
genewise output
Score 1064.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000081_2.0    1 MAVYRAALGASLAAAR-LLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGL 
                     MA  +A LG SL AAR  LPL  C P PAP S +S +AMEPAP WLAGL 
                     MASLKAVLGTSLPAARAVLPLFGCRPLPAPCS-ISASAMEPAPHWLAGL 
gi|411115833|gb49931 agtcaggcgatccggcggtcctgtccccgctt atgtgagcgcctcggc 
                     tcctacttgcctcccgcttcttgggctcccgc tcccctacccagtcgt 
                     gcacaggcgggcgccccgggctgccggcgccc cgcccggggccgggag 


SPP00000081_2.0   49 RFDNRALRALPVEAPPPGPEGAPSAP                        
                      FDNRALRALPVE PPP PEGA  AP                        
                     HFDNRALRALPVETPPPDPEGAAPAP          -:L[cta]      
gi|411115833|gb50075 ctgacgccgccggacccgcggggcgcCGNNNNNN  Intron 1      
                     ataagctgctctaccccacagccccc <1-----[50154:51593]   
                     ccccacgcggcggggggccgccgcat                        


SPP00000081_2.0   75      RPVPGACFTRVQPTPLRQPRLVALSEPALALLGLGAP        
                           P     +T    TP   P     S P   L     P        
                          TPTLNLTLTL---TPNTNPNPNPNSNPNPNLNPNPNP        
gi|411115833|gb51591 AAGTAacatacacac   acaaacacacatacacacacacac        
                     -1>  ccctatctct   ccacacacacacacacatacacac        
                          cacacacaca   cactccctctctctctctctctct        


SPP00000081_2.0  112                           AREAEAEAALFFSGNALLPGAEP 
                                               A       ALFFSGNALLPGAEP 
                                P:K[aag]       A-------ALFFSGNALLPGAEP 
gi|411115833|gb51698 AAGTCAAAC  Intron 2   NNNGg       gcttagagcccgggc 
                       <2-----[51700:55528]-2> c       ctttggacttcgcac 
                                               c       cccccccggggccgc 


SPP00000081_2.0  136 AAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS 
                     AAHCYCGHQFGQFAGQLGDGAAMYLGEVCTA GERWELQLKGAGPTPFS 
                     AAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFS 
gi|411115833|gb55578 ggctttgcctgctggccgggggatcgggtaggggctgcccagggcactt 
                     ccagaggaatgatcgatgagcctatgatgcccgaggatatagcgccctc 
                     cgccccccgccgcggggcccccgcgcggcggccgcggggcgccccgccc 


SPP00000081_2.0  185                           QADGRKVLRSSIREFLCSEAMFH 
                                               QADGRKVLRSSIREFLCSEAMFH 
                                R:R[aga]       QADGRKVLRSSIREFLCSEAMFH 
gi|411115833|gb55725 AGGTGGGCG  Intron 3   CAGAcgggcagcctaacgtctaggatc 
                       <2-----[55727:57385]-2> acaggattgcgtgattggactta 
                                               gtcccgcggcccggcgccgcgcc 


SPP00000081_2.0  209 LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI      
                     LGVPTTRAGACVTSESTVVRDVFYDGNPK+E C VVLR+ASTF+      
                     LGVPTTRAGACVTSESTVVRDVFYDGNPKHEPCAVVLRIASTFL      
gi|411115833|gb57456 cggcaacgggtgatgtaggcggttggacacgctgggtcagtatc      
                     tgtcccgcgcgtccaccttgattaagacaaacgctttgtccctt      
                     ggcccggccctcgagcgcgttgccccccgcggcgcggaaccccc      


SPP00000081_2.0  253                           FGSFEIFKSADEHTGRAGPSVGR 
                                               FGSFEIFK+ DEHTGRAGPSVGR 
                                R:R[agg]       FGSFEIFKAEDEHTGRAGPSVGR 
gi|411115833|gb57588 AGGTAACGG  Intron 4   CAGGtgttgataggggcagcggcagga 
                       <2-----[57590:58698]-2> tgctattacaaaacggcgcgtgg 
                                               cgctgctgcgcgcgctgcccgga 


SPP00000081_2.0  277 NDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE             
                     NDIRVQ+LDYV+S+FYPEIQA HASDSVQRNAAFFRE             
                     NDIRVQMLDYVVSTFYPEIQATHASDSVQRNAAFFRE             
gi|411115833|gb58769 agacgcacgtggaattcgacgacgagtgcaaggttcg             
                     aatgtattaattgctacataccacgactagaccttga             
                     cccgagggccgcctccgacgcacctccgggctccccg             


SPP00000081_2.0  314                        VTRRTARMVAEWQCVGFCHGVLNTDN 
                                            VTRRTARMVAEWQCVGFCHGVLNTDN 
                                            VTRRTARMVAEWQCVGFCHGVLNTDN 
gi|411115833|gb58880 GTGGGTC  Intron 5   CAGgaccagcagggtctggttcggcaaga 
                     <0-----[58880:59660]-0>tcggccgttcagagtgtgagttacaa 
                                            gatcgcgggtgggtccccccgccgcc 


SPP00000081_2.0  340 MSILGLTIDYGPFGFLD                          YDPDHV 
                     MSI+GLTIDYGPFGFLD                          YDPDHV 
                     MSIVGLTIDYGPFGFLD           R:R[agg]       YDPDHV 
gi|411115833|gb59739 aaaggcaagtgctgtcgAGGTGGGCA  Intron 6   CAGGtgcgcg 
                     tgttgtctaagctgtta  <2-----[59792:60203]-2> aacaat 
                     gctggcccccgctccgc                          ccccca 


SPP00000081_2.0  364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA 
                     CNASDN GRY++SKQPEVC+WNL+KLAEAL PELPLE GEAILAEE+DA 
                     CNASDNAGRYSFSKQPEVCKWNLQKLAEALVPELPLEQGEAILAEEYDA 
gi|411115833|gb60223 tagtgaggctttaaccggtataccacgggcgcgcccgcgggacgggtgg 
                     gaccaacggactgaacatgagataatcacttcatctaagacttcaaaac 
                     cccgctcgccgccggtggcggcggggcgcggcggctggcgccgcggtcc 


SPP00000081_2.0  413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT            
                     EF+RHYL KMRRKLGLVQ E EED ALV+KLLETMHLT            
                     EFRRHYLHKMRRKLGLVQAEREEDAALVAKLLETMHLT            
gi|411115833|gb60370 gtcactccaacaacgcgcggcgggggcggaccgaacca            
                     atggaataatggatgttacagaaaccttcattactatc            
                     gccaccgcggcgggccggtggggctgggcgcggcgcgc            


SPP00000081_2.0  451                           ADFTNTFYLLSSFPVELESPGLA 
                                               ADFTNTFYLLSSFPV  ESPGLA 
                               G:G[ggt]        ADFTNTFYLLSSFPVGPESPGLA 
gi|411115833|gb60484 GGTGAGTG  Intron 7   CAGGTggtaaattccattcggcgtcgcg 
                      <1-----[60485:64105]-1>  catcactattgctctgcaccgtc 
                                               cccaccccggcccaggcgtgcgc 


SPP00000081_2.0  475 EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFL  LMEQCASLEELRLAFRPQMDP                        
                     EFLTALMEQCASLEELRLAFRPQMDP           R:R[cgg]     
gi|411115833|gb64177 gtcagcagctgtcggcccgtcccagcCGGTGGGTG  Intron 8     
                     attccttaagcctaatgtctgcatac  <2-----[64257:65041]  
                     gcgtgggggtccgggggtccgcggcc                        


SPP00000081_2.0  501     QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 
                         QLSMMLMLAQSNPQLFAL+GTRA + +ELERVEQQSRLEQLS AE 
                         QLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSPAE 
gi|411115833|gb65039 CAGGcctaacacgctaccctgcagacgagaagcgcggcctccgccacgg 
                     -2> atctttttcacacattcttgcgcatcaatagtaaacgtaatgcca 
                         gccgggggggacggctagcccgccccggggtggggggggggcgca 


SPP00000081_2.0  547 LQSRNQGHWADWLQAY                          ARLDKDL 
                     L SRN+GHWADWLQ Y                          ARL+KD  
                     LLSRNRGHWADWLQEY           R:R[agg]       ARLEKDR 
gi|411115833|gb65178 ccaaaagctggtccgtAGGTGAGTC  Intron 9   CAGGgacgaga 
                     ttggaggagcagtaaa  <2-----[65228:65346]-2> cgtaaag 
                     ggcgcgccgtcgcggc                          cggggcg 


SPP00000081_2.0  571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE---- 
                     EGA D  AWQAE  RVMHANNPKYVLRNYIAQNAIEAAE GDFSE     
                     EGAADEDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAENGDFSEARTR 
gi|411115833|gb65369 ggggggggtcggcacgacgaacatgccatagcagaggggaggttggaac 
                     agccaaacgacagcgttacaacaattgaatcaactaccaagatcacgcg 
                     gtctcgtcggtgcgtcgcccccgccggcccggtccgtcgcaccagagac 


SPP00000081_2.0  616 -------                       VRRVLKLLETPYHCEAGAA 
                                                   VRRVLKLLE PYH E  AA 
                     QSLLFPW                       VRRVLKLLEAPYHREGEAA 
gi|411115833|gb65516 ctcctctGTCCCGC  Intron 10  CAGgccgcaccggctcaggggg 
                     actttcg<0-----[65537:65601]-0>tggttattaccaagagacc 
                     gccctcg                       gggggggggcaccggggct 


SPP00000081_2.0  635 TDAEATEADGADG---RQRSYSSKPPLWAAELCVT               
                        EATE +GA     R+RSYSSKPPLWAAELCVT               
                     EVLEATEPEGASSTAERRRSYSSKPPLWAAELCVT               
gi|411115833|gb65659 ggcggagcgggaaaggaccttaaaccctgggctga               
                     attaccacagcggccagggcaggacctgccatgtc               
                     gcggctgtggcccgaggccccccgcgcgcaggtgg               


//
Making a L in phase 1 intron
Making a K in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|411115833|gb|JH977730.1|:subseq(3379992,115772).pep
MASLKAVLGTSLPAARAVLPLFGCRPLPAPCSISASAMEPAPHWLAGLHFDNRALRALPV
ETPPPDPEGAAPAPLTPTLNLTLTLTPNTNPNPNPNSNPNPNLNPNPNPKAALFFSGNAL
LPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTAAGERWELQLKGAGPTPFSRQADG
RKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKHEPCAVVLRIAS
TFLRFGSFEIFKAEDEHTGRAGPSVGRNDIRVQMLDYVVSTFYPEIQATHASDSVQRNAA
FFREVTRRTARMVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGFLDRYDPDHVCNASDN
AGRYSFSKQPEVCKWNLQKLAEALVPELPLEQGEAILAEEYDAEFRRHYLHKMRRKLGLV
QAEREEDAALVAKLLETMHLTGADFTNTFYLLSSFPVGPESPGLAEFLTALMEQCASLEE
LRLAFRPQMDPRQLSMMLMLAQSNPQLFALIGTRANVTKELERVEQQSRLEQLSPAELLS
RNRGHWADWLQEYRARLEKDREGAADEDAWQAERTRVMHANNPKYVLRNYIAQNAIEAAE
NGDFSEARTRQSLLFPWVRRVLKLLEAPYHREGEAAEVLEATEPEGASSTAERRRSYSSK
PPLWAAELCVT
//
>gi|411115833|gb|JH977730.1|:subseq(3379992,115772).[49931:65763].sp
ATGGCCTCACTCAAAGCGGTGCTCGGGACGTCGCTCCCGGCCGCCCGCGCCGTGTTGCCG
CTCTTTGGGTGCCGCCCGCTGCCCGCGCCCTGCTCCATCTCGGCCTCCGCCATGGAGCCG
GCGCCCCACTGGCTGGCGGGACTGCACTTCGACAACCGAGCCCTGCGCGCGCTGCCCGTG
GAGACGCCGCCGCCGGACCCCGAGGGCGCCGCGCCCGCACCTCTAACCCCAACCTTAAAC
CTAACCCTAACCCTAACCCCAAACACTAACCCCAACCCTAACCCTAACTCTAACCCTAAC
CCTAACCTTAACCCTAACCCTAACCCTAAGGCCGCCCTCTTCTTCAGCGGCAACGCGCTG
CTGCCGGGCGCCGAGCCCGCCGCGCACTGCTACTGCGGCCACCAGTTCGGCCAGTTCGCG
GGGCAGCTGGGCGACGGCGCCGCCATGTACCTGGGCGAGGTGTGCACGGCGGCCGGCGAG
CGCTGGGAGCTGCAGCTCAAGGGCGCCGGCCCCACGCCCTTCTCCAGACAGGCTGACGGC
CGCAAGGTCCTGCGGTCCAGCATCCGGGAGTTCCTGTGCAGCGAGGCCATGTTCCACCTG
GGGGTCCCCACCACGCGGGCCGGCGCCTGTGTCACGTCAGAGTCCACGGTCGTGCGTGAT
GTGTTCTACGACGGCAACCCCAAGCACGAGCCGTGCGCGGTCGTGTTGCGAATAGCCTCC
ACCTTCCTCAGGTTCGGGTCCTTTGAGATCTTTAAGGCCGAGGACGAGCACACGGGCCGT
GCGGGCCCCAGCGTGGGGAGAAACGACATCCGGGTACAGATGCTGGACTACGTGGTCAGC
ACTTTCTACCCGGAAATCCAGGCCACACACGCCAGTGACTCCGTGCAGAGGAACGCTGCC
TTCTTCCGCGAGGTGACACGTCGCACGGCCCGGATGGTGGCTGAGTGGCAGTGTGTCGGC
TTCTGCCACGGCGTGCTCAACACGGACAACATGAGCATTGTGGGGCTCACCATCGACTAC
GGGCCCTTTGGCTTCCTGGACAGGTACGACCCCGACCACGTATGCAACGCCTCGGACAAT
GCCGGGCGCTACTCGTTCAGCAAGCAGCCTGAGGTGTGCAAGTGGAACCTGCAGAAGCTG
GCCGAGGCCCTGGTGCCCGAGCTGCCCCTTGAGCAGGGCGAGGCCATCCTGGCCGAGGAG
TATGACGCCGAGTTCCGCAGACACTACCTGCACAAGATGCGCAGGAAGCTGGGCCTCGTG
CAGGCTGAGCGGGAGGAGGACGCTGCGCTGGTGGCCAAGCTCCTGGAGACCATGCACCTG
ACCGGTGCCGACTTCACAAACACCTTCTACCTGCTGAGCTCCTTCCCAGTGGGGCCCGAG
TCTCCGGGCCTGGCCGAGTTCCTGACTGCGCTGATGGAGCAGTGTGCCTCCCTGGAGGAG
CTGCGGCTTGCCTTCCGGCCCCAGATGGACCCCCGGCAGCTCTCCATGATGCTGATGCTG
GCGCAGTCAAACCCGCAGCTCTTTGCACTGATCGGCACCCGGGCCAACGTCACCAAGGAG
CTGGAGCGTGTGGAGCAGCAGTCGCGGCTGGAGCAGCTGAGCCCGGCCGAACTGCTGAGC
AGGAACAGGGGCCACTGGGCTGACTGGCTCCAGGAGTACAGGGCCAGGCTGGAGAAGGAC
AGGGAGGGTGCCGCTGACGAGGATGCCTGGCAGGCTGAGCGCACGCGTGTCATGCACGCC
AACAACCCCAAGTACGTCCTGCGGAACTACATCGCGCAGAATGCCATCGAGGCTGCCGAG
AACGGAGACTTCTCAGAGGCAAGGACACGCCAGTCCCTCCTCTTTCCCTGGGTGCGGCGG
GTGCTGAAGCTGCTGGAGGCCCCATACCACAGGGAGGGGGAGGCCGCTGAGGTCCTGGAG
GCCACTGAGCCTGAGGGGGCCAGCAGCACGGCAGAGAGGCGCCGCTCCTACAGCAGCAAG
CCCCCGCTCTGGGCCGCAGAGCTGTGTGTGACG
//
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	match	49931	65763	1084.33	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	49931	50153	0.00	+	0	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	50154	51593	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	51594	51699	0.00	+	2	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	51700	55528	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	55529	55726	0.00	+	1	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	55727	57385	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	57386	57589	0.00	+	1	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	57590	58698	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	58699	58879	0.00	+	1	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	58880	59660	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	59661	59791	0.00	+	0	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	59792	60203	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	60204	60484	0.00	+	1	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	60485	64105	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	64106	64256	0.00	+	2	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	64257	65041	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	65042	65227	0.00	+	1	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	65228	65346	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	65347	65536	0.00	+	1	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	intron	65537	65601	0.00	+	.	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
gi|411115833|gb|JH977730.1|:subseq(3379992,115772)	GeneWise	cds	65602	65763	0.00	+	0	gi|411115833|gb|JH977730.1|:subseq(3379992,115772)-genewise-prediction-1
//
