
genewise output
Score 959.30 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001616_2.0    1 MNPESFAAGERLVSPAYVRQGCEARRTHEHLIRLLLEQ            
                     MNPESFAAGERLVSPAYVRQGCEARRTH                      
                     MNPESFAAGERLVSPAYVRQGCEARRTH---------E            
gi|432091658|gb18967 aacgatggggacgtcgtgccgtggccac         g            
                     tacagtccgagttcccatgaggacggca         a            
                     gcggtcgctggggggccgggctgcccgc         g            


SPP00001616_2.0   39                        GKCPEDGWDESTLELFLHELAIMDSN 
                                            GKCPEDGWDESTLELFLHELAIMDSN 
                                            GKCPEDGWDESTLELFLHELAIMDSN 
gi|432091658|gb19054 NNNNNNN  Intron 1   AAGgatcgggtggaacgctccgcgaagaa 
                     <0-----[19054:20102]-0>gagcaaggaagctatttaatcttaga 
                                            catagttgtatatactataggcgccc 


SPP00001616_2.0   65 NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRVASALVARRHY           R:R[agg]      
gi|432091658|gb20181 atcgatggggcggaggtgtggccctAGGTATTTT  Intron 2      
                     attgaggtgagaggtcccttcggaa  <2-----[20258:23745]   
                     tcgccttgaagagagtgtattgttc                         


SPP00001616_2.0   90     FIHGIGRSGDISAVQPKAAGSSLLNKIANSLVLDIIKMA       
                         FIHGIGRSGDISAVQPKAAGSSLLNKIANSLVLDIIKMA       
                         FIHGIGRSGDISAVQPKAAGSSLLNKIANSLVLDIIKMA       
gi|432091658|gb23743 TAGGtacgagctggatggccagggtactaaagattgcgaaaag       
                     -2> ttagtggcgatcctacaccgcgttaatcactttattatc       
                         cttataaatttttgaaatattctgcatcttgcgccaggt       


SPP00001616_2.0  130                           VHTVTNCFVVPMATGMSLTLCFL 
                                               VHTVTNCFVVPMATGMSLTLCFL 
                               G:G[ggt]        VHTVTNCFVVPMATGMSLTLCFL 
gi|432091658|gb23864 GGTATGTA  Intron 3   TAGGTgcagaattggcagagaacacttt 
                      <1-----[23865:24868]-1>  tactcagtttctccgtgtctgtt 
                                               ctagctctagtgattgtatgtcg 


SPP00001616_2.0  154 TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
                     TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
                     TLRHKRPKAKYIIWPRIDQKSCFKSMITA                     
gi|432091658|gb24940 atccaacagataatccagcatttataaag                     
                     ctgaagcacaattgcgtaaacgtacttcc                     
                     aaacaaagagttagaaacggcctacgcta                     


SPP00001616_2.0  183                           FEPVVIENVLEGDELRTDLKAVE 
                                               FEPVVIENVLEGDELRTDLKAVE 
                               G:G[ggt]        FEPVVIENVLEGDELRTDLKAVE 
gi|432091658|gb25027 GGTAAAAG  Intron 4   TAGGTtgcggagagtggggccagcaggg 
                      <1-----[25028:29390]-1>  tactttaattagaatgcatacta 
                                               tgcggagctaattggcacgaaaa 


SPP00001616_2.0  207 AKIQELGSDNVLCVHSTTSCFAPRVPD                       
                     AKIQELGSDNVLCVHSTTSCFAPRVPD                       
                     AKIQELGSDNVLCVHSTTSCFAPRVPD           R:R[aga]    
gi|432091658|gb29462 gaacgcgtgagctgctaatttgcagcgAGGTAAATG  Intron 5    
                     cataatgcaattgtaccccgtccgtca  <2-----[29545:32696] 
                     tacgatgtttgttttttactttagatc                       


SPP00001616_2.0  234     LEELAVICASYGVPHIVNNAYGLQSSKCMHLIQQ            
                         LEELAVICASYGVPHIVNNAYGLQSSKCMHLIQQ            
                         LEELAVICASYGVPHIVNNAYGLQSSKCMHLIQQ            
gi|432091658|gb32694 TAGAtggcggatgttggccagaagtgtcttataccacc            
                     -2> taatcttgccagtcattaacagtaccagtattaa            
                         aaagtgttttcttattcctttagatagtgcctgg            


SPP00001616_2.0  269                        GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRID FVQSLDKNFMVPVGGAI 
                                            GARVGRIDVFVQSLDKNFMVPVGGAI 
gi|432091658|gb32800 GTAAGAG  Intron 6   TAGggcggaaggtgcatgaatagcgggga 
                     <0-----[32800:39614]-0>gcgtggtatttagtaaatttctggct 
                                            gtgttaactctgcgcattgtaatcta 


SPP00001616_2.0  295 IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFNDSFIQEISKMYP                          RASASP 
                     IAGFNDSFIQEISKMYP          G:G[gga]        RASASP 
gi|432091658|gb39693 aggtagttacgaaaatcGGTAAATA  Intron 7   CAGGAagtgtc 
                     tcgtaacttaatgatac <1-----[39745:39874]-1>  gccccc 
                     ttctttcctgaccggta                          atatat 


SPP00001616_2.0  319 SLDVLITLLSLGSNGYKKLLKERK                       EM 
                     SLDVLITLLSLGSNGYKKLLKERK                       EM 
                     SLDVLITLLSLGSNGYKKLLKERK                       EM 
gi|432091658|gb39895 ttggcaatttcgtagtaactagaaGTAAGCT  Intron 8   CAGga 
                     ctatttcttctgcagaaattaaga<0-----[39967:48244]-0>at 
                     tatctttaaataatctggaaaaag                       ag 


SPP00001616_2.0  345 FSYLSIQLKKLAEAYDERLLHTPHNPISL                     
                     FSYLSIQLKKLAEAYDERLLHTPHNPISL                     
                     FSYLSIQLKKLAEAYDERLLHTPHNPISL                     
gi|432091658|gb48251 tttttaccaacgggtggacccaccacatt                     
                     tcatctataatcacaaagttaccaactct                     
                     tatgtcaggggcacctaaggtatcccata                     


SPP00001616_2.0  374                           MTLKTLDEHRDKAVTQLGSMLFT 
                                               MTLKTLDEHRDKAVTQLGSMLFT 
                               A:A[gct]        MTLKTLDEHRDKAVTQLGSMLFT 
gi|432091658|gb48338 GGTAATTT  Intron 9   CAGCTaacaacggccgaggaccgtacta 
                      <1-----[48339:50000]-1>  tctactaaagaactcatgctttc 
                                               gatgaatgctcatctgtcagttc 


SPP00001616_2.0  398 RQVSGA                          VVPLGAVQTVSGYTFRG 
                     RQVSGA                          VVPLGAVQTVSGYTFRG 
                     RQVSGA           R:R[aga]       VVPLGAVQTVSGYTFRG 
gi|432091658|gb50072 acgtggAGGTAATTA  Intron 10  TAGAggccgggcagagtatcg 
                     gatcgc  <2-----[50092:51437]-2> ttctgctactggactgg 
                     agttac                          tgttgtgatgtcctcac 


SPP00001616_2.0  422 FMSHTNDYPCAYLNAASAIGMKTQDVDLFIKRLDKCFKIVRKEQNRESD 
                     FMSHTNDYPCAYLNAASAIGMKTQDVDLFIKRLDKCFKIVRKEQNRESD 
                     FMSHTNDYPCAYLNAASAIGMKTQDVDLFIKRLDKCFKIVRKEQNRESD 
gi|432091658|gb51490 tatcaagtctgtcaggtgagaaacgggttaaacgattaagaagcaagag 
                     ttcacaaacgcatacccctgtacaatatttagtaagtattgaaaagaga 
                     cgatatttttcccttgaccaggagtgcgcagagcgtcgaaaaaatagtt 


SPP00001616_2.0  471 GSGVDNDKTEDVVIEEMGLKLEN                           
                     GSGVDNDKTEDVVI+EMGLKLEN                           
                     GSGVDNDKTEDVVIDEMGLKLEN                           
gi|432091658|gb51637 gtgggagaaggggaggagtacga                           
                     gcgtaaaacaatttaatgtataa                           
                     atatctcatatgtttagtaaagt                           


//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>gi|432091658|gb|KB112772.1|:subseq(1721870,100092).pep
MNPESFAAGERLVSPAYVRQGCEARRTHEGKCPEDGWDESTLELFLHELAIMDSNNFLGN
CGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKIANSLVLDIIKMA
GVHTVTNCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVI
ENVLEGDELRTDLKAVEAKIQELGSDNVLCVHSTTSCFAPRVPDRLEELAVICASYGVPH
IVNNAYGLQSSKCMHLIQQGARVGRIDVFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM
YPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSIQLKKLAEAYDERLLHTPHN
PISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGAVQTVSGYTFRGFMSHTNDY
PCAYLNAASAIGMKTQDVDLFIKRLDKCFKIVRKEQNRESDGSGVDNDKTEDVVIDEMGL
KLEN
//
>gi|432091658|gb|KB112772.1|:subseq(1721870,100092).[18967:51705].sp
ATGAACCCGGAGAGTTTCGCGGCCGGTGAGAGGCTGGTGTCGCCGGCCTACGTGCGGCAG
GGCTGTGAGGCCCGCCGCACGCACGAGGGCAAATGTCCAGAGGATGGTTGGGATGAAAGT
ACACTTGAACTCTTTCTACATGAACTGGCGATCATGGACAGCAACAATTTCCTGGGCAAC
TGTGGTGTGGGAGAACGGGAAGGGAGAGTGGCTTCGGCTTTAGTTGCTCGGCGTCATTAC
AGGTTCATTCATGGAATTGGACGATCAGGTGATATTTCTGCTGTGCAACCAAAAGCTGCA
GGTTCTAGCCTTTTGAACAAAATTGCCAATTCTTTGGTCCTGGACATCATAAAGATGGCT
GGTGTCCATACAGTGACCAATTGCTTTGTAGTGCCTATGGCAACTGGTATGAGTCTAACT
CTGTGTTTCTTGACATTACGACACAAAAGACCAAAGGCAAAGTATATTATATGGCCACGA
ATAGACCAGAAGTCCTGCTTTAAATCCATGATCACTGCAGGTTTTGAGCCCGTGGTGATA
GAGAACGTTTTAGAAGGTGATGAGCTGCGCACAGACCTGAAAGCAGTAGAAGCTAAAATC
CAGGAACTTGGGTCTGATAATGTGCTTTGTGTTCATTCTACTACATCCTGTTTTGCTCCA
AGGGTACCTGACAGATTAGAAGAACTGGCTGTGATTTGTGCTTCTTACGGTGTTCCACAT
ATTGTCAACAATGCTTATGGATTGCAATCTTCAAAGTGTATGCACCTCATTCAGCAGGGG
GCTCGGGTTGGTAGAATAGACGTTTTCGTTCAGAGCTTGGACAAAAATTTTATGGTTCCA
GTAGGTGGCGCTATAATTGCTGGCTTTAATGATTCCTTCATTCAGGAAATCAGCAAGATG
TATCCAGGAAGAGCTTCAGCTTCACCTTCTTTAGATGTCCTTATTACTTTATTATCACTT
GGATCAAATGGCTATAAGAAGCTATTAAAAGAAAGAAAGGAAATGTTTTCATATTTGTCT
ATCCAACTGAAGAAGCTGGCCGAAGCCTACGATGAAAGACTGCTGCATACACCTCACAAC
CCCATATCTTTAGCTATGACACTTAAGACACTAGATGAGCACCGTGACAAAGCTGTCACT
CAGCTTGGCTCAATGCTTTTTACCAGACAGGTTTCTGGAGCCAGAGTTGTGCCTCTTGGG
GCTGTGCAAACTGTGAGTGGCTACACTTTCCGAGGCTTCATGTCACATACAAATGATTAT
CCTTGTGCCTACCTCAATGCTGCGTCAGCCATCGGAATGAAGACACAGGATGTGGACTTG
TTCATAAAGAGACTGGACAAGTGTTTCAAGATAGTAAGAAAAGAACAAAATAGAGAGAGT
GATGGATCTGGAGTTGACAATGACAAAACTGAAGATGTGGTTATTGATGAAATGGGTTTA
AAACTAGAGAAT
//
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	match	18967	51705	967.28	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	18967	19053	0.00	+	0	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	19054	20102	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	20103	20257	0.00	+	0	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	20258	23745	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	23746	23864	0.00	+	1	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	23865	24868	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	24869	25027	0.00	+	2	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	25028	29390	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	29391	29544	0.00	+	2	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	29545	32696	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	32697	32799	0.00	+	1	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	32800	39614	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	39615	39744	0.00	+	0	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	39745	39874	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	39875	39966	0.00	+	2	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	39967	48244	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	48245	48338	0.00	+	0	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	48339	50000	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	50001	50091	0.00	+	2	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	intron	50092	51437	0.00	+	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	51438	51705	0.00	+	1	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
//

genewise output
Score 19.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001616_2.0  211 ELGSDNVLCVHSTTSCFAPR                              
                     EL SD+VLC      C+A R                              
                     ELFSDSVLCEDGWLECWAVR                              
gi|432091658|g-98292 gcttgtgctgggtcgttgga                              
                     attcacttgaaggtaggctg                              
                     atcttggttataggacgaga                              


//
>gi|432091658|gb|KB112772.1|:subseq(1721870,100092).pep
ELFSDSVLCEDGWLECWAVR
//
>gi|432091658|gb|KB112772.1|:subseq(1721870,100092).[98292:98231].sp
GAACTTTTCTCTGATTCGGTGCTTTGTGAAGATGGATGGCTGGAATGCTGGGCAGTGAGA
//
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	match	98292	98233	19.00	-	.	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
gi|432091658|gb|KB112772.1|:subseq(1721870,100092)	GeneWise	cds	98292	98233	0.00	-	0	gi|432091658|gb|KB112772.1|:subseq(1721870,100092)-genewise-prediction-1
//
