
genewise output
Score 17.05 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000060_2.0  150 DAAEEAGTSVTGGQTVLNPWIVL                           
                     D  E    ++TG QT    W+VL                           
                     DETETQACTLTGNQTGTFLWLVL                           
gi|432086308|gb46791 ggagacgtacagacagatcttgc                           
                     aacacacgctcgaacgcttgttt                           
                     tgaacgatcgtgtatccttgacc                           


//
>gi|432086308|gb|KB116581.1|:subseq(1201308,100098).pep
DETETQACTLTGNQTGTFLWLVL
//
>gi|432086308|gb|KB116581.1|:subseq(1201308,100098).[46791:46859].sp
GATGAGACAGAAACCCAGGCATGTACCCTGACTGGGAATCAAACTGGCACCTTTCTTTGG
TTAGTCCTC
//
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	match	46791	46859	17.05	+	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	46791	46859	0.00	+	0	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
//

genewise output
Score 680.46 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000060_2.0    1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
                     MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
                     MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH 
gi|432086308|g-62458 atacgttacgatgtgaatctaatagcagagtagccggtcatcgttcgac 
                     tccgactacagaataagtgtcgtcatagcggatcaattaattactaaaa 
                     gtaggttcgattagcgccaaaattaggctccagcatcggaggacaaacc 


SPP00000060_2.0   50 FQEDEQFLGAVMPRL                          IGMDTCVI 
                     FQEDEQFLGAVMPRL                          IGMDTCVI 
                     FQEDEQFLGAVMPRL          G:G[ggt]        IGMDTCVI 
gi|432086308|g-62311 tcgggctcgggacacGGTATGTG  Intron 1   CAGGTagagatga 
                     taaaaattgcttcgt <1-----[62265:55255]-1>  tgtacgtt 
                     caatggtgaatgagt                          tggtttct 


SPP00000060_2.0   74 PLRHGGLSLVQTTDYIYPIVDDPYMM                        
                     PLRHGGLSLVQTTDYIYPIVDDPYMM                        
                     PLRHGGLSLVQTTDYIYPIVDDPYMM                        
gi|432086308|g-55228 ctacggcttgcaagtatcagggctaaGTAAGTT  Intron 2   CAG 
                     ctgaggtcttaccaatacttaacatt<0-----[55150:52919]-0> 
                     tggttttcggacatctttcctctcgg                        


SPP00000060_2.0  100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR              
                     GRIACANVLSDLYAMGVTECDNMLMLLG+SNKMTDR              
                     GRIACANVLSDLYAMGVTECDNMLMLLGISNKMTDR              
gi|432086308|g-52918 gaagtgagcagctgaggagtgaacaccgaaaaaaga              
                     ggtcgcattgatactgtcagaatttttgtgaatcag              
                     cgaatctactcctaggcaatctgggctacttagctg              


SPP00000060_2.0  136                        ERDKVMPLIIQGFKDAAEEAGTSVTG 
                                            ERDKVMPLIIQGFKDAAEEA  SVTG 
                                            ERDKVMPLIIQGFKDAAEEAEASVTG 
gi|432086308|g-52810 GTAAGTA  Intron 3   TAGgagagaccaacgtaggggggggtgag 
                     <0-----[52810:51855]-0>agaattctttagtaaccaacacctcg 
                                            agtaggcatagttataaggaagtagc 


SPP00000060_2.0  162 GQTVLNPWIVLGGVATTVCQPNEFI                         
                      QTVLNPWIVLGGVATTVCQPNEFI                         
                     RQTVLNPWIVLGGVATTVCQPNEFI           M:M[atg]      
gi|432086308|g-51776 acagtactagtggggaagtccagtaATGTAAGTT  Intron 4      
                     gacttacgtttggtccctgacaatt  <2-----[51699:50091]   
                     aaagaccgttgaagtatccgctacc                         


SPP00000060_2.0  187     PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
                         PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
                         PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI                
gi|432086308|g-50093 CAGGcgaggcgggcgcaaccgacgggggccttga                
                     -2> caactcgattttcactgcatctctaagtat                
                         gtcagtgtggtgcgcgggagcgtgcgggtt                


SPP00000060_2.0  218                        PEKWNKIKLVVTQEDVELAYQEAMMN 
                                            PEKWNKIKLVVTQEDVELAYQEAMMN 
                                            PEKWNKIKLVVTQEDVELAYQEAMMN 
gi|432086308|g-49999 GTGAGTA  Intron 5   TAGcgataaaacggacggggtgtcggaaa 
                     <0-----[49999:47747]-0>caagaatatttcaaatatcaaactta 
                                            taggtataagctaatgggacgggggt 


SPP00000060_2.0  244 MARLNRT                          GLLICLPREQAARFCA 
                     MARLNRT                          GLLICLPREQAARFCA 
                     MARLNRT          G:G[gga]        GLLICLPREQAARFCA 
gi|432086308|g-47668 agacaaaGGTATTGG  Intron 6   CAGGAgccattccgcggcttg 
                     tcgtagc <1-----[47646:36286]-1>  gtttgtcgaaccgtgc 
                     gagccaa                          ctactaatgaatgcta 


SPP00000060_2.0  268 EIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPT 
                     EIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPT 
                     EIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPT 
gi|432086308|g-36235 gaatcatgggccgtaagaggagacagaaagaccaagggccggacagaca 
                     ataccaagagaacgttgttaagagccgttaacgttatccatccaatacc 
                     gagtcattatcaagttgcaggcctacacacacgccacaaggctatgtca 


SPP00000060_2.0  317 PGATS                                             
                     PGATS                                             
                     PGATS                                             
gi|432086308|g-36088 cggat                                             
                     cgccc                                             
                     ttcct                                             


//
Making a G in phase 1 intron
Making a M in phase 2 intron
Making a G in phase 1 intron
>gi|432086308|gb|KB116581.1|:subseq(1201308,100098).pep
MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV
MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD
NMLMLLGISNKMTDRERDKVMPLIIQGFKDAAEEAEASVTGRQTVLNPWIVLGGVATTVC
QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA
MMNMARLNRTGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPR
IIEVAPQVATQNVNPTPGATS
//
>gi|432086308|gb|KB116581.1|:subseq(1201308,100098).[62458:36072].sp
ATGTCTACACGGGAGTCTTTTAACCCGGAAAGTTATGAATTGGACAAGAGCTTCCGATTA
ACAAGATTTACTGAACTGAAGGGCACTGGCTGCAAAGTGCCCCAAGATGTCTTGCAGAAA
TTGCTGGAATCCTTACAAGAAAACCACTTCCAAGAAGATGAGCAGTTTCTGGGAGCAGTT
ATGCCAAGGCTTGGTATTGGGATGGATACTTGTGTCATTCCTTTGAGGCATGGTGGTCTT
TCCTTGGTGCAAACCACAGATTACATTTATCCTATCGTCGATGACCCTTACATGATGGGC
AGGATAGCATGTGCCAATGTACTCAGTGACCTCTATGCAATGGGGGTCACAGAATGTGAC
AATATGCTGATGCTCCTTGGAATCAGTAATAAAATGACCGATAGGGAAAGGGATAAAGTG
ATGCCCCTAATTATACAGGGTTTTAAAGATGCAGCAGAGGAGGCAGAAGCGTCTGTAACG
GGCAGACAAACAGTGTTAAACCCCTGGATTGTTTTGGGAGGAGTGGCTACAACTGTCTGC
CAGCCCAATGAATTCATCATGCCGGATAACGCAGTGCCTGGGGATGTGCTGGTTCTGACC
AAGCCCCTGGGGACGCAAGTGGCCGTGGCTGTGCACCAGTGGTTGGATATTCCTGAAAAG
TGGAATAAAATTAAACTAGTGGTCACTCAAGAAGATGTGGAGTTGGCATACCAGGAGGCG
ATGATGAATATGGCAAGGCTCAACAGAACAGGAGGCCTTCTAATCTGTTTACCACGTGAG
CAAGCAGCTCGGTTCTGTGCAGAGATAAAGTCTCCCAAATATGGTGAAGGTCACCAAGCA
TGGATTATTGGGATCGTAGAGAAGGGCAACCGTACAGCCAGAATCATAGACAAACCCCGG
ATCATCGAAGTCGCACCACAGGTGGCCACTCAAAATGTGAATCCCACACCTGGTGCCACC
TCT
//
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	match	62458	36074	680.46	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	62458	62266	0.00	-	0	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	intron	62265	55255	0.00	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	55254	55151	0.00	-	2	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	intron	55150	52919	0.00	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	52918	52811	0.00	-	0	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	intron	52810	51855	0.00	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	51854	51700	0.00	-	0	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	intron	51699	50091	0.00	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	50090	50000	0.00	-	1	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	intron	49999	47747	0.00	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	47746	47647	0.00	-	0	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	intron	47646	36286	0.00	-	.	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
gi|432086308|gb|KB116581.1|:subseq(1201308,100098)	GeneWise	cds	36285	36074	0.00	-	2	gi|432086308|gb|KB116581.1|:subseq(1201308,100098)-genewise-prediction-1
//
