
                     AS S+  +  GSCRDRKNCKVVFSQQELRKRLTPLQYHVTQEKGTE    
                     ASSSLSFLFPGSCRDRKNCKVVFSQQELRKRLTPLQYHVTQEKGTE    
gi|432093882|gb47978 gttttttctcgttagaaataggttccgcaaccaccctcgacgagag    
                     cccctctttcgcggagaagatttcaaatgagtcctaaatcaaagca    
                     ccctactctagatgtagctggctcggagggggacggttctggagca    


SPP00001633_2.0   67                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AFEGEYTHHKDPGIYKCVVCGTP 
                                S:S[agt]       AFEGEYTHHKDPGIYKCVVCGTP 
gi|432093882|gb48116 AGGTAAGGT  Intron 1   CAGTgtgggtaccagcgatatggtgac 
                       <2-----[48118:50001]-2> ctagaacaaaacgtaagttggcc 
                                               ccaaatttcattaatattctata 


SPP00001633_2.0   91 LF                          SETKFDSGSG            
                     LF                          SETKFDSGSG            
                     LF           K:K[aag]       SETKFDSGSG            
gi|432093882|gb50072 ttAAGTAAGTA  Intron 2   CAGGtgaatgtgtg            
                     tt  <2-----[50080:91859]-2> cacatacgcg            
                     gc                          aacatcttat            


//
Making a S in phase 2 intron
Making a K in phase 2 intron
>gi|432093882|gb|KB111605.1|:subseq(1324020,100080).pep
ASSSLSFLFPGSCRDRKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPG
IYKCVVCGTPLFKSETKFDSGSG
//
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	match	47978	91890	166.61	+	.	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	cds	47978	48117	0.00	+	0	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	intron	48118	50001	0.00	+	.	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	cds	50002	50079	0.00	+	1	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	intron	50080	91859	0.00	+	.	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	cds	91860	91890	0.00	+	1	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
//

genewise output
Score 23.24 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001633_2.0   10 PLSLCLCVCL                                        
                     PLS+C+CVC+                                        
                     PLSVCICVCV                                        
gi|432093882|g-93027 ccagtatgtg                                        
                     ctgtgtgtgt                                        
                     cctgtatgtg                                        


//
>gi|432093882|gb|KB111605.1|:subseq(1324020,100080).pep
PLSVCICVCV
//
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	match	93027	92998	23.24	-	.	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
gi|432093882|gb|KB111605.1|:subseq(1324020,100080)	GeneWise	cds	93027	92998	0.00	-	0	gi|432093882|gb|KB111605.1|:subseq(1324020,100080)-genewise-prediction-1
//
