
genewise output
Score 518.13 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001601_2.0    1 MGLPQPGLWLKRLWILLQVALHVTLGKVQLKLFPRRVKQHILAMNRKNP 
                     MGL QPGLWLKRLWILLQVALHVTLGKVQLKLFP RVKQHILAMNRKNP 
                     MGLLQPGLWLKRLWILLQVALHVTLGKVQLKLFPGRVKQHILAMNRKNP 
gi|411115943|-969414 agccccgctcaactactcggccgatgagccactcgagaccatgaacaac 
                     tgttacgtgtagtgtttatctatctgatatattcggtaaattctagaac 
                     gggtgaggggggcgacgggcgtgcgcaaagagtcgacggtcgcgcggcg 


SPP00001601_2.0   50 HFSYDNWAPTLFSTPYFWFILKVRWQRLEDKTEEGSLAPNCPVVRLSGQ 
                     HFSYDNWAPTLF T YFWF+LKVRWQRLEDKTEEG LAPNCPVVRLSGQ 
                     HFSYDNWAPTLFGTQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVRLSGQ 
gi|411115943|-969267 ctttgatgcactgacttttgcagctcctggaaggggcgcatcggcctgc 
                     atcaaagcccttgcaatgtttatggagtaaacaaggtccagcttgtcga 
                     cccttcgtccccccgtcgccggctgaaggcgtgagtatccctgcctaag 


SPP00001601_2.0   99 RCHIWDFMQ                          NRPLVLNFGSCTXP 
                     RC+IWDF+Q                          NRPLVLNFGSCTXP 
                     RCNIWDFIQ          G:G[ggc]        NRPLVLNFGSCTXP 
gi|411115943|-969120 ataatgtacGGTCAGGA  Intron 1   CAGGCaaccgcatgatatc 
                     ggatgatta <1-----[969092:95805-1>  agctttatgggcgc 
                     gtctgccaa                          cgagggttattcat 


SPP00001601_2.0  123 SFLFKFDQFKRLIEDFSAIADFLVIYIEEAHAS                 
                     SFLFKFDQFKRLIEDFSAIADFLVIYIEEAHAS                 
                     SFLFKFDQFKRLIEDFSAIADFLVIYIEEAHAS                 
gi|411115943|-958005 ttctatgctaacaggtagaggtcgatagggcgt                 
                     ctttataatagttaatgctcattttataacacc                 
                     attcatcacgattactccaattcctctaaataa                 


SPP00001601_2.0  156                           GWAFKNNVVIKNHRNLQDRLQAA 
                                               GWAFKNNVVI+NHRNLQDRLQAA 
                               D:D[gat]        GWAFKNNVVIRNHRNLQDRLQAA 
gi|411115943|-957906 GGTACACA  Intron 2   TAGATgtgtaaaggaaaccaccgcccgg 
                      <1-----[957905:95282-1>  ggctaaatttgaagataagtacc 
                                               cgttgccgccgtcgccgcccgac 


SPP00001601_2.0  180 HLLLDRSPRCPVVVDTMKNQSSQLYAALPDRLYVLQEGRILYK       
                     HLLLDRSPRCPVVVDTMKNQSSQLYAALPDRLYVLQEGRILYK       
                     HLLLDRSPRCPVVVDTMKNQSSQLYAALPDRLYVLQEGRILYK       
gi|411115943|-952757 ccccgaacctcggggaaaacaacctggccgactgccggaacta       
                     atttaggcggctttactaaaggatacctcagtattaaggttaa       
                     cgggcgccgctgggccggcgccgccgagccgccgcggcgcccg       


SPP00001601_2.0  223                        GKPGPWNYHPEEVRAVLEKLRS     
                                            GKPGPWNYHPEEVRAVLEKL S     
                                            GKPGPWNYHPEEVRAVLEKLHS     
gi|411115943|-952628 GTGGTGA  Intron 3   CAGgacgctatccgggcggcgacca     
                     <0-----[952628:95006-0>gacgcgaaacaatgcttaatag     
                                            tgtctgctcagattttgaacct     


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|411115943|gb|JH977620.1|:subseq(53546,1019414).pep
MGLLQPGLWLKRLWILLQVALHVTLGKVQLKLFPGRVKQHILAMNRKNPHFSYDNWAPTL
FGTQYFWFVLKVRWQRLEDKTEEGGLAPNCPVVRLSGQRCNIWDFIQGNRPLVLNFGSCT
XPSFLFKFDQFKRLIEDFSAIADFLVIYIEEAHASDGWAFKNNVVIRNHRNLQDRLQAAH
LLLDRSPRCPVVVDTMKNQSSQLYAALPDRLYVLQEGRILYKGKPGPWNYHPEEVRAVLE
KLHS
//
>gi|411115943|gb|JH977620.1|:subseq(53546,1019414).[969414:949998].sp
ATGGGGCTGCTTCAGCCAGGGCTGTGGCTGAAGAGGCTCTGGATACTCTTGCAGGTGGCC
CTGCATGTGACCTTGGGCAAAGTACAACTGAAACTGTTTCCCGGGAGAGTCAAGCAGCAT
ATCTTGGCCATGAACCGGAAGAACCCGCACTTCTCCTATGATAACTGGGCTCCCACCCTC
TTCGGCACCCAGTATTTCTGGTTCGTCCTGAAGGTCCGTTGGCAACGATTGGAGGACAAG
ACTGAGGAAGGGGGTCTAGCTCCCAACTGCCCTGTGGTCCGCCTTTCAGGACAGAGGTGT
AACATTTGGGACTTCATACAAGGCAACAGGCCACTGGTGCTGAATTTTGGAAGTTGTACC
TGACCTTCATTTCTTTTCAAATTTGACCAATTCAAGAGACTTATTGAAGACTTTAGCGCC
ATAGCAGATTTTCTCGTCATTTACATTGAAGAAGCACATGCATCAGATGGCTGGGCTTTT
AAGAACAACGTGGTCATCAGGAATCACCGGAACCTCCAGGACCGCCTCCAGGCAGCCCAC
CTGCTGCTGGACAGGAGCCCCCGGTGCCCTGTGGTGGTGGACACCATGAAGAACCAGAGC
AGCCAGCTCTACGCGGCACTGCCCGACAGGCTCTACGTGCTCCAGGAGGGCAGGATCCTC
TACAAGGGTAAGCCTGGCCCTTGGAACTATCACCCAGAGGAAGTTCGTGCTGTTCTGGAA
AAACTCCACAGT
//
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	match	969414	950000	518.13	-	.	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	cds	969414	969093	0.00	-	0	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	intron	969092	958050	0.00	-	.	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	cds	958049	957906	0.00	-	2	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	intron	957905	952829	0.00	-	.	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	cds	952828	952629	0.00	-	2	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	intron	952628	950066	0.00	-	.	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(53546,1019414)	GeneWise	cds	950065	950000	0.00	-	0	gi|411115943|gb|JH977620.1|:subseq(53546,1019414)-genewise-prediction-1
//
