genewise output
Score 153.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000077_2.0    1 MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE       
                     M L LPP  +LLLLAAL A   A T +RPDWNRL GL RARVE       
                     MRLPLPPPPVLLLLAALTA---ATTTFRPDWNRLHGLARARVE       
gi|411115935|gb97642 accccccccgccccggcag   gaaatccgtacccgcgcgcgg       
                     tgtctcccctttttcctcc   cccctgcagagtagtcgcgta       
                     gccggtggcgggtggacgc   tccccgccgctgccgcacggg       


SPP00000077_2.0   44                        TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
gi|411115935|gb97762 GTGAGTG  Intron 1   CAGatggtccaccag               
                     <0-----[97762:98982]-0>cggggatagtaa               
                                            cttaaggtcggg               


SPP00000077_2.0   56                        VKAFVTQDIPF                
                                            VKAFVTQDIP+                
                                            VKAFVTQDIPL                
gi|411115935|gb99019 GTGAGTT  Intron 2   CAGgagtgacgacc                
                     <0-----[99019:99194]-0>tacttcaatct                
                                            ggccccgccac                


SPP00000077_2.0   67                           HNLVMKHLPGADPELVLLGRRYE 
                                               HNLVMKHLPGADPELVLLG R+E 
                                Y:Y[tac]       HNLVMKHLPGADPELVLLGHRHE 
gi|411115935|gb99228 TAGTATCCT  Intron 3   CAGCcacgaacccgggcgcgccgcccg 
                       <2-----[99230:99998]-2> aatttaatcgcacattttgagaa 
                                               ccgggacgtgccagcgggccctg 


SPP00000077_2.0   91 ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLS+MTREEINALVQELGFYR 
                     ELE                       RIPLSDMTREEINALVQELGFYR 
gi|411115935|g100069 gcgGTGAGGC  Intron 4   CAGcaccagaacggaagcgcgcgttc 
                     ata<0-----[100078:10016-0>gtctgatcgaatacttaatgtag 
                     ggg                       ccagccgccggccgggggccccc 


SPP00000077_2.0  117 KAAPDAQVPPEYVWAPAKPPEETSD                         
                     KA+PD  VPPE++ APA+  E   D                         
                     KASPDEPVPPEHLRAPARTAEGAPD                         
gi|411115935|g100235 agtcggcgccgcccgcgaaggggcg                         
                     acccaactccaatgcccgccagcca                         
                     gggccgtgctgcgggggaccactgc                         


//
Making a Y in phase 2 intron
>gi|411115935|gb|JH977628.1|:subseq(444117,200309).pep
MRLPLPPPPVLLLLAALTAATTTFRPDWNRLHGLARARVETCGGXQLNRLKEVKAFVTQD
IPLYHNLVMKHLPGADPELVLLGHRHEELERIPLSDMTREEINALVQELGFYRKASPDEP
VPPEHLRAPARTAEGAPD
//
>gi|411115935|gb|JH977628.1|:subseq(444117,200309).[97642:100309].sp
ATGCGCCTCCCGCTGCCTCCGCCGCCCGTGCTGCTGCTTCTGGCGGCACTCACGGCCGCT
ACCACCACCTTCCGGCCCGACTGGAACCGTCTGCACGGCCTGGCCCGAGCCCGGGTGGAG
ACCTGTGGTGGATGACAGCTGAATCGCCTGAAGGAGGTGAAGGCCTTCGTCACCCAGGAC
ATCCCACTCTACCACAACCTGGTGATGAAACACCTGCCTGGGGCCGACCCAGAGCTCGTG
CTGCTGGGCCACCGCCATGAGGAGCTGGAGCGCATCCCACTGAGCGACATGACCCGCGAG
GAGATCAACGCGCTGGTGCAGGAGCTCGGCTTCTACCGCAAGGCGTCGCCCGACGAGCCT
GTGCCCCCTGAGCACCTGCGGGCGCCGGCGAGAACCGCCGAAGGCGCTCCGGAC
//
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	match	97642	100309	155.73	+	.	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	cds	97642	97761	0.00	+	0	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	intron	97762	98982	0.00	+	.	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	cds	98983	99018	0.00	+	0	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	intron	99019	99194	0.00	+	.	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	cds	99195	99229	0.00	+	0	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	intron	99230	99998	0.00	+	.	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	cds	99999	100077	0.00	+	1	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	intron	100078	100165	0.00	+	.	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
gi|411115935|gb|JH977628.1|:subseq(444117,200309)	GeneWise	cds	100166	100309	0.00	+	0	gi|411115935|gb|JH977628.1|:subseq(444117,200309)-genewise-prediction-1
//