
genewise output
Score 271.59 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000052_2.0   73 PSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQ 
                     P +WK LR+ELL  LE FL A++    ++ PP  TEA+W  F  CL+ Q 
                     PPRWKALRRELLTCLEGFLRALLLRGPLAAPPGGTEALWVAFTACLRAQ 
gi|411115821|-201344 ccctagcccgccatcggtccgccccgccggccggaggctggtagtccgc 
                     ccggactggattcgtagttgctttggctccccggcactgtctccgtgca 
                     gccgggccgggcgcgaccgggggcgcgggggcgcggcgggcccccggtg 


SPP00000052_2.0  122 DLIFSA-AFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK 
                      L+  A A E  + +L T  A   PL+LVLDDNFYY+SMR+EVYQLAR+ 
                     GLLRPAPAAEGPARHLPTPPA-EGPLLLVLDDNFYYRSMRHEVYQLARR 
gi|411115821|-201197 gccccgcggggcgccccaccg ggccccgcggatttcaaacggtccgca 
                     gttgcccccagccgatccccc agctttttaaataaggtgaataatcgg 
                     cggtctcccgcgcccgccgcg gctgggcgcccctcgcggcgccgggcg 


SPP00000052_2.0  170                           SLGFCQLFLDCPLETCLQRNGQR 
                                               SLGFCQLFLDCPLETCLQRNG+R 
                               Y:Y[tac]        SLGFCQLFLDCPLETCLQRNGRR 
gi|411115821|-201053 TGTGAGTG  Intron 1   CAGACtcgttcctcgtccgattcaagcc 
                      <1-----[201052:20087-1>  ctgtgatttagctacgtagaggg 
                                               gggccgccgtccggccaggtcgg 


SPP00000052_2.0  194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA        
                     P ALP ETI LM R++E+PNP+KNAWEHNSLT+ S A ++EA        
                     PGALPAETIRLMRRRMEEPNPQKNAWEHNSLTVRSSAGSAEA        
gi|411115821|-200805 cggccggaactacaaaggcaccaagtgcaacagcatggtggg        
                     cgctccactgttgggtaacacaaacgaaagtctggccgccac        
                     cgggccgcccggggggggcccgaccggccccggcccgcgcgc        


SPP00000052_2.0  236                           LEVTDLLLTALENPVKYAEDNME 
                                                E+T LLL ALENPV   ED+ E 
                                S:S[agc]       PELTGLLLAALENPVTCVEDSAE 
gi|411115821|-200679 AGGTAGCCG  Intron 2   CAGCcgcagcccggcgacgatgggagg 
                       <2-----[200677:20053-2> catcgtttcctaactcgtaagca 
                                               cggccggttcgacggccggctga 


SPP00000052_2.0  260 QK                       DTDRIICSTNILHKTDQTLRRIVS 
                     QK                       + DR +CS + LH+ DQ LRRIVS 
                     QK                       EADRAVCSASTLHRADQALRRIVS 
gi|411115821|-200462 caGTGCGTC  Intron 3   CAGgggaggttgaacccggcgccaagt 
                     aa<0-----[200456:20010-0>acagctgccgctagcaactggttc 
                     gg                       aacatgccccggcgtcgggagccc 


SPP00000052_2.0  286 QTMKEAKGNQ                                        
                     QTMKEAKG +                                        
                     QTMKEAKGTR                                        
gi|411115821|-200029 caaaggagac                                        
                     actaacagcg                                        
                     gcggacatgg                                        


//
Making a Y in phase 1 intron
Making a S in phase 2 intron
>gi|411115821|gb|JH977742.1|:subseq(3219639,301365).pep
PPRWKALRRELLTCLEGFLRALLLRGPLAAPPGGTEALWVAFTACLRAQGLLRPAPAAEG
PARHLPTPPAEGPLLLVLDDNFYYRSMRHEVYQLARRYSLGFCQLFLDCPLETCLQRNGR
RPGALPAETIRLMRRRMEEPNPQKNAWEHNSLTVRSSAGSAEASPELTGLLLAALENPVT
CVEDSAEQKEADRAVCSASTLHRADQALRRIVSQTMKEAKGTR
//
>gi|411115821|gb|JH977742.1|:subseq(3219639,301365).[201344:199998].sp
CCGCCCCGCTGGAAGGCGCTCCGCCGGGAGCTGCTCACGTGCCTGGAAGGCTTCCTGCGG
GCGCTGCTGCTCCGGGGCCCGCTGGCGGCGCCGCCCGGGGGCACGGAGGCCCTGTGGGTG
GCCTTCACCGCCTGCCTGCGGGCTCAGGGCCTGCTGCGTCCCGCTCCCGCCGCCGAGGGC
CCGGCCCGCCACCTGCCCACCCCGCCCGCGGAGGGCCCTCTGCTGCTGGTCCTGGACGAC
AACTTCTATTACCGGAGCATGAGGCACGAGGTCTACCAGCTGGCGCGCAGGTACTCGCTG
GGGTTCTGCCAGCTCTTCCTGGATTGCCCCCTGGAGACCTGCTTACAGAGGAATGGCCGG
CGGCCCGGGGCGCTGCCCGCCGAGACCATCCGCTTGATGCGGAGGAGGATGGAGGAGCCC
AACCCCCAGAAAAACGCCTGGGAGCACAACAGCCTCACGGTGCGCAGCTCCGCGGGCTCG
GCCGAGGCCAGCCCCGAGCTGACCGGCCTGCTGCTTGCTGCCCTGGAAAACCCGGTGACC
TGCGTGGAGGACAGTGCGGAACAGAAGGAAGCAGACAGAGCTGTGTGCTCCGCCAGCACG
CTGCACCGGGCTGACCAGGCGCTGCGAAGGATCGTCTCCCAGACCATGAAGGAAGCCAAA
GGTACGCGG
//
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	match	201344	200000	271.59	-	.	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	cds	201344	201053	0.00	-	0	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	intron	201052	200877	0.00	-	.	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	cds	200876	200678	0.00	-	2	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	intron	200677	200533	0.00	-	.	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	cds	200532	200457	0.00	-	1	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	intron	200456	200102	0.00	-	.	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
gi|411115821|gb|JH977742.1|:subseq(3219639,301365)	GeneWise	cds	200101	200000	0.00	-	0	gi|411115821|gb|JH977742.1|:subseq(3219639,301365)-genewise-prediction-1
//
