genewise output
Score 399.08 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000040_2.0    1 MVAATVAAAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGS    
                     ++ A + AAWLLL A AC+Q+EQDFYDFKAVNIRGKLVSLEKYRGS    
                     VMVAALGAAWLLLAAVACSQREQDFYDFKAVNIRGKLVSLEKYRGS    
gi|411115943|-107076 gagggcgggtcccggggttccgcgttgtaggaacgatgtcgatcgt    
                     tttcctgccgtttcctcgcagaaataatactatggattctaaaggc    
                     cggtaggggggcggcgctgggagcctccgtcccgcgggggggcgtg    


SPP00000040_2.0   47                        VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFT++HYRALQQLQR 
                                            VSLVVNVASECGFTEEHYRALQQLQR 
gi|411115943|-106938 GTGAGTG  Intron 1   CAGgtcggaggagtgtaggctcgcccccc 
                     <0-----[106938:10174-0>tctttatcgaggtcaaaagctaatag 
                                            gcgggcgccgtccaggccgcgggagg 


SPP00000040_2.0   73 DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSK+AVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAVT 
gi|411115943|-101668 gcgccctagcgtctactgccgcgaaagagatgccatagttcataaggga 
                     atgcaatattctcgaatgaaacagaaatagtcggcagtctcttgatctc 
                     cggcccctgtcccccgtcaggccccggcgttccccctctccgtcgcagt 


SPP00000040_2.0  122 GTGAHPAFKYLA                          TSGKEPTWNFW 
                     GTGAHPAFKYL                           TSGKEPTWNFW 
                     GTGAHPAFKYLT          Q:Q[caa]        TSGKEPTWNFW 
gi|411115943|-101521 gaggccgtatcaCGTGAGTC  Intron 2   TAGAAatgagcatatt 
                     gcgcacctaatc <1-----[101484:10016-1>  ccgaaccgatg 
                     cttcttccgcgc                          ttaggctgccg 


SPP00000040_2.0  146 KYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL        
                     KYLVAPDGKVVGAWDPTVSVEE+RP ITALVRKLIL KREDL        
                     KYLVAPDGKVVGAWDPTVSVEEIRPHITALVRKLILKKREDL        
gi|411115943|-100125 atcggcggaggggtgcagtgggaaccaagcgaacacaacggt        
                     aattccagattgcgacctctaatgcatccttgatttaagaat        
                     gcagcataggagtgcacgggggcactcaatgggccgggaaca        


//
Making a Q in phase 1 intron
>gi|411115943|gb|JH977620.1|:subseq(1989027,207019).pep
VMVAALGAAWLLLAAVACSQREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFT
EEHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAV
TGTGAHPAFKYLTQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEIRPHITALVRKLI
LKKREDL
//
>gi|411115943|gb|JH977620.1|:subseq(1989027,207019).[107076:99998].sp
GTCATGGTGGCTGCACTGGGGGCGGCGTGGCTGCTCCTGGCGGCCGTGGCCTGTTCGCAG
CGGGAACAGGACTTCTATGACTTCAAGGCTGTCAACATCCGGGGCAAGTTGGTGTCGCTG
GAGAAGTACCGGGGTTCGGTGTCCCTGGTGGTGAACGTGGCCAGCGAGTGTGGCTTCACA
GAGGAGCACTACCGGGCCCTGCAGCAGCTACAGCGGGACCTGGGGCCCCACCACTTCAAT
GTGCTTGCCTTCCCCTGCAACCAGTTTGGCCAACAGGAGCCCGACAGCAACAAGGAGATC
GAGAGTTTTGCCCGCCGCACCTACAGTGTCTCTTTCCCCATGTTTAGCAAGGTCGCAGTG
ACTGGCACTGGTGCCCATCCTGCCTTCAAGTACCTGACCCAAACTTCTGGAAAGGAGCCC
ACTTGGAACTTCTGGAAGTACCTAGTGGCCCCAGATGGAAAGGTGGTAGGGGCTTGGGAC
CCAACCGTGTCGGTGGAGGAGATCAGACCCCATATCACAGCACTTGTGAGGAAGCTCATC
CTGAAGAAGCGAGAAGACTTA
//
gi|411115943|gb|JH977620.1|:subseq(1989027,207019)	GeneWise	match	107076	100000	399.08	-	.	gi|411115943|gb|JH977620.1|:subseq(1989027,207019)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(1989027,207019)	GeneWise	cds	107076	106939	0.00	-	0	gi|411115943|gb|JH977620.1|:subseq(1989027,207019)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(1989027,207019)	GeneWise	intron	106938	101747	0.00	-	.	gi|411115943|gb|JH977620.1|:subseq(1989027,207019)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(1989027,207019)	GeneWise	cds	101746	101485	0.00	-	0	gi|411115943|gb|JH977620.1|:subseq(1989027,207019)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(1989027,207019)	GeneWise	intron	101484	100161	0.00	-	.	gi|411115943|gb|JH977620.1|:subseq(1989027,207019)-genewise-prediction-1
gi|411115943|gb|JH977620.1|:subseq(1989027,207019)	GeneWise	cds	100160	100000	0.00	-	2	gi|411115943|gb|JH977620.1|:subseq(1989027,207019)-genewise-prediction-1
//