genewise output
Score 421.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000021_2.0    1 MARLLQASCLLSLLLAGFVSQSRGQEKSK                     
                     MARLL+ASCL SLLLAG+V  SRGQEKSK                     
                     MARLLRASCLFSLLLAGLV-PSRGQEKSK                     
gi|411115877|gb45664 agccccgttcttcccggcg cacgcgataGTGAGTG  Intron 1    
                     tcgttgccgttctttcgtt cgggaaaca<0-----[45748:49996] 
                     gcggcgacctccgcgtccg gcggggggg                     


SPP00000021_2.0   30    MDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYXGL 
                         DCH G+SGTI+EYGALT++GEEYIPFKQYAGKYVLFVNVASYXGL 
                        TDCHAGVSGTIFEYGALTLNGEEYIPFKQYAGKYVLFVNVASYXGL 
gi|411115877|gb49994 CAGagtcgggagaatgtggcacagggtactactggatgctgaggattgc 
                     -0>cagacgtggcttaagctctagaaatctaaacgaattttatcgaggt 
                        gcctttgcccccgcacccccgggccccggtccaccctccgcccacg 


SPP00000021_2.0   76 TGQYI                          LNALQEELAPFGLVILGF 
                     TGQY+                          LNALQEEL PFGLVILGF 
                     TGQYV          E:E[gaa]        LNALQEELQPFGLVILGF 
gi|411115877|gb50135 agctgGGTAAGAG  Intron 2   CAGAAcagccggccctgcgacgt 
                     cgaat <1-----[50151:51253]-1>  tactaaatactgttttgt 
                     gcgcc                          gtaaggggaattgctgcc 


SPP00000021_2.0  100 PCNQFGKQEPGENSEILPTL                          YVR 
                     PCNQFGKQEPGENSEILPTL                          +VR 
                     PCNQFGKQEPGENSEILPTL           K:K[aag]       HVR 
gi|411115877|gb51310 ctactgacgcggatgaccacAAGTGAGTG  Intron 3   TAGGcgc 
                     cgaatgaaacgaacattcct  <2-----[51372:51822]-2> atg 
                     cccataaggaagcggcaccc                          taa 


SPP00000021_2.0  124 PGGGFVPNFQLFEKGDVNGEKEQKFYTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQK YTFLK                    
                     PGGGFVPNFQLFEKGDVNGEKEQKVYTFLK                    
gi|411115877|gb51833 cgggtgcatcctgagggaggagcagtatca                    
                     cgggttcatattaagatagaaaaatactta                    
                     gtgcccctcactgaatgcggagggccgcgg                    


SPP00000021_2.0  154                        NSCPPTSELLGTSDRLFWEPMKVHDI 
                                            NSCPPTSELLG+ +RLFWEPMKVHD+ 
                                            NSCPPTSELLGSPNRLFWEPMKVHDV 
gi|411115877|gb51923 GTGAGTG  Intron 4   CAGattccatgccgtcaccttgcaagcgg 
                     <0-----[51923:52368]-0>acgccccattgccagttgactataat 
                                            ccctccggcgcgtccccgacggcccc 


SPP00000021_2.0  180 RWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK   
                     RWNFEKFLVGPDG PIMRW+HRTTVSNVKMDIL+YMR+QAALGV+ K   
                     RWNFEKFLVGPDGKPIMRWYHRTTVSNVKMDILAYMRQQAALGVRGK   
gi|411115877|gb52447 ctatgatcggcggacaacttccaagaagaagacgtaaccggcggaga   
                     ggataatttgcagacttggaagcctgatatattcatgaacctgtgga   
                     cgctggcggggctaccgcgccgcgccccggccgccggggacggcggg   


//
Making a E in phase 1 intron
Making a K in phase 2 intron
>gi|411115877|gb|JH977686.1|:subseq(2031391,102587).pep
MARLLRASCLFSLLLAGLVPSRGQEKSKTDCHAGVSGTIFEYGALTLNGEEYIPFKQYAG
KYVLFVNVASYXGLTGQYVELNALQEELQPFGLVILGFPCNQFGKQEPGENSEILPTLKH
VRPGGGFVPNFQLFEKGDVNGEKEQKVYTFLKNSCPPTSELLGSPNRLFWEPMKVHDVRW
NFEKFLVGPDGKPIMRWYHRTTVSNVKMDILAYMRQQAALGVRGK
//
>gi|411115877|gb|JH977686.1|:subseq(2031391,102587).[45664:52587].sp
ATGGCCCGGCTGCTCCGGGCATCCTGCCTTTTCTCCCTGCTCCTGGCTGGCCTCGTGCCG
AGCCGGGGGCAGGAGAAGTCGAAGACGGACTGCCATGCTGGTGTGAGCGGCACCATCTTC
GAGTACGGAGCCCTCACCCTCAACGGGGAGGAGTACATCCCCTTCAAGCAGTATGCCGGC
AAATACGTCCTCTTTGTCAACGTGGCCAGCTACTGAGGCCTGACGGGCCAGTACGTCGAA
CTGAATGCACTACAGGAGGAGCTGCAACCATTTGGTCTGGTCATTCTGGGCTTCCCCTGC
AACCAATTTGGAAAACAGGAGCCAGGAGAGAACTCGGAGATCCTACCCACCCTCAAGCAT
GTACGACCGGGTGGGGGCTTCGTCCCCAATTTCCAACTCTTTGAGAAAGGAGATGTGAAC
GGGGAGAAAGAGCAGAAGGTCTACACGTTCCTGAAGAACTCCTGCCCTCCCACCTCGGAG
CTCCTGGGCTCGCCTAACCGCCTCTTCTGGGAACCCATGAAGGTCCACGACGTCCGCTGG
AACTTTGAGAAGTTCCTGGTGGGGCCGGACGGTAAACCCATCATGCGCTGGTACCACCGG
ACCACGGTCAGCAACGTCAAGATGGACATCCTGGCCTACATGAGGCAGCAGGCAGCCCTG
GGGGTCAGGGGGAAG
//
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	match	45664	52587	421.54	+	.	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	cds	45664	45747	0.00	+	0	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	intron	45748	49996	0.00	+	.	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	cds	49997	50150	0.00	+	0	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	intron	50151	51253	0.00	+	.	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	cds	51254	51371	0.00	+	2	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	intron	51372	51822	0.00	+	.	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	cds	51823	51922	0.00	+	1	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	intron	51923	52368	0.00	+	.	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
gi|411115877|gb|JH977686.1|:subseq(2031391,102587)	GeneWise	cds	52369	52587	0.00	+	0	gi|411115877|gb|JH977686.1|:subseq(2031391,102587)-genewise-prediction-1
//