genewise output
Score 266.52 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000094_2.0    1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQS                  
                     MSPRRTLPRPLSLC  LC+CL  AAA G+AQ                   
                     MSPRRTLPRPLSLC--LCVCLAAAAARGAAQP                  
gi|411115904|gb29989 aacccaccccctct  ctgtcgggggcgggcc                  
                     tgcggctcgctctg  tgtgtcccccggccac                  
                     gcgggccgcccgcc  ccctgcgtggaacggc                  


SPP00000094_2.0   33                           SCRDKKNCKVVFSQQELRKRLTP 
                                               SCRD KNCKVVFSQQELRKRLTP 
                               G:G[ggg]        SCRDTKNCKVVFSQQELRKRLTP 
gi|411115904|gb30079 GGTAAGTT  Intron 1   CAGGGttagaaataggttccgcaaccac 
                      <1-----[30080:99991]-1>  cggacaagatttcaaatgagtcc 
                                               atgtagctggctcggagggggac 


SPP00000094_2.0   57 LQYHVTQEKGTE                          AFEGEYTHHKD 
                     LQYHVTQEKGTE                          AFEGEY HHKD 
                     LQYHVTQEKGTE           S:S[agt]       AFEGEYNHHKD 
gi|411115904|g100063 cctcgacgagagAGGTAAGGT  Intron 2   CAGTgtgggtaccag 
                     taaatcaaagca  <2-----[100101:10172-2> ctagaaaaaaa 
                     ggttccggagca                          ccaaatttcat 


SPP00000094_2.0   81 PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF           K:K[aag]       SETKFDSGS 
gi|411115904|g101758 cgatatggtgacttAAGTAAGTA  Intron 3   CAGGtgaatgtgt 
                     cgtaagttggcctt  <2-----[101802:14118-2> cacatacgc 
                     taatattctatagc                          aacatctta 


SPP00000094_2.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVI+S+AIT+TDDFSYGM 
                               G:G[ggt]        WPSFHDVISSDAITLTDDFSYGM 
gi|411115904|g141210 GGTATGTT  Intron 4   CAGGTtcttcggaatggaacaggtttga 
                      <1-----[141211:20804-1>  gcctaattgcactctcaatcagt 
                                               gtacccgcttcacactcctccgg 


SPP00000094_2.0  129 HRVETSCSQVSS                                      
                     HRVETSCSQVSS                                      
                     HRVETSCSQVSS                                      
gi|411115904|g208121 caggaattcgat                                      
                     agtacggcatgc                                      
                     cgggtcctgctc                                      


//
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>gi|411115904|gb|JH977659.1|:subseq(7828581,308156).pep
MSPRRTLPRPLSLCLCVCLAAAAARGAAQPGSCRDTKNCKVVFSQQELRKRLTPLQYHVT
QEKGTESAFEGEYNHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVISSDAITLTD
DFSYGMHRVETSCSQVSS
//
>gi|411115904|gb|JH977659.1|:subseq(7828581,308156).[29989:208156].sp
ATGAGCCCGCGGCGGACCCTCCCGCGCCCCCTCTCGCTCTGCCTCTGCGTCTGTCTGGCC
GCGGCTGCGGCGCGAGGAGCCGCGCAGCCCGGGTCATGTAGGGATACAAAGAACTGTAAG
GTGGTCTTTTCCCAGCAGGAACTGAGGAAGCGGCTGACACCCCTGCAGTATCATGTCACC
CAGGAGAAAGGGACCGAAAGTGCCTTCGAAGGAGAATATAATCATCACAAAGATCCTGGA
ATATATAAATGTGTTGTCTGTGGAACTCCATTGTTCAAGTCAGAAACCAAATTTGACTCT
GGTTCAGGTTGGCCTTCATTCCACGACGTGATCAGTTCTGACGCAATCACACTCACTGAC
GACTTTTCCTACGGGATGCACAGGGTGGAGACTAGCTGCTCTCAGGTCAGTTCC
//
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	match	29989	208156	267.52	+	.	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	cds	29989	30079	0.00	+	0	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	intron	30080	99991	0.00	+	.	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	cds	99992	100100	0.00	+	2	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	intron	100101	101723	0.00	+	.	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	cds	101724	101801	0.00	+	1	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	intron	101802	141181	0.00	+	.	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	cds	141182	141210	0.00	+	1	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	intron	141211	208049	0.00	+	.	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
gi|411115904|gb|JH977659.1|:subseq(7828581,308156)	GeneWise	cds	208050	208156	0.00	+	2	gi|411115904|gb|JH977659.1|:subseq(7828581,308156)-genewise-prediction-1
//