Command line: [exonerate -m p2g --showtargetgff -q selsseq.fa.U_to_X -t gi|411115939|gb|JH977624.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens) 
        Target: gi|411115939|gb|JH977624.1|:subseq(5707468,200514) Eptesicus fuscus unplaced genomic scaffold scaffold00014, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 526
   Query range: 31 -> 189
  Target range: 100442 -> 99960

     32 : ThrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyrValValPheGlnLysL :     51
          ..!!:!|||||||||:!:||||||.!!||||||||||||!  !.!|||||||||||||
          ValPheGlyTrpTyrValValPheGlyCysIleLeuLeuLeuAlaValPheGlnLysL
 100442 : GTCTTTGGCTGGTACGTGGTCTTTGGCTGCATCCTCCTGTTGGCAGTCTTTCAGAAGC : 100385

     52 : euSerAlaArgLeuArgAlaLeuArgGlnArgGlnLeuAspArgAlaAlaAlaAlaVa :     70
          |||||.!!!.!|||||||||! !||||||||||||  !||||||!.!|||!.!!.!||
          euSerThrHisLeuArgAlaSerArgGlnArgGlnThrAspArgValAlaValGlyVa
 100384 : TCTCCACCCACCTGAGGGCTTCCAGGCAGAGGCAGACAGACAGGGTTGCAGTTGGAGT : 100328

     71 : lGluProAspValValValLysArgGlnGluAlaLeuAlaAlaAlaArgLeuLysMet :     89
          |||||||:!!! !||||||!:! !!||||||||||||||||||!.!!.!||||||!!:
          lGluProAsnAspValValArg***GlnGluAlaLeuAlaAlaValHisLeuLysIle
 100327 : GGAACCCAATGATGTTGTGAGATGACAGGAGGCGTTAGCAGCCGTTCACCTGAAAATA : 100271

     90 : GlnGluGluLeuAsnAlaGlnValGluLysHis-LysGluLysLeuLysGlnLeuGlu :    108
          ||||||||||||!:!||||||:!!|||!:!|||#||||||||||||::! !!||||||
          GlnGluGluLeuSerAlaGlnLeuGluArgHis#LysGluLysLeuArg***LeuGlu
 100270 : CAGGAAGAATTAAGTGCCCAATTGGAAAGGCACAAAGGAGAAACTACGATAGCTTGAG : 100213

    109 : GluGluLysArgArgGlnLysIleGluMetTrpAspSerMetGlnGluGlyLysSerT :    128
          |||||||||||||||::!||||||||||||||||||!:!|||||||||||||||!!!|
          GluGluLysArgArgArgLysIleGluMetTrpAspAsnMetGlnGluGlyLysCysT
 100212 : GAAGAGAAAAGGAGAAGGAAGATTGAAATGTGGGACAACATGCAAGAGGGGAAATGCT : 100153

    129 : yrLysGlyAsnAlaLysLysProGlnGluGluAspSerProGlyProSerThrSerSe :    147
          ||!:!.!!:!!:!!! !|||||||||||||||||||||||||||||||||||||||||
          yrArgSerHisSerMetLysProGlnGluGluAspSerProGlyProSerThrSerSe
 100152 : ACAGAAGCCATTCTATGAAGCCTCAGGAAGAAGACAGCCCAGGGCCTTCTACTTCATC : 100096

    148 : rValLeuLysArgLys<->SerAsp----ArgLysProLeuArgGlyGlyGlyTyrAs :    164
          |! !|||   ! !!     !!!.!.####!:!||||||||||||||||||||||||||
          rGlyLeuProThrThrCysThrGln####GlnLysProLeuArgGlyGlyGlyTyrAs
 100095 : CGGCCTCCCCACAACCTGCACACAAGTGACAGAAGCCTCTTCGTGGGGGTGGTTATAA : 100038

    165 : nProLeuSerGlyGluGlyGlyGlyAlaCysSerTrpArgProGlyArgArgGlyPro :    183
          |||||||||||||||||||||| !!||||||:!!|||||||||||| !!|||||||||
          nProLeuSerGlyGluGlyGlyArgAlaCysAlaTrpArgProGlyCysArgGlyPro
 100037 : CCCTTTGTCTGGGGAAGGAGGGAGAGCCTGCGCCTGGAGACCTGGATGCAGAGGCCCA :  99981

    184 : SerSerGlyGlyUnkGly :    189
          ||||||||||||   |||
          SerSerGlyGly***Gly
  99980 : TCATCTGGCGGATGAGGC :  99961

vulgar: SPP00000100_2.0 31 189 . gi|411115939|gb|JH977624.1|:subseq(5707468,200514) 100442 99960 - 526 M 69 207 F 0 1 M 52 156 G 0 3 M 2 6 F 0 4 M 35 105
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	gene	99961	100442	526	-	.	gene_id 1 ; sequence SPP00000100_2.0 ; gene_orientation .
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	cds	99961	100442	.	-	.	
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	exon	99961	100442	.	-	.	insertions 3 ; deletions 0 ; frameshifts 5
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	similarity	99961	100442	526	-	.	alignment_id 1 ; Query SPP00000100_2.0 ; Align 100443 32 207 ; Align 100235 101 156 ; Align 100076 153 6 ; Align 100066 155 105
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000100_2.0 # Protein # Selenoprotein S (SelS) # Human (Homo sapiens) 
        Target: gi|411115939|gb|JH977624.1|:subseq(5707468,200514) Eptesicus fuscus unplaced genomic scaffold scaffold00014, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 107
   Query range: 12 -> 45
  Target range: 100517 -> 100418

     13 : AlaLeuGluThrGluGlyLeuArgPheLeuHisThrThrValGlySerLeuLeuAlaT :     32
          .!!|||:!!:!!|||||||||!.!||||||:!!..!|||||||||||||||||||||!
          ThrLeuGlnSerGluGlyLeuHisPheLeuAsnValThrValGlySerLeuLeuAlaI
 100517 : ACTCTGCAGTCAGAGGGGCTACACTTCCTGAATGTCACTGTGGGCTCCCTGCTGGCTA : 100460

     33 : hrTyrGlyTrpTyrIleValPheSerCysIleLeuLeuTyr :     45
           !||||||||||||!!:||||||.!!!!   !:!!:!!!:!
          leTyrGlyTrpTyrMetValPheGlyTrpTyrValValPhe
 100459 : TCTATGGCTGGTACATGGTCTTTGGCTGGTACGTGGTCTTT : 100419

vulgar: SPP00000100_2.0 12 45 . gi|411115939|gb|JH977624.1|:subseq(5707468,200514) 100517 100418 - 107 M 33 99
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-26
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	gene	100419	100517	107	-	.	gene_id 2 ; sequence SPP00000100_2.0 ; gene_orientation .
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	cds	100419	100517	.	-	.	
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	exon	100419	100517	.	-	.	insertions 0 ; deletions 0
gi|411115939|gb|JH977624.1|:subseq(5707468,200514)	exonerate:protein2genome:local	similarity	100419	100517	107	-	.	alignment_id 2 ; Query SPP00000100_2.0 ; Align 100518 13 99
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
