genewise output
Score 353.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000041_2.0    1 MEPLAAYPLKCSGPRAKVFAVLLSIVLCTVTLFLLQLKFLKPKINSFYA 
                     MEPLAA PL+ SGPRAK +AVLL++ LC  TL+LLQL+  +P+  SFYA 
                     MEPLAAQPLR-SGPRAKALAVLLALALCAGTLLLLQLRARRPRARSFYA 
gi|411115679|g100000 agccggcccc tgcagagcggccgcgctggaccccccagcaccgcattg 
                     tactccactg cgcgcactctttctctgcgcttttatgcggcgcggtac 
                     ggtgcggcgc ggcgcgggggggcgggcggggggggggccgcgcccccg 


SPP00000041_2.0   50 FEVKDAKGRTVSLEKYKGK                       VSLVVNV 
                     FEVKDA GR VSLEK+KGK                       V+LV NV 
                     FEVKDAAGRPVSLEKFKGK                       VTLVANV 
gi|411115679|g100144 tggaggggacgtcgatagaGTAAGTG  Intron 1   GAGgacggag 
                     tataaccggctctaataga<0-----[100201:10075-0>tcttcat 
                     cgggtcgcgcgtgggcaca                       cgagccg 


SPP00000041_2.0   76 ASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVES 
                     ASDC+LTD NYL L+ LH+EFGP HFSVLAFPCNQFGE+EPRP+KEV S 
                     ASDCRLTDSNYLALQALHREFGPFHFSVLAFPCNQFGEAEPRPTKEVVS 
gi|411115679|g100781 gagtccagaattgccgcccgtgctctagcgtctactggggcccaagggt 
                     cgaggtcagaatctactagatgctatgttctcgaatgacacgccaattc 
                     ccccgccccccggggggccgcccccccggcccccgcggcgccccggcgc 


SPP00000041_2.0  125 FARKNYGVTFPIFHKIKILGSEGEPAFRFLV                   
                     FAR  YGVTFPIFHKIKILG E EPAFRFLV                   
                     FARSTYGVTFPIFHKIKILGPEAEPAFRFLV                   
gi|411115679|g100928 tgaaatggatcatcaaaacgcgggcgtctcg                   
                     tcggcagtctcttaatattgcacacctgttt                   
                     tcacccccccccccgtgccacgcgtacgttc                   


SPP00000041_2.0  156                           SSKKEPRWNFWKYLVNPEGQVVK 
                                               SS KEPRWNFWKYLV+PEG+VV+ 
                               D:D[gat]        SSNKEPRWNFWKYLVSPEGRVVR 
gi|411115679|g101021 GGTGAGTC  Intron 2   CAGATttaagcatattatcgacggcgga 
                      <1-----[101022:10299-1>  ccaaacggatgaattgcaggttg 
                                               tccgggggccggcgcccgccggg 


SPP00000041_2.0  180 FWKPEEPIEVIRPDIAALVRQVIIKKKEDL                    
                      W+PEEP++ IRP++A L+RQ+II+K+EDL                    
                     SWRPEEPVDAIRPEVADLIRQMIIRKREDL                    
gi|411115679|g103063 ttccggcgggaccggggcaccaaacaaggc                    
                     cggcaactactgcatcattgatttgagaat                    
                     cggcggcgcccgtgggtgcgggctagggcc                    


//
Making a D in phase 1 intron
>gi|411115679|gb|JH977884.1|:subseq(352441,203152).pep
MEPLAAQPLRSGPRAKALAVLLALALCAGTLLLLQLRARRPRARSFYAFEVKDAAGRPVS
LEKFKGKVTLVANVASDCRLTDSNYLALQALHREFGPFHFSVLAFPCNQFGEAEPRPTKE
VVSFARSTYGVTFPIFHKIKILGPEAEPAFRFLVDSSNKEPRWNFWKYLVSPEGRVVRSW
RPEEPVDAIRPEVADLIRQMIIRKREDL
//
>gi|411115679|gb|JH977884.1|:subseq(352441,203152).[100000:103152].sp
ATGGAGCCTCTGGCCGCGCAGCCCCTGCGCTCGGGGCCCAGGGCCAAGGCGCTGGCGGTG
CTGCTGGCCCTGGCGCTGTGCGCGGGGACGCTGCTGCTGCTGCAGCTGAGGGCCCGCAGG
CCCCGGGCCCGCAGCTTCTACGCGTTCGAGGTGAAGGATGCCGCGGGCAGGCCCGTGTCT
CTGGAGAAGTTCAAAGGCAAAGTCACGCTAGTGGCCAACGTGGCCAGCGACTGCCGGCTC
ACCGACAGCAACTACTTGGCGCTGCAGGCGCTGCACCGCGAGTTCGGCCCCTTCCACTTC
AGCGTGCTGGCCTTCCCCTGCAACCAGTTCGGGGAGGCCGAGCCCCGCCCCACCAAGGAG
GTCGTGTCCTTTGCCAGAAGCACCTACGGCGTCACCTTCCCCATCTTCCACAAGATTAAG
ATCCTCGGACCCGAGGCCGAGCCTGCATTCCGGTTTCTTGTCGATTCTTCCAACAAGGAG
CCGAGGTGGAACTTCTGGAAGTACCTGGTCAGCCCCGAGGGCCGCGTGGTGAGGTCCTGG
CGGCCCGAGGAGCCCGTGGACGCCATCCGGCCTGAGGTGGCGGATCTGATCCGGCAGATG
ATCATTCGAAAGAGGGAGGACCTC
//
gi|411115679|gb|JH977884.1|:subseq(352441,203152)	GeneWise	match	100000	103152	353.45	+	.	gi|411115679|gb|JH977884.1|:subseq(352441,203152)-genewise-prediction-1
gi|411115679|gb|JH977884.1|:subseq(352441,203152)	GeneWise	cds	100000	100200	0.00	+	0	gi|411115679|gb|JH977884.1|:subseq(352441,203152)-genewise-prediction-1
gi|411115679|gb|JH977884.1|:subseq(352441,203152)	GeneWise	intron	100201	100759	0.00	+	.	gi|411115679|gb|JH977884.1|:subseq(352441,203152)-genewise-prediction-1
gi|411115679|gb|JH977884.1|:subseq(352441,203152)	GeneWise	cds	100760	101021	0.00	+	0	gi|411115679|gb|JH977884.1|:subseq(352441,203152)-genewise-prediction-1
gi|411115679|gb|JH977884.1|:subseq(352441,203152)	GeneWise	intron	101022	102991	0.00	+	.	gi|411115679|gb|JH977884.1|:subseq(352441,203152)-genewise-prediction-1
gi|411115679|gb|JH977884.1|:subseq(352441,203152)	GeneWise	cds	102992	103152	0.00	+	2	gi|411115679|gb|JH977884.1|:subseq(352441,203152)-genewise-prediction-1
//