genewise output
Score 257.79 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000091_2.0   40 GSLATCELPLAKSEWQKKLTPEQFYVTREKGTEP                
                     GSL      L KSEW+KKLTPEQFYVTREKGTEP                
                     GSLTKHGPSLTKSEWRKKLTPEQFYVTREKGTEP                
gi|411115903|gb99973 gtcaacgctcaaagtcaacacgcttgaagagagc                
                     gctcaagcctcagaggaatccaatatcgaagcac                
                     gttagtgatccgtggagggtcggctccaaaatag                


SPP00000091_2.0   74                        PFSGIYLNNKEAGMYHCVCCDSPLF  
                                            PFSG YLNNK +GMYHCVCCDSPLF  
                                            PFSGTYLNNKASGMYHCVCCDSPLF  
gi|411115903|g100075 GTAAGCT  Intron 1   CAGctagatcaaagtgatctgttgacct  
                     <0-----[100075:10489-0>ctggcataaaccgtaagtggagctt  
                                            tctgccgtcgagagtctgctccacc  


SPP00000091_2.0   99                           SEKKYCSGTGWPSFSEAHGTSGS 
                                               SEKKYCSGTGWPSFSEAHGTSGS 
                                S:S[agt]       SEKKYCSGTGWPSFSEAHGTSGS 
gi|411115903|g104974 AGGTGAGAT  Intron 2   TAGTtgaatttgagtctttggcgatgt 
                       <2-----[104976:11010-2> caaaagcgcggcctcacagccgc 
                                               tgagcccctagtgttgcctgtct 


SPP00000091_2.0  123 DESHTGILRRLDTSLGSARTEVVCKQ                        
                     DES+ GILR +DTSLG ARTEVVCKQ                        
                     DESNAGILRHVDTSLGVARTEVVCKQ                        
gi|411115903|g110176 ggaaggacacggatcgggcagggtacGTGAGTT  Intron 3   CAG 
                     aagacgttgatacctgtcgcattgaa<0-----[110254:11113-0> 
                     taccaacggcgccagaatcagtccgg                        


SPP00000091_2.0  149 CEAHLGHVFPDGPGPNGQRFCINSVALKFKP                   
                     CEAHLGHVFPDGPGP GQRFCINSVALKFKP                   
                     CEAHLGHVFPDGPGPAGQRFCINSVALKFKP                   
gi|411115903|g111140 tggccgcgtcggcgcggcattaaaggcatac                   
                     gacatgattcagcgccgagtgtagtctatac                   
                     tatccctgtttatgtttggtccctgcggcaa                   


//
Making a S in phase 2 intron
>gi|411115903|gb|JH977660.1|:subseq(8372016,211232).pep
GSLTKHGPSLTKSEWRKKLTPEQFYVTREKGTEPPFSGTYLNNKASGMYHCVCCDSPLFS
SEKKYCSGTGWPSFSEAHGTSGSDESNAGILRHVDTSLGVARTEVVCKQCEAHLGHVFPD
GPGPAGQRFCINSVALKFKP
//
>gi|411115903|gb|JH977660.1|:subseq(8372016,211232).[99973:111232].sp
GGGTCTCTTACAAAGCATGGGCCATCTCTCACCAAGAGTGAGTGGCGAAAGAAGCTGACT
CCCGAGCAGTTCTATGTCACCAGAGAAAAAGGAACTGAACCGCCTTTCAGTGGGACCTAC
CTGAATAACAAGGCATCGGGAATGTATCACTGTGTGTGCTGTGACAGCCCACTCTTCAGT
TCTGAGAAAAAGTACTGCTCCGGCACTGGATGGCCTTCGTTTTCTGAGGCCCACGGTACG
TCTGGCTCTGATGAAAGCAACGCAGGAATCCTGAGGCACGTGGACACCTCACTGGGAGTA
GCTCGCACAGAGGTTGTCTGCAAGCAGTGTGAAGCTCACCTCGGCCATGTGTTTCCTGAT
GGACCTGGGCCTGCTGGTCAGAGGTTTTGCATCAACAGTGTGGCCCTGAAGTTCAAACCA
//
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	match	99973	111232	257.79	+	.	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	cds	99973	100074	0.00	+	0	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	intron	100075	104898	0.00	+	.	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	cds	104899	104975	0.00	+	0	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	intron	104976	110105	0.00	+	.	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	cds	110106	110253	0.00	+	1	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	intron	110254	111139	0.00	+	.	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
gi|411115903|gb|JH977660.1|:subseq(8372016,211232)	GeneWise	cds	111140	111232	0.00	+	0	gi|411115903|gb|JH977660.1|:subseq(8372016,211232)-genewise-prediction-1
//