genewise output
Score 427.75 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000109_2.0    1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MSFL DPSFF +GMWSIG GALGAAALALLLANTD+FLSKPQ+A+LEYL 
                     MSFLHDPSFFNVGMWSIGVGALGAAALALLLANTDIFLSKPQRASLEYL 
gi|411115901|-108955 attccgcattaggattaggggcggggcgcccgaagatctacccgacgtc 
                     tcttaacgttatgtgctgtgctgccctctttcacatttcacagcgtaat 
                     gcccctaccccgggggccggcggtttgagcgccacatgcgcgaacggtg 


SPP00000109_2.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     E+IDLKTLEK                          PRTFKAKELW+K  
                     EEIDLKTLEK          E:E[gaa]        PRTFKAKELWDKK 
gi|411115901|-108808 ggagcaacgaGGTAAGCA  Intron 1   CAGAAcaatagagctgaa 
                     aatatactaa <1-----[108777:10715-1>  cgctacaatgaaa 
                     gaacgaaggg                          agtcaaggcgcgg 


SPP00000109_2.0   74 GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
gi|411115901|-107116 gggaaggcacgttctcgGTGAGTG  Intron 2   CAGggggcttca 
                     gctttctggcggttgga<0-----[107065:10403-0>accatccta 
                     ctgcgtgggacccctag                       gtgcgccgg 


SPP00000109_2.0  100 SMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK            
                       LD+LGVPLYAVVKE +RTEVKDFQPYFKGEIFLDEK            
                     PKLDELGVPLYAVVKEQVRTEVKDFQPYFKGEIFLDEK            
gi|411115901|-104008 catggcggcctgggagcgaaggagtccttaggatcgga            
                     cataatgtctacttaaatgcataatacatagatttaaa            
                     cggtggcgccccgggggcgcaggccgttcaaaccgtag            


SPP00000109_2.0  138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQ+RKMMFMGF+RLGVW NFF 
                                            KKFYGPQQRKMMFMGFVRLGVWSNFF 
gi|411115901|-103894 GTGTGTC  Intron 3   CAGaattgccccaaatagtgccggtaatt 
                     <0-----[103894:10323-0>aatagcaagattttgttgtgtggatt 
                                            ggccccggggggcggccggccgcccc 


SPP00000109_2.0  164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RA +GGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RARSGGFSGNLEGEGFILGGVFVVGSGKQ                     
gi|411115901|-103157 cgcaggttgacggggtacgggtgggtgacGTAAATG  Intron 4    
                     gcggggtcgatagagtttggttttgcgaa<0-----[103070:100117
                     gcgcacctacgacaccccgctcggatagg                     


SPP00000109_2.0  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQ--TLASEKK        
                        GILLEHREKEFGDKVNL SVLEA K IKPQ   LASEKK        
                        GILLEHREKEFGDKVNLASVLEAVKKIKPQAASLASEKK        
gi|411115901|-100119 CAGgaccgccgagtggagacgtgcgggaaaaccggatgtgaa        
                     -0>gtttaagaaatgaatatccttactaatacaccgtccaaa        
                        cttcgcaaaatataacatttgattggcaagtatacagag        


//
Making a E in phase 1 intron
>gi|411115901|gb|JH977662.1|:subseq(10805350,208955).pep
MSFLHDPSFFNVGMWSIGVGALGAAALALLLANTDIFLSKPQRASLEYLEEIDLKTLEKE
PRTFKAKELWDKKGAVIMAVRRPGCFLCREEAADLSSLKPKLDELGVPLYAVVKEQVRTE
VKDFQPYFKGEIFLDEKKKFYGPQQRKMMFMGFVRLGVWSNFFRARSGGFSGNLEGEGFI
LGGVFVVGSGKQGILLEHREKEFGDKVNLASVLEAVKKIKPQAASLASEKK
//
>gi|411115901|gb|JH977662.1|:subseq(10805350,208955).[108955:99998].sp
ATGTCCTTCCTCCACGATCCAAGCTTCTTCAACGTGGGGATGTGGTCGATCGGCGTGGGG
GCCCTGGGGGCTGCTGCTCTGGCACTGCTCCTGGCCAACACAGACATATTTCTGTCCAAG
CCCCAGCGAGCAAGCCTGGAGTATCTGGAGGAAATAGACCTGAAAACACTGGAGAAGGAA
CCAAGGACTTTCAAAGCAAAGGAGCTCTGGGACAAGAAGGGCGCTGTGATCATGGCTGTG
CGGAGGCCAGGCTGCTTCCTCTGTCGAGAGGAGGCTGCGGACCTGTCCTCCCTGAAGCCC
AAGTTGGATGAGCTGGGCGTGCCCCTCTACGCCGTGGTGAAGGAGCAGGTCAGGACCGAA
GTGAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGAAAAGAAGAAGTTC
TACGGCCCCCAGCAGCGGAAGATGATGTTCATGGGGTTCGTCCGGCTGGGCGTCTGGAGC
AACTTCTTCCGGGCCCGGAGCGGAGGCTTCTCTGGAAACCTGGAAGGCGAAGGCTTCATC
CTCGGGGGCGTTTTCGTGGTGGGATCTGGAAAGCAGGGCATTCTTCTCGAGCACCGAGAA
AAAGAATTTGGAGATAAAGTAAACCTAGCTTCTGTTCTGGAAGCTGTTAAGAAGATCAAA
CCACAGGCTGCAAGTTTAGCCTCAGAGAAAAAG
//
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	match	108955	100000	428.75	-	.	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	cds	108955	108778	0.00	-	0	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	intron	108777	107158	0.00	-	.	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	cds	107157	107066	0.00	-	2	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	intron	107065	104036	0.00	-	.	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	cds	104035	103895	0.00	-	0	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	intron	103894	103236	0.00	-	.	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	cds	103235	103071	0.00	-	0	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	intron	103070	100117	0.00	-	.	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
gi|411115901|gb|JH977662.1|:subseq(10805350,208955)	GeneWise	cds	100116	100000	0.00	-	0	gi|411115901|gb|JH977662.1|:subseq(10805350,208955)-genewise-prediction-1
//