TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PP00000117_2.0 # Protein # Selenoprotein U3 (SelU3) # Human
(Homo sapiens)
         (231 letters)

Database: /cursos/BI/genomes/project_2014/Myotis_davidii/genome.fa 
           101,769 sequences; 2,059,799,708 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|432086619|gb|KB116270.1| Myotis davidii unplaced genomic scaf...    40   0.070
gi|432099999|gb|KB108645.1| Myotis davidii unplaced genomic scaf...    35   2.9  
gi|432106691|gb|KB105404.1| Myotis davidii unplaced genomic scaf...    34   5.0  
gi|432099907|gb|KB108646.1| Myotis davidii unplaced genomic scaf...    33   6.5  
gi|432092841|gb|KB112118.1| Myotis davidii unplaced genomic scaf...    33   8.5  
gi|432100473|gb|KB108371.1| Myotis davidii unplaced genomic scaf...    33   8.5  

>gi|432086619|gb|KB116270.1| Myotis davidii unplaced genomic scaffold
               scaffold128, whole genome shotgun sequence
          Length = 4335580

 Score = 40.0 bits (92), Expect = 0.070
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -1

Query: 49      TGEAVE---LRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEA 105
               TGE  +    + LW +   V   +RR GC +C   A DLSSL   LD+ GV L     E 
Sbjct: 1495711 TGEGTKNFLAKELWEKTGAVTMAVRRPGCFLCGEEAADLSSLKPKLDELGVPLYAAVKEQ 1495532

Query: 106     LGLQ 109
               +G +
Sbjct: 1495531 VGTE 1495520


>gi|432099999|gb|KB108645.1| Myotis davidii unplaced genomic scaffold
               scaffold399, whole genome shotgun sequence
          Length = 7385475

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 18/26 (69%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
 Frame = +3

Query: 2       SRERGSRSEEPGAGNRE--SGSREPG 25
               SRE+G RS  PGAG+RE  SGSR PG
Sbjct: 1211748 SREQGPRSRVPGAGSREQGSGSRVPG 1211825



 Score = 33.1 bits (74), Expect = 8.5
 Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
 Frame = +3

Query: 2       SRERGSRSEEPGAGNRESG--SREPGL--------------------AAAAMSTVDLARV 39
               SRE+GS S  PGAG++E G  SR PG                     A  + ST    + 
Sbjct: 1211790 SREQGSGSRVPGAGSQEQGPRSRVPGAGSRGLAGVAEAAESPLSESDAQCSPSTHSQMQG 1211969

Query: 40      GACILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLD 92
               G C  + +   E + +R+ W   A    G  R  C         L S+  LLD
Sbjct: 1211970 GRCSQRLSSHFECIRVRAAWLVGAAPTPGSPRRPC--------SLRSILRLLD 1212104


>gi|432106691|gb|KB105404.1| Myotis davidii unplaced genomic scaffold
               scaffold134, whole genome shotgun sequence
          Length = 6857920

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
 Frame = +2

Query: 4       ERGSRSEEPGAGNRESGSREPGLAAAAMSTVDLARVGACILKHAVTGEAVELRSL---W- 59
               + G R ++PG     S  R  G A   MST  L          A+ G+A  +R L   W 
Sbjct: 3387545 QEGLRGQKPGGRTAHSTRRGSGGAVVPMSTAVL---------EALRGDAGRVRWL*LRWP 3387697

Query: 60      -REHACVVAGLRRFGCVVCRWIAQDLSSLAG 89
                R    VV  +   GC  C W    LS  AG
Sbjct: 3387698 *RGQGAVVGAVFSSGCPCCLWTVDCLSLEAG 3387790



 Score = 33.1 bits (74), Expect = 8.5
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -1

Query: 3       RERGSRSEEPGAGNRESGSREPGLAAAAMSTV 34
               R  G++  E GAGNR+SG+R+P + +  +S++
Sbjct: 2947798 RRNGAQRAEAGAGNRQSGTRQPQIWSPCLSSL 2947703


>gi|432099907|gb|KB108646.1| Myotis davidii unplaced genomic scaffold
               scaffold93, whole genome shotgun sequence
          Length = 12026314

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -3

Query: 6       GSRSEEPGAGNRESGSREPGLAAAAMSTVDLARVGACILKH 46
               GSRS E  AGN++   REPGL    +  + + ++  C L H
Sbjct: 7830038 GSRSLELIAGNKKHAKREPGLLVLPL*AIGIWQI*QCFLSH 7829916


>gi|432092841|gb|KB112118.1| Myotis davidii unplaced genomic scaffold
               scaffold803, whole genome shotgun sequence
          Length = 5176628

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 41      ACILKHAVTGEAVELRSLWREHACVVAGLRRFGCVVCRWI 80
               +C++  A T  A+ +RS    H C+V  LR  G   CRWI
Sbjct: 2331257 SCLIAMASTSSAMSIRSGENGHPCLVPVLR*NGFSFCRWI 2331138


>gi|432100473|gb|KB108371.1| Myotis davidii unplaced genomic scaffold
              scaffold1320, whole genome shotgun sequence
          Length = 803406

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 8      RSEEPGAGNRESGSREPGLAAAAMSTVDLARVGACILKHAVTGEAVELRSLWR 60
              RS  PG G R       GL  AA S+ +   VGA +L+     ++  L SLWR
Sbjct: 362204 RSAAPGTGWRGVSGASGGLCPAAGSSGEWGPVGAALLRGQGLEQSSRLLSLWR 362046


  Database: /cursos/BI/genomes/project_2014/Myotis_davidii/genome.fa
    Posted date:  Oct 18, 2013  6:13 PM
  Number of letters in database: 2,059,799,708
  Number of sequences in database:  101,769
  
Lambda     K      H
   0.320    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,924,870
Number of Sequences: 101769
Number of extensions: 9697298
Number of successful extensions: 60237
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4644
Number of HSP's successfully gapped in prelim test: 449
Number of HSP's that attempted gapping in prelim test: 7242
Number of HSP's gapped (non-prelim): 56764
length of query: 231
length of database: 686,599,902
effective HSP length: 125
effective length of query: 106
effective length of database: 673,878,777
effective search space: 71431150362
effective search space used: 71431150362
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)
