genewise output
Score 341.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000026_2.0    1 MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     MS  RLCRLLKPALLCGALA PG+A TM                      
                     MSFSRLCRLLKPALLCGALAVPGVASTM                      
gi|411115890|-101666 aatacctcccacgcctggcggcgggaaaGTGAGTG  Intron 1     
                     tgtggtggttaccttggctctcgtcgct<0-----[101582:100595 
                     gccccgccgggagtgttttcgccgcccg                      


SPP00000026_2.0   29    CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCA+SMHEFSAKDIDG MVNLDKY                
                        CASRDDWRCAQSMHEFSAKDIDGRMVNLDKY                
gi|411115890|-100597 CAGtgtcggtctgctacgttgagaggcagacgat                
                     -0>gccgaagggcactaatccaataggttataaa                
                        cccttcgcttgagcgcacgcccgcgtcgcgc                


SPP00000026_2.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCIVTNVASQXGKT+VNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTDVNYTQL 
gi|411115890|-100501 CGGTGGGTA  Intron 2   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[100499:10042-2> gttgttcatccaggacataacat 
                                               ccgcccccgcgaacaacacctgt 


SPP00000026_2.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFG+Q                       E 
                     VDLHARYAECGLRILAFPCNQFGRQ                       E 
gi|411115890|-100355 ggccgctggtgtcacgtctactgacGTGCGTG  Intron 3   CAGg 
                     tatacgacaggtgttctcgaatgga<0-----[100280:10015-0>a 
                     ccgccattgctagcgtctccgcggg                       g 


SPP00000026_2.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PG+N EIKEFAAGYNVKFDM+SKICVNGDDAHPLWKWMK+QPKG+GILG 
                     PGTNAEIKEFAAGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGILG 
gi|411115890|-100146 cgaaggaagtgggtagatgataaatgaggggccctataagccagagacg 
                     cgcacataatccgaatatatagatgtagaacactgagtatacagggttg 
                     agttagcagctccttcactgtcgctgcattcctgggggacgcgggccga 


SPP00000026_2.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
gi|411115890|g-99999 AAGTAAGTG  Intron 4   TAGTgaatataa                
                       <2-----[99997:99876]-2> ctagatca                
                                               ccagcccg                


SPP00000026_2.0  168                        FLIDKNGCVVKRYGPMEEPLV      
                                            FLIDKNGCVVKRYGPMEEP V      
                                            FLIDKNGCVVKRYGPMEEPQV      
gi|411115890|g-99850 GTAAGGA  Intron 5   CAGtcagaagtggactgcaggccg      
                     <0-----[99850:99668]-0>tttaaaggttagagctaacat      
                                            cctcgtttggggttcgagcga      


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>gi|411115890|gb|JH977673.1|:subseq(4268554,200594).pep
MSFSRLCRLLKPALLCGALAVPGVASTMCASRDDWRCAQSMHEFSAKDIDGRMVNLDKYR
GFVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGRQEPGTNAEIKEFA
AGYNVKFDMYSKICVNGDDAHPLWKWMKVQPKGRGILGNAIKWNFTKFLIDKNGCVVKRY
GPMEEPQV
//
>gi|411115890|gb|JH977673.1|:subseq(4268554,200594).[101666:99603].sp
ATGAGCTTCAGCCGCCTGTGCCGCCTGCTGAAGCCAGCGCTTCTGTGTGGTGCTCTTGCC
GTGCCCGGCGTGGCCAGCACCATGTGCGCCTCCCGTGATGACTGGCGCTGTGCTCAGTCA
ATGCACGAGTTCTCAGCCAAGGACATCGACGGGCGCATGGTTAACCTGGACAAGTACCGG
GGCTTCGTGTGCATCGTCACCAACGTGGCCTCGCAATGAGGCAAAACAGACGTAAACTAC
ACTCAGCTTGTCGACCTGCACGCCCGATATGCTGAGTGCGGTTTACGGATCCTGGCTTTC
CCTTGCAACCAGTTCGGGAGGCAGGAGCCAGGGACTAATGCAGAGATCAAAGAGTTCGCT
GCCGGCTATAATGTCAAATTCGATATGTATAGCAAGATCTGTGTGAACGGAGATGATGCC
CACCCTCTGTGGAAGTGGATGAAAGTCCAGCCCAAGGGGAGGGGCATCCTGGGAAATGCC
ATCAAATGGAACTTCACCAAGTTCCTCATTGACAAGAATGGTTGTGTGGTGAAGCGGTAT
GGTCCCATGGAAGAGCCCCAGGTA
//
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	match	101666	99605	341.81	-	.	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	cds	101666	101583	0.00	-	0	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	intron	101582	100595	0.00	-	.	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	cds	100594	100500	0.00	-	0	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	intron	100499	100426	0.00	-	.	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	cds	100425	100281	0.00	-	1	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	intron	100280	100150	0.00	-	.	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	cds	100149	99998	0.00	-	0	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	intron	99997	99876	0.00	-	.	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	cds	99875	99851	0.00	-	1	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	intron	99850	99668	0.00	-	.	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
gi|411115890|gb|JH977673.1|:subseq(4268554,200594)	GeneWise	cds	99667	99605	0.00	-	0	gi|411115890|gb|JH977673.1|:subseq(4268554,200594)-genewise-prediction-1
//