genewise output
Score 186.17 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000114_2.0   65 HFLCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCKLTGY 
                     HFLCY CKEYVEDLAKIP+SFLQ   V+ + +  S     +P   +T   
                     HFLCYTCKEYVEDLAKIPKSFLQ---VSFLSVNSSVPASGDPV-QVT-- 
gi|411115849|gb44375 ctcttatagtgggcgaacaattc   gatcagaaagcgtggcg cga   
                     attgacgaaataatcatcagtta   tgttgtaggtcccgact atc   
                     tcgtcccggcgatacaccgtcaa   atcgcgcccgtcagctg acc   


SPP00000114_2.0  114 SHEIYVDPEREIYKRLGMKRGE                          I 
                                IYK+     G                           + 
                     ----------HIYKQCS---GG           E:R[cgg]       L 
gi|411115849|gb44504           catacta   ggCGGTGAGGA  Intron 1   CAGGc 
                               ataaagg   gg  <2-----[44533:49440]-2> t 
                               cccggct   gt                          g 


SPP00000114_2.0  138 ASSG                          QSPHIKSNLLSGSLQSLWR 
                      SS                            SPHIKSN+LSGS+ SLWR 
                     GSSA          -:G[gga]        PSPHIKSNILSGSIWSLWR 
gi|411115849|gb49445 gatgGGTGAGAG  Intron 2   CAGGAcaccaataactgaatactc 
                     ggcc <1-----[49458:50003]-1>  cgcatacattcggtggtgg 
                     tcat                          gcctagacacaactgcggg 


SPP00000114_2.0  161 AVTGPLFDFQGDPAQQGGTLILGP                          
                     AVTGPLFDFQGDP QQGGTL+LGP                          
                     AVTGPLFDFQGDPVQQGGTLVLGP          G:G[ggt]        
gi|411115849|gb50063 ggagcctgtcggcgccggacgtgcGGTAAGCA  Intron 3        
                     ctcgcttatagactaaggctttgc <1-----[50136:52837]     
                     agccgttttaatatgatgcctata                          


SPP00000114_2.0  185      NNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV    
                          + IHFIHRDRNRLDHKPINSVLQLVGVQ V+FT RPSVIHV    
                          HYIHFIHRDRNRLDHKPINSVLQLVGVQQVDFTGRPSVIHV    
gi|411115849|gb52835 TAGGTctactaccgaaatgcacaatgtccgggccggtagactgacg    
                     -1>  aatattagagagtaaactacttattgtaatatcggccttat    
                          cccttactcgtagtcacccttagtgacgggccacatatctg    


//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
>gi|411115849|gb|JH977714.1|:subseq(3384670,102962).pep
HFLCYTCKEYVEDLAKIPKSFLQVSFLSVNSSVPASGDPVQVTHIYKQCSGGRLGSSAGP
SPHIKSNILSGSIWSLWRAVTGPLFDFQGDPVQQGGTLVLGPGHYIHFIHRDRNRLDHKP
INSVLQLVGVQQVDFTGRPSVIHV
//
>gi|411115849|gb|JH977714.1|:subseq(3384670,102962).[44375:52962].sp
CATTTCCTGTGTTACACCTGCAAGGAGTACGTGGAAGATCTAGCCAAAATCCCCAAGAGT
TTCTTACAAGTAAGTTTCCTGAGCGTGAACAGCAGCGTGCCTGCCTCAGGGGACCCTGTG
CAAGTCACCCACATCTACAAGCAGTGCAGTGGGGGTCGGCTGGGTAGCTCAGCTGGACCG
AGCCCCCATATAAAGTCAAACATACTCTCAGGAAGCATTTGGAGCCTGTGGCGGGCAGTG
ACCGGCCCGCTTTTTGATTTTCAAGGAGATCCAGTTCAGCAAGGTGGGACCCTCGTTTTA
GGTCCAGGTCACTACATCCATTTTATACACCGTGACAGGAATAGATTGGATCACAAACCC
ATCAACTCTGTTTTACAGCTTGTGGGAGTCCAGCAGGTGGACTTCACAGGCAGACCTTCA
GTTATCCATGTG
//
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	match	44375	52962	201.15	+	.	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	cds	44375	44532	0.00	+	0	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	intron	44533	49440	0.00	+	.	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	cds	49441	49457	0.00	+	1	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	intron	49458	50003	0.00	+	.	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	cds	50004	50135	0.00	+	2	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	intron	50136	52837	0.00	+	.	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
gi|411115849|gb|JH977714.1|:subseq(3384670,102962)	GeneWise	cds	52838	52962	0.00	+	2	gi|411115849|gb|JH977714.1|:subseq(3384670,102962)-genewise-prediction-1
//