
genewise output
Score 595.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000146_2.0    1 MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
                     MAASLWMGD                       LEPYMDENFISRAFATM 
gi|411115908|g-62945 aggactaggGTGAGTG  Intron 1   CAGcgctaggatatagtgaa 
                     tccgtgtga<0-----[62918:62169]-0>tacataaattcgctcct 
                     ggccgggcc                       ggccgtgccccactccg 


SPP00000146_2.0   27 GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT                          IPAGYCFV 
                     GETVMSVKIIRNRLT           G:G[ggg]       IPAGYCFV 
gi|411115908|g-62117 ggagaagaaacaccaGGGTACGTT  Intron 2   CAGGacggtttg 
                     gacttgtattgagtc  <2-----[62070:59705]-2> tccgagtt 
                     ggcggccatcaccct                          tattctta 


SPP00000146_2.0   51 EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
                     EFADLATAEKCLHKINGKPLPGATP                       A 
gi|411115908|g-59679 gtggtgaggattcaaagacccggacGTAAGGA  Intron 3   CAGg 
                     atcatcccaagtaatagactcgccc<0-----[59604:58991]-0>c 
                     atatgcacggtgtattgactaacat                       a 


SPP00000146_2.0   77 KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN                          PEYSLFV 
                     KRFKLNYATYGKQPDN           S:S[agc]       PEYSLFV 
gi|411115908|g-58987 actacatgatgaccgaAGGTAAGTA  Intron 4   CAGCcgttctg 
                     agtataaccagaacaa  <2-----[58937:57450]-2> caacttt 
                     attagcttttgaaatc                          tgccctg 


SPP00000146_2.0  101 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
                     GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS              
gi|411115908|g-57427 ggcacgggggactgttgagtcttcggaggtgcaggt              
                     gatccataagttaatttataccggggatttaacgtc              
                     gcgcatgtccggtacccacccccgacggtgcgacgt              


SPP00000146_2.0  137                           GYGFVKFTDELEQKRALTECQGA 
                                               GYGFVKFTDELEQKRALTECQGA 
                                K:K[aag]       GYGFVKFTDELEQKRALTECQGA 
gi|411115908|g-57319 AAGTAAGGC  Intron 5   CAGGgtgtgataggcgcacgcagtcgg 
                       <2-----[57317:56349]-2> gagttatcaataaagctcagagc 
                                               ctttggcatagaggacgggcgaa 


SPP00000146_2.0  161 VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKPVRLSVAIPK                          SRVKPVE 
                     VGLGSKPVRLSVAIPK           A:A[gct]       SRVKPVE 
gi|411115908|g-56278 ggcgtacgccaggacaGCGTGAGTC  Intron 6   CAGTacgacgg 
                     tgtgcactgtgtctca  <2-----[56228:53847]-2> ggtacta 
                     acgataagggtgacta                          ttggcga 


SPP00000146_2.0  185 YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
                     YSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQ   
gi|411115908|g-53824 tacatatatacttcctcattgctgtgcaagatatatcctgtacaaac   
                     agatagagaaaaaaaaaaaacaggaaaacggagagacaagacagcta   
                     ttggctccccgtcggcgccctggctcgtacccccttcgtctcgccgg   


SPP00000146_2.0  232                        TYEEVGDDALE                
                                            TYEEVGDDALE                
                                            TYEEVGDDALE                
gi|411115908|g-53683 GTAACCA  Intron 7   CAGatgggggggtg                
                     <0-----[53683:53475]-0>caaatgaacta                
                                            ataatatttga                


SPP00000146_2.0  243                           PMPQLDVTEANKEFMEQSEELYD 
                                               PMPQLDVTEANKEFMEQSEELYD 
                               D:D[gac]        PMPQLDVTEANKEFMEQSEELYD 
gi|411115908|g-53441 GGTAAGAA  Intron 8   CAGACcacccggaggaagtagcaggctg 
                      <1-----[53440:50134]-1>  ctcatatcacaaattaagaataa 
                                               cgaggcgcgccggcgggtgggct 


SPP00000146_2.0  267 ALMDCHWQPLDTVSSEIPAMM                             
                     ALMDCHWQPLDTVSSEIPA+M                             
                     ALMDCHWQPLDTVSSEIPAVM                             
gi|411115908|g-50062 gcagtctcccgagttgacgga                             
                     cttagagactactccatcctt                             
                     cggttcggcgcagtagcttgg                             


//
Making a G in phase 2 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a A in phase 2 intron
Making a D in phase 1 intron
>gi|411115908|gb|JH977655.1|:subseq(1831131,112189).pep
MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEK
CLHKINGKPLPGATPAKRFKLNYATYGKQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY
PSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASRV
KPVEYSQMYSYSYNQYYQQYQNYYAQWGYDQNTGSYSYSYPQYGYTQSTMQTYEEVGDDA
LEDPMPQLDVTEANKEFMEQSEELYDALMDCHWQPLDTVSSEIPAVM
//
>gi|411115908|gb|JH977655.1|:subseq(1831131,112189).[62945:49998].sp
ATGGCGGCCAGCCTGTGGATGGGCGACCTGGAGCCCTACATGGATGAGAACTTCATCTCC
AGAGCCTTTGCCACCATGGGGGAGACCGTGATGAGCGTCAAAATTATCCGAAACCGCCTC
ACTGGGATTCCAGCTGGTTACTGTTTTGTAGAATTTGCAGATTTGGCCACAGCCGAGAAG
TGTTTGCATAAAATTAATGGGAAACCCCTTCCAGGAGCCACACCTGCAAAACGTTTTAAA
CTGAACTATGCTACTTATGGGAAACAACCAGATAACAGCCCTGAGTACTCCCTCTTTGTG
GGGGACCTGACCCCAGATGTGGATGACGGCATGCTGTATGAATTCTTCGTCAAAGTCTAC
CCCTCCTGCCGGGGAGGCAAGGTGGTTTTGGACCAGACAGGCGTGTCTAAGGGCTATGGT
TTTGTGAAGTTCACAGATGAACTGGAACAGAAGCGAGCCCTGACGGAGTGCCAGGGAGCA
GTAGGCCTGGGATCTAAACCAGTGCGGCTGAGTGTGGCAATCCCTAAAGCTAGTCGTGTG
AAGCCCGTGGAATATAGTCAGATGTACAGTTACAGCTACAACCAGTATTACCAGCAGTAC
CAGAACTACTACGCTCAGTGGGGCTATGACCAGAATACAGGCAGCTACAGCTACAGTTAT
CCCCAGTATGGCTATACCCAGAGCACCATGCAGACATATGAAGAAGTTGGAGATGATGCT
TTGGAAGACCCCATGCCACAGCTGGACGTGACCGAGGCCAACAAGGAGTTCATGGAGCAG
AGTGAGGAGCTGTACGATGCCCTGATGGATTGTCACTGGCAGCCCCTGGACACAGTGTCT
TCAGAGATCCCTGCTGTGATG
//
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	match	62945	50000	595.07	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	62945	62919	0.00	-	0	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	62918	62169	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	62168	62071	0.00	-	0	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	62070	59705	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	59704	59605	0.00	-	1	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	59604	58991	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	58990	58938	0.00	-	0	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	58937	57450	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	57449	57318	0.00	-	1	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	57317	56349	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	56348	56229	0.00	-	1	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	56228	53847	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	53846	53684	0.00	-	1	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	53683	53475	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	53474	53441	0.00	-	0	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	intron	53440	50134	0.00	-	.	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
gi|411115908|gb|JH977655.1|:subseq(1831131,112189)	GeneWise	cds	50133	50000	0.00	-	2	gi|411115908|gb|JH977655.1|:subseq(1831131,112189)-genewise-prediction-1
//
