
genewise output
Score 454.20 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001629_2.0    1 MWRSLGIALALCLLPWGGTESQGQSPFCKPPPAW-ITLVYVFIRYPHST 
                     MWRSLG+ALALCLLPWGGTESQGQSPFCKPPPAW I     ++    S  
                     MWRSLGFALALCLLPWGGTESQGQSPFCKPPPAWSIGEQDPMLSASGSV 
gi|411115829|g-53599 ataacgtgcgctccctggagacgcacttacccgtaaggcgcacagtgtg 
                     tgggtgtctctgttcgggcagagagctgaccccggtgaaacttgccgct 
                     ggacggccgtctcccgacggcggaccctgatgcgcaggaccggcccccg 


SPP00001629_2.0   49 A--SLLKKTYYFCLRQAS                          LEDLR 
                     A   LL+ +  FCLRQA+                          LEDLR 
                     ALVALLQASXSFCLRQAA           S:S[agt]       LEDLR 
gi|411115829|g-53452 gcggcccgattttcacggAGGTAAGAT  Intron 1   TAGTtggcc 
                     cttcttacggctgtgacc  <2-----[53396:52594]-2> taatg 
                     cgtctgaccaccccggct                          gacga 


SPP00001629_2.0   71 VKLEKEGFSNISYVVVNHQGHPSRLRYNLLKNKVSEHIPVYQQEENQTD 
                     VKLEKEGFSNISYV+VNHQG  SRL+YN LKN+VSEHIPVYQQEENQTD 
                     VKLEKEGFSNISYVIVNHQGLFSRLKYNHLKNEVSEHIPVYQQEENQTD 
gi|411115829|g-52577 gacgaggttaattgagaccgcttctataccaaggtgcacgtccggacag 
                     tataaagtcatcatttaaagttcgtaaaataaatcaatctaaaaaaaca 
                     agggaatttcccttttttagcttaaattttatgtagtttttaaaacaat 


SPP00001629_2.0  120 VWTLLNGNKDDFLIYD                          CGRLVYH 
                     VWTLLNGNKDDFLIYD                          CGRLVYH 
                     VWTLLNGNKDDFLIYD           R:R[agg]       CGRLVYH 
gi|411115829|g-52430 gtactagaaggtcatgAGGTATGTA  Intron 2   CAGGtgccgtc 
                     tgcttagaaaatttaa  <2-----[52380:51142]-2> gggttaa 
                     agtcatataccccatc                          tcctgtc 


SPP00001629_2.0  144 LGLPFSILEFPYVEQAIKIAYCEEKCGNCSLT                  
                     LGLPFS+LEFPYVEQAIKIAYCEEKCGNCSLT                  
                     LGLPFSMLEFPYVEQAIKIAYCEEKCGNCSLT                  
gi|411115829|g-51119 cgccttacgtctggcgaaagttggatgattca                  
                     tgtctcttatcataactatcagaaaggagctc                  
                     tcgtccgagcgcgggctgttctagatacctcg                  


SPP00001629_2.0  176                        TLEDEDFCKNMSLATVRKTTEASEPH 
                                            TLEDEDFCKN+SLA VRKTTEA EPH 
                                            TLEDEDFCKNVSLAPVRKTTEAPEPH 
gi|411115829|g-51023 GTATGTC  Intron 3   CAGacggggttaagttgcgaaaaggcgcc 
                     <0-----[51023:50641]-0>ctaaaatgaatctcctgaccaccaca 
                                            agatacctgtgtgttgaacggtggac 


SPP00001629_2.0  202                           HHHHHHHHHEHGHQHIPIAPLPE 
                                               HHHHHH HH+HGHQHIPIA L E 
                               -:H[cac]        HHHHHHRHHKHGHQHIPIAQLSE 
gi|411115829|g-50562 CACCATCA  Intron 4   CAGACcccccccccacgcccacagcctg 
                      <1-----[50561:50476]-1>  aaaaaagaaaagaaatctcatca 
                                               ctctttctcgtgtactcccgccg 


SPP00001629_2.0  225 DQQPAAPNASERVPFPGLHHHLKLESPQTQGHPVRXDEPGSESLPLSSP 
                     +QQPAAPNASE  P+PGLHHH KL+ PQ QGHP  XDEPGSESLPLSSP 
                     NQQPAAPNASEHDPLPGLHHHRKLKGPQRQGHPEHXDEPGSESLPLSSP 
gi|411115829|g-50404 acccggcagtgcgcccgcccccacagccacgccgctggcgagatccttc 
                     aaaccccaccaaactcgtaaagatagcagagacaagaacggagtctccc 
                     cggagaacatgtcttattcccggcgccaagtccgcacgaatataactta 


SPP00001629_2.0  274 QKKLXGKRCLNQLLXKLPRESESAASSXCXHCRHLVFEHTGSAITXRCR 
                     QKKLXGKRC+NQLLXKLPRESESAASS   HCRHL FE TGSAITX+CR 
                     QKKLXGKRCINQLLXKLPRESESAASS!A!HCRHLAFERTGSAITXQCR 
gi|411115829|g-50257 caactgaataactctatcagtgtggaa4g2ctcccgtgcagtgaatcta 
                     aaatggaggtaattgatcgacacccgg c aggatctagcgcctcgagg 
                     ggacaaggtacgacaggcagagactcc t ctctgatgcagcaccagta 


SPP00001629_2.0  323 EALPSLCSXLGLWA-EENVIES                            
                     EALPSLCSXLGLWA EENVIES                            
                     EALPSLCSXLGLWAQEENVIES                            
gi|411115829|g-50110 ggcctttattgctgcggagagt                            
                     actcctgggtgtgcaaaattac                            
                     accctaccaggtgcgggtctgt                            


//
Making a S in phase 2 intron
Making a R in phase 2 intron
Making a H in phase 1 intron
>gi|411115829|gb|JH977734.1|:subseq(3616945,88788).pep
MWRSLGFALALCLLPWGGTESQGQSPFCKPPPAWSIGEQDPMLSASGSVALVALLQASXS
FCLRQAASLEDLRVKLEKEGFSNISYVIVNHQGLFSRLKYNHLKNEVSEHIPVYQQEENQ
TDVWTLLNGNKDDFLIYDRCGRLVYHLGLPFSMLEFPYVEQAIKIAYCEEKCGNCSLTTL
EDEDFCKNVSLAPVRKTTEAPEPHHHHHHHHRHHKHGHQHIPIAQLSENQQPAAPNASEH
DPLPGLHHHRKLKGPQRQGHPEHXDEPGSESLPLSSPQKKLXGKRCINQLLXKLPRESES
AASSXAXHCRHLAFERTGSAITXQCREALPSLCSXLGLWAQEENVIES
//
>gi|411115829|gb|JH977734.1|:subseq(3616945,88788).[53599:50175].sp
ATGTGGAGAAGCCTGGGGTTCGCCCTGGCTCTCTGTCTCCTCCCCTGGGGAGGCACGGAG
AGCCAGGGGCAAAGCCCCTTCTGTAAGCCACCTCCGGCCTGGAGCATAGGGGAGCAAGAC
CCCATGCTGAGCGCCTCCGGCTCCGTGGCCCTGGTTGCCCTTCTGCAAGCCAGCTGATCC
TTCTGCCTCAGGCAGGCCGCTAGTTTGGAAGACCTGCGAGTAAAGCTGGAGAAAGAAGGT
TTTTCTAACATCTCCTATGTTATTGTTAATCATCAAGGGCTCTTTTCTCGATTAAAATAT
AATCATCTTAAAAATGAGGTTTCAGAGCATATTCCTGTTTATCAACAAGAAGAAAACCAA
ACAGATGTATGGACTCTCTTAAATGGAAATAAAGACGACTTCCTCATATATGACAGGTGT
GGCCGCCTTGTGTATCACCTTGGCCTGCCTTTCTCCATGCTAGAGTTCCCGTACGTGGAG
CAGGCCATTAAGATTGCTTACTGTGAAGAGAAATGTGGAAACTGCTCTCTCACGACACTG
GAAGATGAAGACTTCTGTAAGAATGTGTCTTTGGCTCCTGTGAGAAAAACCACGGAGGCT
CCGGAGCCACACCACCACCATCACCATCATCATCGCCATCACAAGCATGGGCATCAACAC
ATTCCCATCGCCCAGCTCTCCGAGAACCAGCAGCCAGCGGCACCAAACGCATCTGAGCAT
GACCCTCTTCCAGGTCTTCACCACCACCGGAAGCTCAAGGGCCCCCAAAGACAGGGTCAC
CCCGAGCACTGAGACGAGCCAGGAAGTGAAAGTTTACCACTCTCTTCTCCACAGAAGAAA
CTCTGAGGAAAGAGGTGTATAAACCAGTTACTCTGAAAGTTGCCCAGAGAGTCAGAGTCA
GCCGCTAGCAGC
>gi|411115829|gb|JH977734.1|:subseq(3616945,88788).[50172:50168].sp
GCT
>gi|411115829|gb|JH977734.1|:subseq(3616945,88788).[50167:50043].sp
CACTGTCGCCATCTGGCATTTGAGCGCACAGGGTCCGCAATCACCTGACAGTGTAGAGAA
GCCCTCCCCTCTTTATGCAGCTGATTGGGGCTTTGGGCCCAGGAGGAGAATGTCATTGAG
TCT
//
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	match	53599	50177	431.21	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	53599	53397	0.00	-	0	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	intron	53396	52594	0.00	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	52593	52381	0.00	-	1	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	intron	52380	51142	0.00	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	51141	51024	0.00	-	1	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	intron	51023	50641	0.00	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	50640	50562	0.00	-	0	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	intron	50561	50476	0.00	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	50475	50177	0.00	-	2	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-1
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	match	50172	50170	-17.05	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-2
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	50172	50170	0.00	-	0	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-2
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	match	50167	50045	41.05	-	.	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-3
gi|411115829|gb|JH977734.1|:subseq(3616945,88788)	GeneWise	cds	50167	50045	0.00	-	0	gi|411115829|gb|JH977734.1|:subseq(3616945,88788)-genewise-prediction-3
//
