genewise output
Score 206.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000087_2.0    1 MSFCSFFGGEVFQNHFEP                          VYVCA 
                     MSFCSF GGEVFQ HF+P                          VYVCA 
                     MSFCSFSGGEVFQKHFDP          G:G[ggt]        VYVCA 
gi|411115915|-102559 atttattggggtcactgcGGTACAAC  Intron 1   CAGGTgtgtg 
                     tctggtcggattaaatac <1-----[102504:10061-1>  tatgc 
                     ggcccctgcgtcggcttg                          ccgcc 


SPP00000087_2.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK      
                     KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNR EALK      
                     KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALK      
gi|411115915|-100593 atgtgcttactatgcttctcgtagaacggaggaccgcaccggta      
                     aggaattcggcaacacccgcctcactacagtcagcaaagcacta      
                     gtccgcccccagtgcacagaccggtcttctgcgcagccgtacag      


SPP00000087_2.0   69                        VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCGKCGNGLGHEFLNDGPK GQSRF 
                                            VSCGKCGNGLGHEFLNDGPKKGQSRF 
gi|411115915|-100461 GTGAGTG  Intron 2   CAGgttgatgagtgcgtcaggcaagctct 
                     <0-----[100461:10012-0>tcggaggagtgaattaagcaagacgt 
                                            cctcgtccagctgcgctccggggacc 


SPP00000087_2.0   95 XIFSSSLKFVPK                          KETSASQG    
                     XIFSSSLKFVP                           KETSASQG    
                     XIFSSSLKFVPN          G:D[gac]        KETSASQG    
gi|411115915|-100041 tataatcatgcaGGTGAGTT  Intron 3   CAGACagatgtcg    
                     gttggctattca <1-----[100004:99106-1>  aaccccag    
                     aacccaggtctc                          aattccgg    


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|411115915|gb|JH977648.1|:subseq(575815,200614).pep
MSFCSFSGGEVFQKHFDPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPE
HNRPEALKVSCGKCGNGLGHEFLNDGPKKGQSRFXIFSSSLKFVPNDKETSASQG
//
>gi|411115915|gb|JH977648.1|:subseq(575815,200614).[102559:99078].sp
ATGTCGTTCTGCAGCTTCTCTGGGGGCGAGGTTTTCCAGAAGCACTTTGATCCGGGTGTC
TACGTGTGCGCCAAGTGTGGCTACGAGCTCTTCTCCAGCCGCTCAAAGTATGCGCACTCA
TCCCCATGGCCAGCCTTCACGGAGACTATCCATGCTGACAGTGTGGCCAAGCGCCCAGAG
CACAACCGGCCTGAAGCCTTAAAGGTCTCCTGTGGCAAGTGTGGCAACGGATTGGGCCAT
GAGTTCCTGAACGATGGCCCCAAGAAGGGGCAGTCACGCTTCTGAATATTCAGCAGCTCA
CTGAAGTTTGTCCCTAACGACAAAGAAACTTCTGCCTCCCAGGGG
//
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	match	102559	99080	206.32	-	.	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	cds	102559	102505	0.00	-	0	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	intron	102504	100611	0.00	-	.	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	cds	100610	100462	0.00	-	2	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	intron	100461	100120	0.00	-	.	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	cds	100119	100005	0.00	-	0	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	intron	100004	99106	0.00	-	.	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
gi|411115915|gb|JH977648.1|:subseq(575815,200614)	GeneWise	cds	99105	99080	0.00	-	2	gi|411115915|gb|JH977648.1|:subseq(575815,200614)-genewise-prediction-1
//