Command line: [exonerate -m p2g --showtargetgff -q selnseq.fa -t genomicseln.fa -E]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 119
   Query range: 1 -> 575
  Target range: 12855 -> 191767

      2 : GlyArgAlaArgProGlyGlnArgGlyProProSerProGlyProAlaAlaGln  >> :     20
          |||  !..!!!! !!|||!  ||||||||| !!! !|||||| !!  !|||!:!    
          GlyAlaCysSerAlaGlyLeuArgGlyProAlaPheProGlySerArgAlaArg-+  
  12856 : GGCGCCTGCAGCGCGGGCCTCCGCGGTCCAGCGTTCCCGGGCTCCAGGGCGCGGct.. :  12912

     21 : >> Target Intron 1 >>>>  ProProAlaProProArgArgArgAlaArgSer :     30
                 2040 bp           |||||| !!||| !!|||! !..!..!  !|||
                                 ++ProProProProSerArgLeuGluCysTyrSer
  12913 : .......................agCCACCCCCACCTTCCAGGCTTGAATGCTACTCA :  14980

     31 : LeuAlaLeuLeuGlyAlaLeuLeuAla{A}  >>>> Target Intron 2 >>>>  :     40
          :!!  !:!!!!!  !  !|||  !  !{|}           5500 bp          
          ValTyrIlePheProArgLeuArgMet{A}++                         +
  14981 : GTGTATATTTTCCCCCGCCTCAGAATG{G}gt.........................a :  20509

     41 :  {la}AlaAlaAlaAlaAlaValArgValCysAlaArgHisAlaGluAlaGlnAla{A :     58
           {||}  !!.!:!!  !! !:!!  !:!!|||:!!!:!.!.  !|||  !  !!.!{!
          +{la}MetValSerMetGluIleAspIleCysSerLysGluLysGluLysValGly{G
  20510 : g{CT}ATGGTTTCCATGGAAATAGACATCTGCTCTAAGGAGAAAGAAAAGGTGGGG{G :  20564

     59 : }  >>>> Target Intron 3 >>>>  {la}AlaArgGlnGluLeuAlaLeuLys :     66
          }           9027 bp           {.!}  !!!!:!!   :!!  !||||||
          }++                         ++{ly}LeuSerGluPheValTyrLeuLys
  20565 : }gt.........................ag{GA}TTAAGTGAGTTTGTATATTTAAAG :  29615

     67 : ThrLeuGlyThrAspGlyLeuPheLeuPheSerSerLeuAspThrAspGlyAspMetT :     86
          ! !  ! !!  !!!:  !|||  !! !!:!! !:!!! ! !!! !:!!  !|||   |
          ArgAlaArgLeuGluLeuLeuSerProTyrLeuAlaArgHisIleAsnTyrAspTyrT
  29616 : AGAGCACGCTTAGAACTACTTAGTCCGTATTTAGCACGGCACATAAATTATGACTACT :  29675

     87 : yrIleSerProGluGluPhe{Ly}  >>>> Target Intron 4 >>>>  {s}Pr :     94
          ||.!!!!!||||||!    !{:!}           3361 bp           {!}! 
          yrPheCysProGluAlaSer{Gl}++                         ++{u}Le
  29676 : ATTTTTGTCCAGAGGCCAGT{GA}gt.........................ag{A}CT :  33060

     95 : oIleAlaGluLysLeuThrGlySerCysSerValThrGlnThrGlyValGlnTrpCys :    113
          !  !:!!|||  !! !!:!  !!!! ! ..!  !! !...! !|||..!.!.|||!! 
          uAlaSerGluValProSerProCysArgGlnProArgSerLysGlyThrAsnTrpTrp
  33061 : TGCCTCGGAGGTGCCCAGTCCTTGCAGGCAACCTAGATCCAAAGGCACCAACTGGTGG :  33117

    114 : SerHisSerSerLeuGlnProGlnLeuProTrpLeuAsnUnkSerSerCysLeuSerL :    133
           !!   :!!!!!:!!...||||||  !  !!! :!!.!.     !! !|||!!!!!!!
          ProAlaAlaThrValSerProGlnAlaCysCysValGlnLeuValLeuCysPheThrP
  33118 : CCTGCAGCCACAGTCAGTCCACAGGCATGTTGTGTTCAGCTCGTGTTGTGTTTTACAT :  33177

    134 : euLeu{Ar}  >>>> Target Intron 5 >>>>  {g}SerThrProAlaAlaSe :    141
          !!|||{||}           3360 bp           {|}|||  !|||||| !! !
          heLeu{Ar}-+                         +-{g}SerPheProAlaProAr
  33178 : TTTTG{AG}tt.........................at{G}TCCTTCCCTGCCCCTCG :  36561

    142 : rCysGlu  >>>> Target Intron 6 >>>>  GluGluGluLeuProProAspP :    151
          !|||              6315 bp             !|||||||||  !|||    
          gCysPro++                         ++MetGluGluLeuArgProArgG
  36562 : CTGCCCCgt.........................agATGGAGGAACTGAGGCCCCGAG :  42906

    152 : roSerGluGluThrLeuThrIleGluAlaArg{P}  >>>> Target Intron 7  :    162
           !.!!:!!:!!  !:!! !!  !.!..!! !!{ }           11080 bp    
          luGlyLysGlnLeuValProGlyHisThrGly{T}++                     
  42907 : AGGGGAAGCAACTTGTTCCAGGTCACACAGGA{A}gt..................... :  42942

    163 : >>>>  {he}GlnProLeuLeuProGluThrMet{Th}  >>>> Target Intron :    171
                { !}...||||||  !||||||  !   {..}           9002 bp  
              ++{hr}SerProLeuGlyProGluGlyHis{Va}++                  
  42943 : ....ag{CC}TCCCCTCTTGGGCCTGAGGGCCAC{GT}gt.................. :  54050

    172 :  8 >>>>  {r}LysSerLysAspGlyPheLeuGlyValSerArg{Le}  >>>> Ta :    183
                   {!}   !!!!....!||||||! !||||||  !|||{! }         
                 ++{l}ProThrSerSerGlyPheHisGlyValValArg{Ar}+-       
  54051 : .......ag{G}CCCACGAGCAGTGGCTTTCATGGCGTGGTGCGG{CG}gg....... :  63088

    184 : rget Intron 9 >>>>  {u}AlaLeuSerGlyLeuArgAsnTrpThrAlaAlaAl :    195
            2964 bp           {!}  !:!!|||||||||!.!  !|||..!|||..!  
                            ++{g}ArgMetSerGlyLeuHisAlaTrpValAlaCysLe
  63089 : ..................ag{G}CGCATGTCTGGATTGCATGCCTGGGTTGCATGCCT :  66084

    196 : aSerProSerAlaValPhe{Al}  >>>> Target Intron 10 >>>>  {a}Th :    203
          !|||  !.!!  !! !  !{  }            6829 bp           {!}  
          uSerCysGlyLeuAspThr{Gl}++                          ++{n}Ar
  66085 : AAGTTGTGGGCTGGATACC{CA}gt..........................ag{G}CG :  72937

    204 : rArgHisPheGlnProPheLeuProProProGlyGlnGluLeuGlyGluProTrpTrp :    222
          !!:!  !!::!  |||!!.||||||  !  !  !:!!   ! !..!    !!  !|||
          gLysAlaTrpLeuProLeuLeuProGlyLysProLysProProSerCysSerLeuTrp
  72938 : GAAAGCTTGGCTTCCTTTGTTACCGGGGAAACCCAAGCCTCCCTCCTGTTCTCTGTGG :  72994

    223 : IleIleProSerGluLeuSerMetPheThrGlyTyrLeuSerAsnAsnArgPheTyrP :    242
          :!:   ||||||  !|||.!!:!:|||.!!  !!  |||  !! !..! !!!::    
          Leu***ProSerTrpLeuGlyLeuPheAlaTyrLeuLeuLeuIleGlyTrpTrpValT
  72995 : CTGTAGCCATCTTGGTTGGGTTTATTTGCATATTTGCTCCTGATTGGCTGGTGGGTGT :  73054

    243 : roPro  >>>> Target Intron 11 >>>>  ProProLysGlyLysGluValIl :    251
           !! !            4349 bp             ! !!:!!|||!!.:!!|||||
          rpLeu++                          ++AspSerGluGlyAsnGlnValIl
  73055 : GGCTGgt..........................agGACTCTGAAGGTAACCAAGTCAT :  77430

    252 : eIleHisArg  >>>> Target Intron 12 >>>>  LeuLeuSerMetPheHis :    260
          |! !|||!:!            2518 bp           :!!|||!!!:!!||||||
          eArgHisGln++                          ++IleLeuThrLeuPheHis
  77431 : CAGACACCAAgt..........................agATCTTGACTCTGTTTCAT :  79975

    261 : Pro  >>>> Target Intron 13 >>>>  ArgProPheValLysThrArgPheA :    270
          |||            2758 bp           !:!  !.!.:!!...|||!!! !! 
          Pro++                          ++LysTrpLeuLeuSerThrSerValL
  79976 : CCGgt..........................agAAATGGCTATTGTCTACCAGTGTCT :  82763

    271 : laProGlnGly{A}  >>>> Target Intron 14 >>>>  {la}ValAlaCys{ :    278
           !|||...|||{:}            4240 bp           {!!}!.!  !|||{
          euProSerGly{S}++                          ++{er}AlaLeuCys{
  82764 : TGCCCTCTGGT{T}gt..........................ag{CT}GCCCTGTGT{ :  87027

    279 : L}  >>>> Target Intron 15 >>>>  {eu}ThrAlaIleSerAspPheTyrT :    286
           }            2872 bp           { !}||||||! !  !   !::  !!
          G}++                          ++{ly}ThrAlaSerHisThrTrpProT
  87028 : G}gt..........................ag{GC}ACAGCCAGTCACACATGGCCTT :  89923

    287 : yr  >>>> Target Intron 16 >>>>  ThrValMetPheArgIleHisAlaGl :    295
          ::            2451 bp           ! !! !:!!  !!.!:!:  !! !..
          rp++                          +-LysGlyLeuAspAsnValSerGluAr
  89924 : GGgt..........................acAAGGGCCTGGACAATGTGTCCGAGAG :  92401

    296 : uPheGlnLeuSerGluProProAspPheProPheTrpPheSerProAlaGlnPheThr :    314
          ! ! ! !! !.!!:!!  !|||.!.  !|||||||||   ..!|||::!...|||  !
          gValProSerGlyLys***ProGlnAlaProPheTrpGlyAspProSerSerPheTrp
  92402 : AGTGCCGTCAGGGAAATGACCCCAGGCTCCGTTTTGGGGGGACCCAAGCAGCTTCTGG :  92458

    315 : GlyHis  >>>> Target Intron 17 >>>>  IleIleLeuSerLysAspAlaT :    324
          .!!!!.            9918 bp           ||||||:!!!:!!!.:!!||| 
          SerGln++                          ++IleIleIleAsnAsnAsnAlaG
  92459 : AGCCAGgt..........................agATTATTATTAATAATAATGCCC : 102406

    325 : hrHisValArgAspPheArgLeuPheValPro{As}  >>>> Target Intron 1 :    335
           !||| !!! !! !.!!  !!!!|||  !  !{||}            3518 bp   
          lnHisPheMetAlaLeuLeuPhePheAsnLys{As}++                    
 102407 : AGCATTTTATGGCCCTTTTGTTTTTCAATAAA{AA}gt.................... : 102443

    336 : 8 >>>>  {n}HisArg  >>>> Target Intron 19 >>>>  SerLeuAsnVa :    341
                  {|}||||||            7351 bp           .!!  !|||:!
                ++{n}HisArg++                          ++GlyThrAsnMe
 102444 : ......ag{C}CACCGGgt..........................agGGCACTAACAT : 113326

    342 : lAspMetGlu{Tr}  >>>> Target Intron 20 >>>>  {p}LeuTyrGlyAl :    349
          !:!!! !|||{||}            1377 bp           {|}  !     !||
          tAsnArgGlu{Tr}++                          ++{p}ThrValProAl
 113327 : GAACAGGGAG{TG}gt..........................ag{G}ACAGTACCTGC : 114727

    350 : aSerGluSerSerAsn{Me}  >>>> Target Intron 21 >>>>  {t}GluVa :    357
          |||||||||||||...{  }            713 bp            { }   ||
          aSerGluSerSerGly{Cy}+-                          ++{s}CysVa
 114728 : CTCTGAGAGCAGTGGG{TG}gg..........................ag{C}TGCGT : 115464

    358 : lAspIleGlyTyrIleProGlnMetGluLeuGluAlaThrGlyProSerValProSer :    376
          |! !!  !.!! !:!:|||:!!:!:.!.! !:!!|||:!!|||||||||:!!  !|||
          lAlaThrAlaSerLeuProGluLeuAsnGlnLysAlaSerGlyProSerLeuValSer
 115465 : GGCCACGGCCTCTTTGCCGGAGTTAAACCAGAAGGCCTCGGGCCCCAGTTTGGTATCT : 115521

    377 : Val{Il}  >>>> Target Intron 22 >>>>  {e}LeuAspGluAspGlySer :    384
          |||{  }           19828 bp           { }  !!!:|||.!.  !|||
          Val{Gl}-+                          ++{y}GluGluGluGlnGlnSer
 115522 : GTG{GG}at..........................ag{G}GAGGAGGAGCAGCAAAGC : 135373

    385 : MetIleAspSerHisLeuProSerGlyGluProLeuGlnPheValPheGluGluIle{ :    404
             :!!!  ..!||||||||| !!|||... !!! !! !   |||!!.! !:!!  !{
          SerLeuGlyAspHisLeuProProGlySerSer***LeuThrValLeuGlyGlnGly{
 135374 : TCACTAGGGGACCACCTCCCCCCAGGGTCCTCCTGACTGACAGTTTTGGGGCAGGGC{ : 135433

    405 : Ly}  >>>> Target Intron 23 >>>>  {s}TrpGlnGlnGluLeuSerTrpG :    412
          :!}            6435 bp           {!}  !:!!!:!! !|||! !||||
          Gl}++                          ++{n}ValLysArgAlaLeuPheTrpG
 135434 : CA}gt..........................ag{A}GTGAAACGGGCACTGTTCTGGG : 141892

    413 : luGluAlaAlaArgArgLeuGluVal{A}  >>>> Target Intron 24 >>>>  :    421
          ||..!  !::!|||!.!:!!   |||{!}            3301 bp          
          luSerLeuSerArgHisValThrVal{G}++                          -
 141893 : AGTCACTTAGCAGGCATGTGACCGTG{G}gt..........................t : 145219

    422 :  {la}MetTyrProPheLysLysValSerTyrLeuProPheThrGluAlaPheAspAr :    439
           {.!}.!.    !!.!.!!.|||..!! !  !||||||||| !!!  ||||||! !! 
          +{ly}PheGlyThrLeuAsnLysThrPheSerLeuProPheProGlyAlaPheValPr
 145220 : g{GC}TTTGGGACTCTGAACAAGACGTTCAGCCTTCCCTTTCCTGGTGCCTTCGTCCC : 145274

    440 : gAlaLysAlaGluAsnLys{Le}  >>>> Target Intron 25 >>>>  {u}Va :    447
          !!.!!:!||||||!  !:!{  }            1266 bp           {!}:!
          oGlyArgAlaGluMetArg{Gl}-+                          --{y}Le
 145275 : GGGCAGGGCAGAGATGAGA{GG}ct..........................nn{G}CT : 146564

    448 : lHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{Gl}  >>>> T :    463
          !|||  !:!:|||||||||  !  !! !  ! ! :!!.!!  !   {||}        
          uHisLeuLeuLeuLeuTrpGlnMetGlnPro***LysGlyLeuPro{Gl}++      
 146565 : TCACCTATTGCTCTTGTGGCAGATGCAGCCCTAGAAGGGTCTTCCT{GG}gt...... : 146616

    464 : arget Intron 26 >>>>  {y}SerGlyArgThrLeuArgGluThrValLeuGlu :    474
              2480 bp           {|}||| !!|||  !||| !!|||  !  !|||! !
                              ++{y}SerArgArgLeuLeu***GluGlyArgLeuGly
 146617 : ....................ag{G}AGCAGGAGGCTGCTCTGAGAAGGAAGGCTTGGA : 149125

    475 : SerSerProIleLeuThrLeuLeuAsnGluSer{Ph}  >>>> Target Intron  :    486
          ..!!.!|||! !|||  !  !:!!:!!...|||{  }           14885 bp  
          GluLysProThrLeuCysAlaValHisSerSer{Se}++                   
 149126 : GAGAAACCCACACTGTGTGCTGTGCATTCTTCA{AG}gt................... : 149165

    487 : 27 >>>>  {e}IleSerThrTrpSerLeuValLysGluLeuGluGluLeuGlnAsnA :    502
                   {!}  !|||  !|||:!!  !||||||!!::!!   ...!!!||||||.
                 +-{r}AlaSerLeuTrpAlaGlyValLysAspMetIleSerPheGlnAsnG
 149166 : .......aa{C}GCTTCTCTCTGGGCTGGTGTTAAAGACATGATTAGTTTCCAGAATG : 164094

    503 : snGlnGluAsn{S}  >>>> Target Intron 28 >>>>  {er}SerHisGlnL :    510
          ..   :!!!..{.}           17889 bp           {!!}|||! !||||
          lyPheLysArg{G}++                          ++{ly}SerLeuGlnL
 164095 : GATTCAAAAGA{G}gt..........................ag{GC}TCTCTTCAGA : 182007

    511 : ysLeuAlaGlyLeuHisLeuGluLys{T}  >>>> Target Intron 29 >>>>  :    519
          ||! !:!!  !:!!! !  !|||   {|}            8343 bp          
          ysCysSerThrIleProThrGluPro{T}++                          +
 182008 : AATGTTCAACAATTCCCACTGAGCCC{T}gt..........................a : 190376

    520 :  {yr}SerPheProValGluMetMetIleCysLeuPro  >>>> Target Intron :    531
           {||} !!|||  !|||  !:!:!!:|||..!||||||            1220 bp 
          +{yr}ProPheValValThrValIleIleAlaLeuPro++                  
 190377 : g{AC}CCATTTGTGGTAACAGTAATCATAGCCCTACCGgt.................. : 190415

    532 :  30 >>>>  AsnGlyThrValValHisHisIleAsnAlaAsnTyrPheLeuAspIle :    546
                       |||! !!.!!.!   |||:!!!.!  !|||     !:!!! !  !
                  ++AlaGlyLysAlaAlaAlaHisLeuThrTrpAsnProHisIleAlaTyr
 190416 : ........agGCAGGCAAGGCAGCTGCGCACCTAACCTGGAATCCACACATTGCCTAT : 191678

    547 : ThrSerValLysProGluGluIleGluSerAsnLeuPheSerPheSerSerThrPheG :    566
            !!!!||||||  !.!.  !  !...|||  !|||  !..!   ||||||  !  ! 
          LeuArgValLysLysHisLeuSerSerSerProLeuThrGlnGluSerSerLeuGlyI
 191679 : TTGAGGGTAAAGAAACATCTGTCATCCTCCCCTCTCACTCAGGAATCCTCTCTAGGCA : 191738

    567 : luAspProSerThrAlaThrTyrMetGln :    575
             !!|||!.!|||.!!  !|||   |||
          leTyrProLysThrThrPheTyrAlaGln
 191739 : TTTATCCTAAGACAACATTTTATGCACAA : 191767

vulgar: SPP00000079_2.0 1 575 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 12855 191767 + 119 M 18 54 5 0 2 I 0 2036 3 0 2 M 20 60 S 0 1 5 0 2 I 0 5496 3 0 2 S 1 2 M 17 51 S 0 1 5 0 2 I 0 9023 3 0 2 S 1 2 M 34 102 S 0 2 5 0 2 I 0 3357 3 0 2 S 1 1 M 41 123 S 0 2 5 0 2 I 0 3356 3 0 2 S 1 1 M 8 24 5 0 2 I 0 6311 3 0 2 M 18 54 S 0 1 5 0 2 I 0 11076 3 0 2 S 1 2 M 8 24 S 0 2 5 0 2 I 0 8998 3 0 2 S 1 1 M 11 33 S 0 2 5 0 2 I 0 2960 3 0 2 S 1 1 M 18 54 S 0 2 5 0 2 I 0 6825 3 0 2 S 1 1 M 41 123 5 0 2 I 0 4345 3 0 2 M 11 33 5 0 2 I 0 2514 3 0 2 M 7 21 5 0 2 I 0 2754 3 0 2 M 12 36 S 0 1 5 0 2 I 0 4236 3 0 2 S 1 2 M 3 9 S 0 1 5 0 2 I 0 2868 3 0 2 S 1 2 M 8 24 5 0 2 I 0 2447 3 0 2 M 30 90 5 0 2 I 0 9914 3 0 2 M 18 54 S 0 2 5 0 2 I 0 3514 3 0 2 S 1 1 M 2 6 5 0 2 I 0 7347 3 0 2 M 7 21 S 0 2 5 0 2 I 0 1373 3 0 2 S 1 1 M 9 27 S 0 2 5 0 2 I 0 709 3 0 2 S 1 1 M 22 66 S 0 2 5 0 2 I 0 19824 3 0 2 S 1 1 M 25 75 S 0 2 5 0 2 I 0 6431 3 0 2 S 1 1 M 16 48 S 0 1 5 0 2 I 0 3297 3 0 2 S 1 2 M 24 72 S 0 2 5 0 2 I 0 1262 3 0 2 S 1 1 M 16 48 S 0 2 5 0 2 I 0 2476 3 0 2 S 1 1 M 22 66 S 0 2 5 0 2 I 0 14881 3 0 2 S 1 1 M 19 57 S 0 1 5 0 2 I 0 17885 3 0 2 S 1 2 M 12 36 S 0 1 5 0 2 I 0 8339 3 0 2 S 1 2 M 11 33 5 0 2 I 0 1216 3 0 2 M 45 135
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	12856	191767	119	+	.	gene_id 1 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	12856	12909	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	12856	12909	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	12910	12911	.	+	.	intron_id 1 ; splice_site "CT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	12910	14949	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	14948	14949	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	14950	15010	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	14950	15010	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	15011	15012	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	15011	20510	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	20509	20510	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	20511	20564	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	20511	20564	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	20565	20566	.	+	.	intron_id 3 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	20565	29591	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	29590	29591	.	+	.	intron_id 2 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	29592	29697	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	29592	29697	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	29698	29699	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	29698	33058	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	33057	33058	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	33059	33184	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	33059	33184	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	33185	33186	.	+	.	intron_id 5 ; splice_site "TT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	33185	36544	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	36543	36544	.	+	.	intron_id 4 ; splice_site "AT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	36545	36569	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	36545	36569	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	36570	36571	.	+	.	intron_id 6 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	36570	42884	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	42883	42884	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	42885	42939	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	42885	42939	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	42940	42941	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	42940	54019	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	54018	54019	.	+	.	intron_id 6 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	54020	54047	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	54020	54047	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	54048	54049	.	+	.	intron_id 8 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	54048	63049	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	63048	63049	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	63050	63085	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	63050	63085	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	63086	63087	.	+	.	intron_id 9 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	63086	66049	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	66048	66049	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	66050	66106	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	66050	66106	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	66107	66108	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	66107	72935	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	72934	72935	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	72936	73059	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	72936	73059	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	73060	73061	.	+	.	intron_id 11 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	73060	77408	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	77407	77408	.	+	.	intron_id 10 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	77409	77441	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	77409	77441	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	77442	77443	.	+	.	intron_id 12 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	77442	79959	.	+	.	intron_id 12
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	79958	79959	.	+	.	intron_id 11 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	79960	79980	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	79960	79980	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	79981	79982	.	+	.	intron_id 13 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	79981	82738	.	+	.	intron_id 13
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	82737	82738	.	+	.	intron_id 12 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	82739	82775	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	82739	82775	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	82776	82777	.	+	.	intron_id 14 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	82776	87015	.	+	.	intron_id 14
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	87014	87015	.	+	.	intron_id 13 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	87016	87027	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	87016	87027	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	87028	87029	.	+	.	intron_id 15 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	87028	89899	.	+	.	intron_id 15
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	89898	89899	.	+	.	intron_id 14 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	89900	89925	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	89900	89925	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	89926	89927	.	+	.	intron_id 16 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	89926	92376	.	+	.	intron_id 16
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	92375	92376	.	+	.	intron_id 15 ; splice_site "AC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	92377	92466	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	92377	92466	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	92467	92468	.	+	.	intron_id 17 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	92467	102384	.	+	.	intron_id 17
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	102383	102384	.	+	.	intron_id 16 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	102385	102440	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	102385	102440	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	102441	102442	.	+	.	intron_id 18 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	102441	105958	.	+	.	intron_id 18
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	105957	105958	.	+	.	intron_id 17 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	105959	105965	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	105959	105965	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	105966	105967	.	+	.	intron_id 19 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	105966	113316	.	+	.	intron_id 19
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	113315	113316	.	+	.	intron_id 18 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	113317	113339	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	113317	113339	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	113340	113341	.	+	.	intron_id 20 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	113340	114716	.	+	.	intron_id 20
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	114715	114716	.	+	.	intron_id 19 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	114717	114746	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	114717	114746	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	114747	114748	.	+	.	intron_id 21 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	114747	115459	.	+	.	intron_id 21
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	115458	115459	.	+	.	intron_id 20 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	115460	115528	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	115460	115528	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	115529	115530	.	+	.	intron_id 22 ; splice_site "AT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	115529	135356	.	+	.	intron_id 22
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	135355	135356	.	+	.	intron_id 21 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	135357	135434	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	135357	135434	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	135435	135436	.	+	.	intron_id 23 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	135435	141869	.	+	.	intron_id 23
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	141868	141869	.	+	.	intron_id 22 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	141870	141919	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	141870	141919	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	141920	141921	.	+	.	intron_id 24 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	141920	145220	.	+	.	intron_id 24
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	145219	145220	.	+	.	intron_id 23 ; splice_site "TG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	145221	145296	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	145221	145296	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	145297	145298	.	+	.	intron_id 25 ; splice_site "CT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	145297	146562	.	+	.	intron_id 25
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	146561	146562	.	+	.	intron_id 24 ; splice_site "NN"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	146563	146613	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	146563	146613	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	146614	146615	.	+	.	intron_id 26 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	146614	149093	.	+	.	intron_id 26
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	149092	149093	.	+	.	intron_id 25 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	149094	149162	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	149094	149162	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	149163	149164	.	+	.	intron_id 27 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	149163	164047	.	+	.	intron_id 27
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	164046	164047	.	+	.	intron_id 26 ; splice_site "AA"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	164048	164106	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	164048	164106	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	164107	164108	.	+	.	intron_id 28 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	164107	181995	.	+	.	intron_id 28
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	181994	181995	.	+	.	intron_id 27 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	181996	182034	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	181996	182034	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	182035	182036	.	+	.	intron_id 29 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	182035	190377	.	+	.	intron_id 29
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	190376	190377	.	+	.	intron_id 28 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	190378	190412	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	190378	190412	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	190413	190414	.	+	.	intron_id 30 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	190413	191632	.	+	.	intron_id 30
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	191631	191632	.	+	.	intron_id 29 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	191633	191767	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	191633	191767	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	12856	191767	119	+	.	alignment_id 1 ; Query SPP00000079_2.0 ; Align 12856 2 54 ; Align 14950 20 60 ; Align 20513 41 51 ; Align 29594 59 102 ; Align 33060 94 123 ; Align 36546 136 24 ; Align 42885 144 54 ; Align 54022 163 24 ; Align 63051 172 33 ; Align 66051 184 54 ; Align 72937 203 123 ; Align 77409 244 33 ; Align 79960 255 21 ; Align 82739 262 36 ; Align 87018 275 9 ; Align 89902 279 24 ; Align 92377 287 90 ; Align 102385 317 54 ; Align 105960 336 6 ; Align 113317 338 21 ; Align 114718 346 27 ; Align 115461 356 66 ; Align 135358 379 75 ; Align 141871 405 48 ; Align 145223 422 72 ; Align 146564 447 48 ; Align 149095 464 66 ; Align 164049 487 57 ; Align 181998 507 36 ; Align 190380 520 33 ; Align 191633 531 135
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 116
   Query range: 1 -> 169
  Target range: 87317 -> 181153

      2 : GlyArgAlaArgProGlyGlnArg{G}  >>>> Target Intron 1 >>>>  {l :     10
          |||!!!.!! !!|||||||||..!{|}           13211 bp          {|
          GlySerThrGlyProGlyGlnGlu{G}++                         ++{l
  87318 : GGTAGCACAGGTCCAGGGCAGGAA{G}gt.........................ag{G : 100554

     11 : y}ProProSerPro{G}  >>>> Target Intron 2 >>>>  {ly}ProAlaAl :     18
          |}||||||.!!|||{|}           3651 bp           {||}||||||||
          y}ProProGlyPro{G}+-                         ++{ly}ProAlaAl
 100555 : A}CCCCCGGGGCCT{G}gc.........................ag{GG}CCTGCAGC : 104228

     19 : aGlnProProAlaProPro{A}  >>>> Target Intron 3 >>>>  {rg}Arg :     26
          |! !|||||||||  !  !{ }           12377 bp          {!!}|||
          aProProProAlaGlyGlu{G}+-                         ++{ly}Arg
 104229 : GCCGCCTCCTGCCGGGGAA{G}gc.........................ag{GG}CGT : 116629

     27 : ArgAlaArgSerLeuAlaLeuLeuGlyAlaLeuLeuAlaAlaAlaAlaAlaAlaAlaV :     46
          ! !!.!|||.!!:!!::!! !  !  !|||||||||  !  !:!!|||!.!|||!.!.
          ProGlyArgGlyIleSerGlnThrGlnAlaLeuLeuIleLeuSerAlaGlyAlaGlyT
 116630 : CCTGGGAGAGGAATTAGCCAGACCCAGGCCCTTCTGATCCTCTCAGCTGGTGCAGGCA : 116689

     47 : alArgValCysAlaArgHisAlaGluAlaGlnAlaAlaAlaArg  >>>> Target  :     61
          .!! !..!  !  !!:!!!.:!!.....!|||||||||  ! !!           950
          hrProThrIleArgLysGlnSerSerCysGlnAlaAlaAsnGly++            
 116690 : CTCCTACCATCAGAAAACAGTCGTCTTGCCAAGCTGCTAATGGGgt............ : 116736

     62 : Intron 4 >>>>  GlnGluLeuAlaLeuLysThrLeuGly{T}  >>>> Target :     70
          9 bp           ..!!  ||||||:!!|||!:!  !  !{ }           26
                       ++SerGlyLeuAlaIleLysSerSerThr{G}-+           
 116737 : .............agTCAGGCCTCGCAATTAAAAGCAGTACA{G}tt........... : 126273

     71 :  Intron 5 >>>>  {hr}AspGlyLeuPheLeuPhe{S}  >>>> Target Int :     77
          50 bp           { !}||||||:!!  !|||   {|}           2535 b
                        ++{ly}AspGlyValAlaLeuPro{S}++               
 126274 : ..............ag{GG}GACGGTGTTGCTTTGCCA{A}gt............... : 128944

     78 : ron 6 >>>>  {er}SerLeuAspThrAspGlyAspMetTyrIleSerProGluGlu :     91
          p           {||}|||! !||||||  !  ! !!:!! !   !..!|||! !|||
                    ++{er}SerSerAspThrThrThrHisLeuGluProAspProGlyGlu
 128945 : ..........ag{GC}AGCTCTGACACAACCACACACCTGGAGCCTGACCCTGGGGAA : 131518

     92 : PheLys  >>>> Target Intron 7 >>>>  ProIleAlaGluLysLeuThrGl :    101
            !|||           7108 bp            !!:!::!!.!.!..|||.!!..
          AlaLys++                         ++AlaValSerHisSerLeuAlaSe
 131519 : GCCAAGgt.........................agGCCGTGTCTCACAGCTTGGCGTC : 138656

    102 : ySerCysSerValThrGlnThrGlyValGlnTrpCysSerHisSerSerLeuGlnPro :    120
          !  !|||! !:!!..!...  !|||:!!!  |||   !!!! !|||..!|||:!! !!
          rValCysPheLeuValSerHisGlyLeuLeuTrpThrThrLeuSerGlnLeuLysThr
 138657 : TGTGTGCTTCTTAGTGAGCCATGGCCTCCTCTGGACAACCCTTTCCCAACTGAAAACC : 138713

    121 : {Gl}  >>>> Target Intron 8 >>>>  {n}LeuProTrpLeuAsnUnkSer{ :    129
          {..}           23593 bp          {.}||| !!|||||||||   |||{
          {Se}+-                         ++{r}LeuSerTrpLeuAsnPheSer{
 138714 : {AG}gg.........................ag{T}CTCTCTTGGCTGAATTTTTCT{ : 162333

    130 : Se}  >>>> Target Intron 9 >>>>  {r}CysLeuSerLeuLeuArg{Se}  :    136
          ! }            110 bp           {!}|||  !|||! !|||  !{||} 
          Le}++                         ++{u}CysLysSerHisLeuAla{Se}+
 162334 : TT}gt.........................ag{G}TGCAAGAGCCACCTGGCC{AG}g : 162466

    137 :  >>>> Target Intron 10 >>>>  {r}ThrProAlaAlaSerCys{Gl}  >> :    143
                    14084 bp           {|}||| !!..!  !:!!! !{..}    
          +                          ++{r}ThrSerCys***AlaPhe{Ar}++  
 162467 : t..........................ag{C}ACTTCCTGCTGAGCGTTC{AG}gt.. : 176573

    144 : >> Target Intron 11 >>>>  {u}GluGluGluLeuProProAspProSerGl :    153
                  1965 bp           {!}|||:!!.!.  ! !!  !   ||| !!:!
                                  ++{g}GluLysHisLysSerAsnIleProProLy
 176574 : ........................ag{A}GAGAAACACAAATCTAATATACCTCCAAA : 178564

    154 : uGluThrLeuThrIleGluAla{A}  >>>> Target Intron 12 >>>>  {rg :    161
          !! !|||  !  !:!:||||||{ }            2539 bp           {!!
          sGlyThrAlaGlyLeuGluAla{G}++                          ++{ly
 178565 : AGGAACAGCAGGACTGGAGGCA{G}gt..........................ag{GT : 181128

    162 : }PheGlnProLeuLeuProGluThr :    169
          }.!.|||||||||! !|||   |||
          }LeuGlnProLeuSerProLeuThr
 181129 : }CTGCAGCCTCTGTCTCCCCTCACA : 181153

vulgar: SPP00000079_2.0 1 169 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 87317 181153 + 116 M 8 24 S 0 1 5 0 2 I 0 13207 3 0 2 S 1 2 M 4 12 S 0 1 5 0 2 I 0 3647 3 0 2 S 1 2 M 9 27 S 0 1 5 0 2 I 0 12373 3 0 2 S 1 2 M 35 105 5 0 2 I 0 9505 3 0 2 M 9 27 S 0 1 5 0 2 I 0 2646 3 0 2 S 1 2 M 6 18 S 0 1 5 0 2 I 0 2531 3 0 2 S 1 2 M 16 48 5 0 2 I 0 7104 3 0 2 M 27 81 S 0 2 5 0 2 I 0 23589 3 0 2 S 1 1 M 7 21 S 0 2 5 0 2 I 0 106 3 0 2 S 1 1 M 6 18 S 0 2 5 0 2 I 0 14080 3 0 2 S 1 1 M 6 18 S 0 2 5 0 2 I 0 1961 3 0 2 S 1 1 M 17 51 S 0 1 5 0 2 I 0 2535 3 0 2 S 1 2 M 8 24
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	87318	181153	116	+	.	gene_id 2 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	87318	87342	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	87318	87342	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	87343	87344	.	+	.	intron_id 1 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	87343	100553	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	100552	100553	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	100554	100568	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	100554	100568	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	100569	100570	.	+	.	intron_id 2 ; splice_site "GC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	100569	104219	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	104218	104219	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	104220	104249	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	104220	104249	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	104250	104251	.	+	.	intron_id 3 ; splice_site "GC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	104250	116626	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	116625	116626	.	+	.	intron_id 2 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	116627	116733	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	116627	116733	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	116734	116735	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	116734	126242	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	126241	126242	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	126243	126270	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	126243	126270	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	126271	126272	.	+	.	intron_id 5 ; splice_site "TT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	126271	128920	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	128919	128920	.	+	.	intron_id 4 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	128921	128941	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	128921	128941	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	128942	128943	.	+	.	intron_id 6 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	128942	131476	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	131475	131476	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	131477	131526	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	131477	131526	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	131527	131528	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	131527	138634	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	138633	138634	.	+	.	intron_id 6 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	138635	138717	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	138635	138717	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	138718	138719	.	+	.	intron_id 8 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	138718	162310	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	162309	162310	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	162311	162334	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	162311	162334	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	162335	162336	.	+	.	intron_id 9 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	162335	162444	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	162443	162444	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	162445	162465	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	162445	162465	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	162466	162467	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	162466	176549	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	176548	176549	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	176550	176570	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	176550	176570	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	176571	176572	.	+	.	intron_id 11 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	176571	178535	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	178534	178535	.	+	.	intron_id 10 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	178536	178588	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	178536	178588	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	178589	178590	.	+	.	intron_id 12 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	178589	181127	.	+	.	intron_id 12
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	181126	181127	.	+	.	intron_id 11 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	181128	181153	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	181128	181153	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	87318	181153	116	+	.	alignment_id 2 ; Query SPP00000079_2.0 ; Align 87318 2 24 ; Align 100556 11 12 ; Align 104222 16 27 ; Align 116629 26 105 ; Align 126243 61 27 ; Align 128923 71 18 ; Align 131479 78 48 ; Align 138635 94 81 ; Align 162312 122 21 ; Align 162446 130 18 ; Align 176551 137 18 ; Align 178537 144 51 ; Align 181130 162 24
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 113
   Query range: 148 -> 515
  Target range: 9190 -> 182047

    149 : ProAspProSerGluGluThrLeuThrIleGluAlaArgPheGlnProLeuLeuProG :    168
          |||! !! !||||||!  :!!  !|||   ||||||  !   ::!|||  !:!!|||!
          ProGlyLeuSerGluAlaSerThrThrGlnGluAlaSerGluArgProGlyValProV
   9191 : CCAGGCCTTTCAGAAGCCTCCACCACGCAGGAGGCTTCTGAAAGGCCTGGTGTACCAG :   9248

    169 : luThrMetThr{L}  >>>> Target Intron 1 >>>>  {ys}SerLysAspGl :    176
           !  !!!:  !{|}            706 bp           {||}..!  !!  ||
          alGlyIleGlu{L}++                         ++{ys}GlnProGlyGl
   9249 : TGGGGATCGAA{A}gt.........................ag{AG}CAGCCAGGAGG :   9978

    177 : yPheLeuGlyValSerArgLeuAlaLeu  >>>> Target Intron 2 >>>>  S :    186
          |  !|||.!!:!!|||  !! !:!!|||           2281 bp           .
          yArgLeuSerIleSerValSerSerLeu++                         ++G
   9979 : TCGTCTCAGCATCTCGGTTTCCTCTCTGgt.........................agG :  12289

    187 : erGlyLeuArgAsnTrpThr{Al}  >>>> Target Intron 3 >>>>  {a}Al :    194
          !!..!:!!!:!:!!!::  !{  }            717 bp           {!}.!
          lySerValLysAspTyrGln{Ly}++                         ++{s}Th
  12290 : GATCTGTGAAAGATTACCAA{AA}gt.........................ag{A}AC :  13030

    195 : aAlaSerProSerAlaValPhe{A}  >>>> Target Intron 4 >>>>  {la} :    202
          !! !  !|||:!!|||:!!  !{|}            219 bp           {||}
          rGluLeuProAlaAlaIleArg{A}++                         ++{la}
  13031 : AGAGCTGCCGGCGGCAATCCGC{G}gt.........................ag{CC} :  13274

    203 : ThrArgHisPheGlnProPheLeuProProProGlyGlnGlu{L}  >>>> Target :    217
           !!|||  !  !!:! !!||||||  !  !||||||::!!  { }           16
          ProArgAlaHisArgSerPheLeuGlyCysProGlyArgAla{A}+-           
  13275 : CCGCGCGCTCACCGGTCTTTCCTCGGTTGTCCAGGGAGGGCT{G}gc........... :  13321

    218 :  Intron 5 >>>>  {eu}GlyGluProTrpTrpIleIleProSerGluLeuSerMe :    230
          01 bp           { !}..!.!.|||!    !  !  !||| !!!    ! !!! 
                        ++{la}SerHisProSerLeuProAspProProAlaThrProTh
  13322 : ..............ag{CA}TCCCACCCTTCTCTGCCTGACCCCCCAGCCACCCCCAC :  14958

    231 : tPheThrGlyTyrLeuSerAsnAsnArgPheTyrProProProProLys{Gl}  >>> :    247
           |||  !!.!!  :!!  !  !!:!  !!:!!:!|||||||||! !!!.{||}     
          rPheGlnAla***MetLeuLeuSerValTyrPheProProProGlnAsn{Gl}++   
  14959 : CTTCCAGGCTTGAATGCTACTCAGTGTATATTTTCCCCCGCCTCAGAAT{GG}gt... :  15013

    248 : > Target Intron 6 >>>>  {y}LysGlu  >>>> Target Intron 7 >> :    250
                5687 bp           {|}|||! !           7128 bp       
                                ++{y}LysGly++                       
  15014 : ......................ag{C}AAAGGGgt....................... :  20707

    251 : >>  ValIle{Il}  >>>> Target Intron 8 >>>>  {e}HisArgLeuLeu :    256
              ||||||{! }           1590 bp           {!}|||! !! !  !
            ++ValIle{As}++                         ++{n}HisLeuCysThr
  20708 : ..agGTCATT{AA}gt.........................ag{C}CATCTGTGTACA :  29441

    257 : SerMetPheHisProArgProPhe  >>>> Target Intron 9 >>>>  ValLy :    266
          |||   !::.!.|||  !|||.!.            437 bp           |||||
          SerSerTrpGluProAlaProMet++                         ++ValLy
  29442 : AGCTCTTGGGAGCCAGCACCCATGgt.........................agGTCAA :  29908

    267 : s  >>>> Target Intron 10 >>>>  ThrArgPheAlaProGlnGlyAla{Va :    275
          |            1114 bp           ! !|||  !:!!|||  !|||  !{  
          s++                          ++ArgArgAlaSerProLeuGlyArg{Ar
  29909 : Ggt..........................agAGAAGAGCTTCCCCCTTGGGCAGG{AG :  31049

    276 : }  >>>> Target Intron 11 >>>>  {l}AlaCysLeuThrAlaIleSerAsp :    283
          }           15832 bp           {!}  !  !||||||  !:!!..!..!
          }++                          ++{g}IleValLeuThrIleLeuAspSer
  31050 : }gt..........................ag{A}ATTGTTTTGACTATTTTAGATTCT :  46905

    284 : PheTyrTyrThrValMetPheArgIleHisAlaGluPhe  >>>> Target Intro :    297
          !!.:!!!:!  !:!!!  |||||||||  !  !!  !::           13159 bp
          LeuHisPheTyrIleAsnPheArgIleSerLeuGlyTrp++                 
  46906 : TTGCATTTTTATATAAATTTTAGGATCAGCCTTGGCTGGgt................. :  46949

    298 : n 12 >>>>  GlnLeuSerGluProProAspPheProPheTrpPheSerProAla   :    312
                          !||||||  !  ! !!!:!  !|||!::|||  !  !  !  
                   ++AlaLysSerGluPheTrpHisTyrSerPhePhePheLeuAspTyr++
  46950 : .........agGCCAAGTCCGAGTTCTGGCATTACAGCTTCTTCTTTCTGGACTACgt :  60151

    313 : >>>> Target Intron 13 >>>>  GlnPheThrGlyHisIleIleLeuSerLys :    321
                    1254 bp           ! !|||:!!|||  !  !:!:  ! !!  !
                                    ++ProPheSerGlySerProLeuGlyProLeu
  60152 : ..........................agCCATTCTCCGGGTCTCCACTGGGCCCTCTG :  61432

    322 : AspAlaThrHisValArgAspPheArgLeuPheValPro{A}  >>>> Target In :    335
          |||  !  !...:!!!:!||||||!.!:!!   :!!  !{ }            9410
          AspGlnCysArgIleLysAspPheAsnIleGlyMetAsn{C}++              
  61433 : GATCAGTGTAGGATCAAAGACTTTAATATTGGGATGAAC{T}gt.............. :  61477

    336 : tron 14 >>>>  {sn}HisArgSerLeu{As}  >>>> Target Intron 15  :    340
           bp           { !}   ..!||||||{!!}            2127 bp     
                      ++{ys}LeuGluSerLeu{Ly}++                      
  61478 : ............ag{GT}TTGGAAAGTTTG{AA}gt...................... :  70903

    341 : >>>>  {n}ValAspMetGluTrpLeuTyrGlyAlaSer{G}  >>>> Target In :    351
                {.} !!! !   !!:||||||   |||!.!:!!{!}            5616
              +-{s}PheAlaProAspTrpLeuValGlyValAla{G}++              
  70904 : ....at{A}TTTGCTCCTGATTGGCTGGTGGGTGTGGCT{G}gt.............. :  73062

    352 : tron 16 >>>>  {lu}SerSerAsnMetGluValAspIleGlyTyrIleProGln{ :    365
           bp           {  }|||!!!:::!  :!!:!! !!!  |||||||||! !|||{
                      ++{ly}SerThrSerThrGlnIleHisThrGlyTyrIleLeuGln{
  73063 : ............ag{GT}AGTACTTCAACCCAAATACACACGGGATACATACTGCAG{ :  78717

    366 : M}  >>>> Target Intron 17 >>>>  {et}GluLeuGlu  >>>> Target :    369
           }            1340 bp           {  }||||||:!!           11
          A}+-                          ++{sp}GluLeuGln++           
  78718 : G}ga..........................ag{AT}GAGCTGCAGgt........... :  80071

    370 :  Intron 18 >>>>  AlaThrGlyProSerValProSerValIleLeuAspGluAs :    382
          999 bp           |||  !||||||  !:!!  !|||  !! !||||||  !..
                         ++AlaTrpGlyProLeuIleLysSerAsnArgLeuAspTrpSe
  80072 : ...............agGCTTGGGGTCCTCTCATTAAGTCAAATAGACTAGACTGGTC :  92107

    383 : pGlySerMet{Il}  >>>> Target Intron 19 >>>>  {e}AspSerHisLe :    390
          !|||..!   {! }           18951 bp           {!}   ! !! !! 
          rGlyGluPro{Se}++                          ++{r}ProMetLeuTy
  92108 : TGGGGAGCCA{AG}gt..........................ag{T}CCGATGCTCTA : 111082

    391 : uProSerGlyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGln  >>>> :    408
          !|||  !..!:!! !!  ! !!  !||||||!   ! .!!  !|||  !|||      
          rProLeuAsnGlnThrSer***AlaValPheValTyrPheLeuTrpAlaGln++    
 111083 : TCCACTGAACCAAACTAGTTAGGCTGTTTTTGTTTATTTTTTATGGGCACAGgt.... : 111138

    409 :  Target Intron 20 >>>>  GluLeuSerTrpGluGlu{A}  >>>> Target :    414
               15259 bp           |||  !:!!||||||  !{!}            4
                                ++GluAlaAlaTrpGlu***{G}++           
 111139 : ......................agGAGGCTGCTTGGGAGTGA{G}gt........... : 126416

    415 :  Intron 21 >>>>  {la}AlaArgArgLeuGluValAlaMetTyrPro  >>>>  :    425
          130 bp           {.!}:!!|||||||||   |||  !   !:!|||       
                         ++{ly}SerArgArgLeuProValLeuAlaPhePro+-     
 126417 : ...............ag{GG}TCCCGACGACTCCCCGTGCTCGCCTTCCCTgc..... : 130578

    426 : Target Intron 22 >>>>  PheLysLysValSerTyrLeuProPheThrGluAl :    436
               1319 bp              |||:!!:!!!.!|||:!!  !.!.  !|||..
                               -+LysLysGlnIleLysTyrIleTyrMetGluGluCy
 130579 : .....................tgAAAAAACAAATTAAATATATATATATGGAGGAGTG : 131928

    437 : aPheAspArgAlaLys{A}  >>>> Target Intron 23 >>>>  {la}GluAs :    444
          !     !||||||...{|}            831 bp            {||}...!.
          sGlyArgArgAlaSer{A}++                          ++{la}SerAr
 131929 : CGGACGCAGGGCCTCC{G}gt..........................ag{CA}TCTAG : 132783

    445 : nLysLeuValHisSerIleLeu<->LeuTrpGlyAla  >>>> Target Intron  :    456
          .|||  !! !||||||.!!! !   |||||||||  !            6636 bp  
          gLysArgGlyHisSerPheTrpAspLeuTrpGlyGln++                   
 132784 : AAAGAGAGGACACTCGTTTTGGGACCTTTGGGGGCAGgt................... : 132824

    457 : 24 >>>>  LeuAsp{A}  >>>> Target Intron 25 >>>>  {sp}GlnSer :    460
                   |||!!:{!}           14503 bp           { !}!:!|||
                 ++LeuGlu{G}++                          +-{ly}ArgSer
 132825 : .......agCTCGAG{G}gt..........................aa{GC}CGGTCC : 153973

    461 : CysUnkGlySer{G}  >>>> Target Intron 26 >>>>  {ly}{Ar}  >>> :    466
          |||...!.!:!!{|}            5291 bp           {||}{||}     
          CysSerAlaAla{G}++                          ++{ly}{Ar}++   
 153974 : TGCTCTGCGGCA{G}gt..........................ag{GA}{AG}gt... : 159286

    467 : > Target Intron 27 >>>>  {g}ThrLeuArg{G}  >>>> Target Intr :    470
                14269 bp           {|}! !:!!|||{.}            2108 b
                                 ++{g}IleValArg{A}++                
 159287 : .......................ag{A}ATTGTGAGA{A}gt................ : 173566

    471 : on 28 >>>>  {lu}ThrValLeuGluSerSerProIleLeuThrLeuLeuAsnGlu :    484
          p           {!.}! !||||||:!!!!!  !|||! !|||  !|||  !!!.|||
                    ++{sn}LysValLeuGlnArgHisProThrLeuTrpLeuSerLysGlu
 173567 : ..........ag{AT}AAAGTACTTCAGAGGCACCCAACTCTCTGGTTAAGTAAAGAG : 175713

    485 : Ser  >>>> Target Intron 29 >>>>  PheIleSerThrTrpSerLeuValL :    494
          !:!            2560 bp             !:!!!.!|||   :!!  !:!!|
          Asn++                          ++HisLeuLysThrAspAlaLysLeuL
 175714 : AATgt..........................agCACCTCAAGACAGATGCCAAATTGA : 178303

    495 : ysGluLeuGlu{Gl}  >>>> Target Intron 30 >>>>  {u}LeuGlnAsnA :    502
          ||  !|||.!.{! }            3679 bp           {!}|||...:::.
          ysTrpLeuAsn{Gl}++                          ++{y}LeuSerSerG
 178304 : AGTGGTTAAAT{GG}gt..........................ag{G}CTCTCTTCAG : 182006

    503 : snGlnGluAsnSerSerHisGlnLysLeuAlaGlyLeuHis :    515
          !...!   |||!:!||||||  !   |||  !|||! !|||
          luMetPheAsnAsnSerHis***AlaLeuTyrGlySerHis
 182007 : AAATGTTCAACAATTCCCACTGAGCCCTGTATGGTTCTCAT : 182047

vulgar: SPP00000079_2.0 148 515 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 9190 182047 + 113 M 23 69 S 0 1 5 0 2 I 0 702 3 0 2 S 1 2 M 13 39 5 0 2 I 0 2277 3 0 2 M 7 21 S 0 2 5 0 2 I 0 713 3 0 2 S 1 1 M 8 24 S 0 1 5 0 2 I 0 215 3 0 2 S 1 2 M 14 42 S 0 1 5 0 2 I 0 1597 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 5683 3 0 2 S 1 1 M 2 6 5 0 2 I 0 7124 3 0 2 M 2 6 S 0 2 5 0 2 I 0 1586 3 0 2 S 1 1 M 12 36 5 0 2 I 0 433 3 0 2 M 2 6 5 0 2 I 0 1110 3 0 2 M 8 24 S 0 2 5 0 2 I 0 15828 3 0 2 S 1 1 M 21 63 5 0 2 I 0 13155 3 0 2 M 15 45 5 0 2 I 0 1250 3 0 2 M 23 69 S 0 1 5 0 2 I 0 9406 3 0 2 S 1 2 M 4 12 S 0 2 5 0 2 I 0 2123 3 0 2 S 1 1 M 10 30 S 0 1 5 0 2 I 0 5612 3 0 2 S 1 2 M 13 39 S 0 1 5 0 2 I 0 1336 3 0 2 S 1 2 M 3 9 5 0 2 I 0 11995 3 0 2 M 17 51 S 0 2 5 0 2 I 0 18947 3 0 2 S 1 1 M 21 63 5 0 2 I 0 15255 3 0 2 M 6 18 S 0 1 5 0 2 I 0 4126 3 0 2 S 1 2 M 10 30 5 0 2 I 0 1315 3 0 2 M 17 51 S 0 1 5 0 2 I 0 827 3 0 2 S 1 2 M 9 27 G 0 3 M 4 12 5 0 2 I 0 6632 3 0 2 M 2 6 S 0 1 5 0 2 I 0 14499 3 0 2 S 1 2 M 6 18 S 0 1 5 0 2 I 0 5287 3 0 2 S 1 4 5 0 2 I 0 14265 3 0 2 S 1 1 M 3 9 S 0 1 5 0 2 I 0 2104 3 0 2 S 1 2 M 15 45 5 0 2 I 0 2556 3 0 2 M 12 36 S 0 2 5 0 2 I 0 3675 3 0 2 S 1 1 M 17 51
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	9191	182047	113	+	.	gene_id 3 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	9191	9260	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	9191	9260	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	9261	9262	.	+	.	intron_id 1 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	9261	9966	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	9965	9966	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	9967	10007	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	9967	10007	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	10008	10009	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	10008	12288	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	12287	12288	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	12289	12311	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	12289	12311	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	12312	12313	.	+	.	intron_id 3 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	12312	13028	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	13027	13028	.	+	.	intron_id 2 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	13029	13054	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	13029	13054	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	13055	13056	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	13055	13273	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	13272	13273	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	13274	13318	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	13274	13318	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	13319	13320	.	+	.	intron_id 5 ; splice_site "GC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	13319	14919	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	14918	14919	.	+	.	intron_id 4 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	14920	15010	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	14920	15010	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	15011	15012	.	+	.	intron_id 6 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	15011	20697	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	20696	20697	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	20698	20704	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	20698	20704	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	20705	20706	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	20705	27832	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	27831	27832	.	+	.	intron_id 6 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	27833	27840	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	27833	27840	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	27841	27842	.	+	.	intron_id 8 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	27841	29430	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	29429	29430	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	29431	29467	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	29431	29467	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	29468	29469	.	+	.	intron_id 9 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	29468	29904	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	29903	29904	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	29905	29910	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	29905	29910	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	29911	29912	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	29911	31024	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	31023	31024	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	31025	31050	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	31025	31050	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	31051	31052	.	+	.	intron_id 11 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	31051	46882	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	46881	46882	.	+	.	intron_id 10 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	46883	46946	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	46883	46946	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	46947	46948	.	+	.	intron_id 12 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	46947	60105	.	+	.	intron_id 12
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	60104	60105	.	+	.	intron_id 11 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	60106	60150	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	60106	60150	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	60151	60152	.	+	.	intron_id 13 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	60151	61404	.	+	.	intron_id 13
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	61403	61404	.	+	.	intron_id 12 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	61405	61474	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	61405	61474	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	61475	61476	.	+	.	intron_id 14 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	61475	70884	.	+	.	intron_id 14
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	70883	70884	.	+	.	intron_id 13 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	70885	70900	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	70885	70900	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	70901	70902	.	+	.	intron_id 15 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	70901	73027	.	+	.	intron_id 15
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	73026	73027	.	+	.	intron_id 14 ; splice_site "AT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	73028	73059	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	73028	73059	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	73060	73061	.	+	.	intron_id 16 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	73060	78675	.	+	.	intron_id 16
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	78674	78675	.	+	.	intron_id 15 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	78676	78717	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	78676	78717	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	78718	78719	.	+	.	intron_id 17 ; splice_site "GA"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	78718	80057	.	+	.	intron_id 17
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	80056	80057	.	+	.	intron_id 16 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	80058	80068	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	80058	80068	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	80069	80070	.	+	.	intron_id 18 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	80069	92067	.	+	.	intron_id 18
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	92066	92067	.	+	.	intron_id 17 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	92068	92120	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	92068	92120	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	92121	92122	.	+	.	intron_id 19 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	92121	111071	.	+	.	intron_id 19
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	111070	111071	.	+	.	intron_id 18 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	111072	111135	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	111072	111135	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	111136	111137	.	+	.	intron_id 20 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	111136	126394	.	+	.	intron_id 20
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	126393	126394	.	+	.	intron_id 19 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	126395	126413	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	126395	126413	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	126414	126415	.	+	.	intron_id 21 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	126414	130543	.	+	.	intron_id 21
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	130542	130543	.	+	.	intron_id 20 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	130544	130575	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	130544	130575	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	130576	130577	.	+	.	intron_id 22 ; splice_site "GC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	130576	131894	.	+	.	intron_id 22
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	131893	131894	.	+	.	intron_id 21 ; splice_site "TG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	131895	131946	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	131895	131946	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	131947	131948	.	+	.	intron_id 23 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	131947	132777	.	+	.	intron_id 23
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	132776	132777	.	+	.	intron_id 22 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	132778	132821	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	132778	132821	.	+	.	insertions 3 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	132822	132823	.	+	.	intron_id 24 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	132822	139457	.	+	.	intron_id 24
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	139456	139457	.	+	.	intron_id 23 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	139458	139464	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	139458	139464	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	139465	139466	.	+	.	intron_id 25 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	139465	153967	.	+	.	intron_id 25
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	153966	153967	.	+	.	intron_id 24 ; splice_site "AA"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	153968	153988	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	153968	153988	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	153989	153990	.	+	.	intron_id 26 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	153989	159279	.	+	.	intron_id 26
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	159278	159279	.	+	.	intron_id 25 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	159280	159283	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	159280	159283	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	159284	159285	.	+	.	intron_id 27 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	159284	173552	.	+	.	intron_id 27
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	173551	173552	.	+	.	intron_id 26 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	173553	173563	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	173553	173563	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	173564	173565	.	+	.	intron_id 28 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	173564	175671	.	+	.	intron_id 28
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	175670	175671	.	+	.	intron_id 27 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	175672	175718	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	175672	175718	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	175719	175720	.	+	.	intron_id 29 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	175719	178278	.	+	.	intron_id 29
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	178277	178278	.	+	.	intron_id 28 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	178279	178316	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	178279	178316	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	178317	178318	.	+	.	intron_id 30 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	178317	181995	.	+	.	intron_id 30
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	181994	181995	.	+	.	intron_id 29 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	181996	182047	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	181996	182047	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	9191	182047	113	+	.	alignment_id 3 ; Query SPP00000079_2.0 ; Align 9191 149 69 ; Align 9969 173 39 ; Align 12289 186 21 ; Align 13030 194 24 ; Align 13276 203 42 ; Align 14922 218 87 ; Align 20699 248 6 ; Align 27833 250 6 ; Align 29432 253 36 ; Align 29905 265 6 ; Align 31025 267 24 ; Align 46884 276 63 ; Align 60106 297 45 ; Align 61405 312 69 ; Align 70887 336 12 ; Align 73029 341 30 ; Align 78678 352 39 ; Align 80060 366 9 ; Align 92068 369 51 ; Align 111073 387 63 ; Align 126395 408 18 ; Align 130546 415 30 ; Align 131895 425 51 ; Align 132780 443 27 ; Align 132810 452 12 ; Align 139458 456 6 ; Align 153970 459 18 ; Align 173554 467 9 ; Align 175674 471 45 ; Align 178279 486 36 ; Align 181997 499 51
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 112
   Query range: 1 -> 461
  Target range: 9146 -> 187346

      2 : GlyArgAlaArgProGlyGlnArgGlyProProSerProGlyProAlaAlaGlnProP :     21
          |||! !:!!!:! !!|||:!!! !||| !!  ! !!! !|||! !  !|||   ! ! 
          GlyProSerLysAlaGlyGluLeuGlyAlaCysProLeuGlyHisGlnAlaPheGlnL
   9147 : GGACCATCAAAAGCGGGGGAGCTGGGTGCCTGTCCCCTCGGGCACCAGGCCTTTCAGA :   9204

     22 : roAlaProProArgArgArgAlaArgSerLeuAlaLeuLeu{Gl}  >>>> Target :     35
           ! !!|||||||||||||||  !! !!.!  !  !:!!! !{  }           37
          ysProProProArgArgArgLeuLeuLysGlyLeuValTyr{Gl}++           
   9205 : AGCCTCCACCACGCAGGAGGCTTCTGAAAGGCCTGGTGTAC{CA}gt........... :   9250

     36 :  Intron 1 >>>>  {y}AlaLeuLeuAlaAlaAlaAlaAlaAlaAlaValArgVal :     48
          81 bp           {!}.!!  !||| !!||||||  !  !!.!!.!! !  !:!!
                        ++{n}ThrGluLeuProAlaAlaIleArgGlyGlyAspAlaIle
   9251 : ..............ag{A}ACAGAGCTGCCGGCGGCAATCCGCGGTGGGGACGCCATT :  13066

     49 : CysAlaArgHisAlaGlu<->AlaGlnAlaAlaAlaArgGlnGluLeuAlaLeuLysT :     67
          |||!.!|||  !|||..!   !.!:!!! ! !!  ! !!   !  :!!|||  !:!!.
          CysValArgAlaAlaSerGlyGlyGluGluProIleGlyGlyGlyValAlaGlyGluA
  13067 : TGTGTTCGCGCCGCGTCGGGCGGGGAAGAGCCAATCGGAGGCGGTGTCGCTGGGGAAG :  13126

     68 : hrLeuGlyThrAspGlyLeu{Ph}  >>>> Target Intron 2 >>>>  {e}Le :     75
          !!  !|||.!!:!!||||||{  }           4454 bp           {!}:!
          laAlaGlyAlaAsnGlyLeu{Gl}++                         ++{y}Il
  13127 : CGGCAGGTGCCAACGGCCTC{GG}gt.........................ag{C}AT :  17604

     76 : uPheSerSerLeuAspThrAsp{Gl}  >>>> Target Intron 3 >>>>  {y} :     83
          !.!.! !|||!!!!!:! !   {..}           5349 bp           {!}
          eIleLeuSerPheGluIleArg{As}++                         ++{n}
  17605 : TATATTAAGTTTTGAAATCAGG{AA}gt.........................ag{T} :  22979

     84 : AspMetTyrIleSerProGluGluPheLysProIleAlaGluLysLeuThrGlySerC :    103
          |||        !:!!||||||..!.!.! !|||  !!.!!!:...! ! !! !!..!.
          AspCysGlyAlaAlaProGluArgLeuThrProHisGlyAspSerCysProArgAspA
  22980 : GACTGTGGGGCCGCGCCAGAGAGGCTAACACCCCACGGAGACTCCTGCCCTCGCGATG :  23037

    104 : ysSerValThrGlnThrGlyValGlnTrpCys{Se}  >>>> Target Intron 4 :    114
          ...!!  !  !|||  !|||  !||||||  !{.!}           37899 bp   
          laGlyArgGlyGlnLeuGlyTrpGlnTrpVal{Gl}++                    
  23038 : CAGGGCGCGGGCAGCTAGGGTGGCAGTGGGTT{GG}gt.................... :  23074

    115 :  >>>>  {r}HisSerSerLeuGlnProGlnLeuProTrpLeuAsnUnkSerSerCys :    130
                 {!}   !.!..!:!!:!!  !  !|||||||||!!!  !... !!  !|||
               ++{y}GlyLysGluIleLysMetTrpLeuProTrpPheAlaSerProHisCys
  23075 : .....ag{A}GGGAAAGAGATAAAGATGTGGCTACCCTGGTTTGCCTCCCCACATTGC :  61017

    131 : LeuSerLeuLeu  >>>> Target Intron 5 >>>>  ArgSerThrProAlaAl :    140
          |||||||||! !            703 bp            !!..! !!  !|||  
          LeuSerLeuGln++                         ++GlyAspProTrpAlaAr
  61018 : CTCTCACTACAGgt.........................agGGAGACCCATGGGCCCG :  61750

    141 : aSer{Cy}  >>>> Target Intron 6 >>>>  {s}GluGluGluGluLeuPro :    148
          !|||{!!}           18737 bp          { }..!! !:!!.!.||||||
          gSer{Tr}++                         ++{p}ArgAlaGlnHisLeuPro
  61751 : CTCA{TG}gt.........................ag{G}AGAGCACAGCACCTCCCA :  80511

    149 : ProAspPro{S}  >>>> Target Intron 7 >>>>  {er}GluGluThrLeuT :    157
          |||!  |||{!}           4893 bp           {!!}..!!  |||||| 
          ProAlaPro{T}++                         ++{rp}ArgGlyThrLeuT
  80512 : CCCGCACCC{T}gt.........................ag{GG}AGGGGCACCCTGT :  85431

    158 : hrIleGluAlaArgPheGlnProLeu  >>>> Target Intron 8 >>>>  Leu :    166
           !  !|||!.!!:!! !|||! !! !           3860 bp           :!!
          rpAlaGluValLysSerGlnLeu***++                         ++Val
  85432 : GGGCAGAGGTCAAGTCTCAACTATAAgt.........................agGTC :  89318

    167 : ProGluThrMetThrLysSerLysAspGlyPheLeuGlyValSerArgLeuAlaLeuS :    186
           !!!  ..!  !.!!   ||| ! |||  !  !!!!|||:!! !! !!|||:!!||| 
          SerValValSerAlaLeuSerAspAspProThrPheGlyIleArgGlyLeuSerLeuL
  89319 : TCCGTCGTGTCGGCTCTTAGTGACGATCCGACCTTTGGAATCCGAGGCCTGTCGCTGC :  89378

    187 : erGlyLeuArgAsnTrpThrAlaAlaAlaSerProSer{A}  >>>> Target Int :    199
           !|||! !!:!   |||  !..!  !  !|||||| !!{ }           1930 b
          euGlyProGlnValTrpTrpCysLeuLeuSerProPro{A}++               
  89379 : TGGGCCCCCAAGTATGGTGGTGTCTACTGTCCCCACCC{C}gt............... :  89420

    200 : ron 9 >>>>  {la}Val{Ph}  >>>> Target Intron 10 >>>>  {e}Al :    202
          p           { !}:!!{! }            3618 bp           { }||
                    ++{rg}Leu{**}++                          ++{*}Al
  89421 : ..........ag{GC}TTG{TG}gt..........................ag{A}GC :  94974

    203 : aThrArgHisPheGlnProPheLeuProProProGly{G}  >>>> Target Intr :    215
          |  !  !! !! !||||||||||||! !|||||||||{ }            4142 b
          aGlnAlaLeuSerGlnProPheLeuLeuProProGly{G}++                
  94975 : ACAGGCGCTTTCCCAGCCATTTCTCCTCCCTCCGGGC{G}gt................ :  95016

    216 : on 11 >>>>  {ln}GluLeuGlyGluProTrpTrpIleIleProSerGluLeuSer :    229
          p           { !}...||||||.!.||| ! |||:!!  !  !|||...||||||
                    ++{ly}ArgLeuGlyHisProGlyTrpValProGlySerArgLeuSer
  95017 : ..........ag{GG}CGCCTGGGCCACCCTGGCTGGGTACCCGGCTCACGTCTATCC :  99197

    230 : Met{Ph}  >>>> Target Intron 12 >>>>  {e}ThrGlyTyrLeuSerAsn :    237
          !!:{  }           25458 bp           { }.!!! !  !|||! !|||
          Ile{Ar}-+                          +-{g}AlaAspAlaLeuMetAsn
  99198 : ATC{CG}at..........................ac{A}GCAGACGCCCTAATGAAT : 124679

    238 : AsnArgPhe  >>>> Target Intron 13 >>>>  TyrProProProProLysG :    247
          .!.|||               6229 bp             !||||||||||||   |
          GluArgLys++                          +-ValProProProProAlaG
 124680 : GAAAGGAAGgt..........................acGTCCCCCCGCCTCCGGCTG : 130938

    248 : lyLysGluValIleIleHisArgLeuLeuSerMetPheHisProArgProPheValLy :    266
          ||........!!  :!!   ! !|||||||||! !   ...|||! !! !! !  !  
          lySerSerThrArgValThrProLeuLeuSerArgGluArgProThrLeuCysGlnAl
 130939 : GCTCCTCTACGAGGGTAACGCCCCTGCTTAGTAGGGAAAGACCTACTCTGTGCCAGGC : 130995

    267 : sThrArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaIleSerAsp{P}  > :    284
           .!!|||  !..!|||:!! !!  !  !  !   :!!:!!!.!! ! !!  !{|}   
          aAlaArgHisCysProLysCysPheSerHisThrIleSerValAsnProPro{P}+- 
 130996 : TGCCAGGCACTGTCCTAAATGCTTTAGCCACACAATCTCAGTTAATCCCCCT{T}gg. : 131052

    285 : >>> Target Intron 14 >>>>  {he}TyrTyrThrValMetPheArgIleHis :    293
                   3957 bp           {||}  !!:!! !|||        !:!:|||
                                   ++{he}LeuPheLysValHisGluPheValHis
 131053 : .........................ag{TT}CTTTTCAAGGTGCATGAATTCGTGCAC : 135033

    294 : AlaGluPheGlnLeuSer  >>>> Target Intron 15 >>>>  GluProProA :    303
            !!  ! !...:!!! !            347 bp            !  |||||||
          TrpAlaSerSerIleTyr++                          ++GlyProProA
 135034 : TGGGCCTCTAGTATATATgt..........................agGGTCCTCCTG : 135410

    304 : spPheProPheTrpPheSerProAlaGlnPheThr{Gl}  >>>> Target Intro :    315
          ||!  ! !||||||  !!!! !!::!     !:!!{ !}            7328 bp
          sp***GlnPheTrpGlyArgAlaSerAlaHisSer{Tr}-+                 
 135411 : ACTGACAGTTTTGGGGCAGGGCCAGTGCCCACTCC{TG}ct................. : 135450

    316 : n 16 >>>>  {y}HisIleIleLeuSerLysAspAlaThrHisValArg  >>>> T :    328
                     {!}|||:!!:!:! !.!!|||     !|||.!.  !|||        
                   ++{p}HisLeuLeuCysGlyLys***ArgThrGluArgArg++      
 135451 : .........ag{G}CACCTTCTGTGTGGGAAATGAAGGACTGAGAGGAGGgt...... : 142815

    329 : arget Intron 17 >>>>  AspPheArgLeuPheValProAsnHisArgSerLeu :    339
              3315 bp           |||.!!  !||| ! ! !|||:!!     ! !!|||
                              ++AspLeuSerLeuValGluProAspGlySerProLeu
 142816 : ....................agGACCTCTCACTCGTGGAGCCTGATGGATCCCCCCTA : 146161

    340 : AsnVal  >>>> Target Intron 18 >>>>  AspMetGluTrpLeuTyrGlyA :    349
          ::!|||            682 bp            !!::!:||| ! :!! ! |||!
          SerVal++                          +-GluValGluGlyValLysGlyV
 146162 : TCTGTTgt..........................atGAGGTAGAGGGTGTCAAGGGAG : 146873

    350 : laSerGluSerSerAsnMetGluValAspIleGlyTyrIleProGlnMet{G}  >>> :    366
          .!!:!!!:.!! !!  !   |||!.!..!  !.!!     !  !!:!! !{.}     
          alAsnAspGlyArgProAlaGluAlaSerCysSerThrGluAspArgArg{A}++   
 146874 : TCAATGACGGTCGCCCCGCTGAGGCCTCCTGCAGCACAGAAGATCGAAGG{C}gt... : 146927

    367 : > Target Intron 19 >>>>  {lu}LeuGluAlaThrGlyProSerValProSe :    376
                13922 bp           {..}||||||  !  !|||  !..!:!!|||..
                                 ++{rg}LeuGluLysGlnGlyValGluIleProGl
 146928 : .......................ag{GC}TTGGAGAAACAAGGGGTTGAGATCCCCCA : 160876

    377 : rValIleLeuAspGluAspGlySerMetIleAspSerHisLeuProSerGlyGluPro :    395
          !  !||||||  !:!!  !||||||   :!!.!.:!!.!.:!!||| !!  !.!.  !
          nGlnIleLeuThrGlnProGlySerSerLeuGlnAlaGluValProProLeuHisArg
 160877 : GCAGATTCTGACCCAGCCTGGGTCCTCACTCCAGGCTGAAGTTCCGCCCCTCCACAGA : 160933

    396 : LeuGlnPheValPhe{G}  >>>> Target Intron 20 >>>>  {lu}GluIle :    403
            !   |||  !.!.{|}            6106 bp           {||}  !! !
          AspAlaPheHisIle{G}-+                          -+{lu}ProAsn
 160934 : GATGCCTTCCATATA{G}ct..........................tg{AG}CCAAAC : 167063

    404 : LysTrpGlnGlnGluLeuSerTrpGluGluAlaAla{Ar}  >>>> Target Intr :    416
          ::!!::|||! !|||:!!|||!::  !:!!  !  !{||}            6011 b
          ArgPheGlnLeuGluValSerTyrThrGlnLysIle{Ar}++                
 167064 : CGGTTTCAGCTGGAAGTGTCTTATACACAGAAAATA{CG}gt................ : 167106

    417 : on 21 >>>>  {g}ArgLeuGluValAlaMetTyrProPheLysLysValSerTyrL :    431
          p           {|}  !|||...|||  !:!:!:!  !  !!:!|||  !  !   !
                    ++{g}SerLeuSerValLeuLeuPheGluSerArgLysTyrHisLeuG
 167107 : ..........ag{G}TCCCTGAGTGTCCTTCTCTTTGAGAGCAGGAAATATCACCTAC : 173158

    432 : euProPheThrGluAlaPheAspArgAlaLys{A}  >>>> Target Intron 22 :    442
           !|||    !!.!.  !.!!   !.!  !:!!{ }            1797 bp    
          lnProLysProHisGlnLeuArgAsnAsnGln{A}+-                     
 173159 : AACCCAAGCCTCACCAGCTTAGAAATAACCAA{A}gc..................... : 173194

    443 :  >>>>  {la}GluAsnLysLeuValHisSerIleLeuLeuTrp  >>>> Target  :    454
                 { !}!!:  ! ! |||:!!|||:!!:!:  !||||||           115
               ++{rg}AspLeuHisLeuLeuHisAlaLeuGlyLeuTrp++            
 173195 : .....ag{GA}GACCTTCACCTCCTTCATGCGTTGGGGCTGTGGgt............ : 175026

    455 : Intron 23 >>>>    >>>> Target Intron 24 >>>>  GlyAlaLeuAsp :    457
          99 bp                       700 bp            |||  !!!!! !
                        ++++                          ++GlyGlnPheAla
 175027 : ..............aggt..........................agGGTCAGTTTGCT : 187332

    458 : AspGlnSerCys :    461
          |||...!:!|||
          AspSerAsnCys
 187333 : GATTCTAACTGC : 187346

vulgar: SPP00000079_2.0 1 461 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 9146 187346 + 112 M 33 99 S 0 2 5 0 2 I 0 3777 3 0 2 S 1 1 M 19 57 G 0 3 M 19 57 S 0 2 5 0 2 I 0 4450 3 0 2 S 1 1 M 8 24 S 0 2 5 0 2 I 0 5345 3 0 2 S 1 1 M 30 90 S 0 2 5 0 2 I 0 37895 3 0 2 S 1 1 M 20 60 5 0 2 I 0 699 3 0 2 M 7 21 S 0 2 5 0 2 I 0 18733 3 0 2 S 1 1 M 9 27 S 0 1 5 0 2 I 0 4889 3 0 2 S 1 2 M 13 39 5 0 2 I 0 3856 3 0 2 M 33 99 S 0 1 5 0 2 I 0 1926 3 0 2 S 1 2 M 1 3 S 0 2 5 0 2 I 0 3614 3 0 2 S 1 1 M 13 39 S 0 1 5 0 2 I 0 4138 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 25454 3 0 2 S 1 1 M 9 27 5 0 2 I 0 6225 3 0 2 M 43 129 S 0 1 5 0 2 I 0 3953 3 0 2 S 1 2 M 15 45 5 0 2 I 0 343 3 0 2 M 15 45 S 0 2 5 0 2 I 0 7324 3 0 2 S 1 1 M 12 36 5 0 2 I 0 3311 3 0 2 M 14 42 5 0 2 I 0 678 3 0 2 M 24 72 S 0 1 5 0 2 I 0 13918 3 0 2 S 1 2 M 34 102 S 0 1 5 0 2 I 0 6102 3 0 2 S 1 2 M 14 42 S 0 2 5 0 2 I 0 6007 3 0 2 S 1 1 M 25 75 S 0 1 5 0 2 I 0 1793 3 0 2 S 1 2 M 11 33 5 0 2 I 0 11595 3 0 2 5 0 2 I 0 696 3 0 2 M 8 24
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	9147	187346	112	+	.	gene_id 4 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	9147	9247	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	9147	9247	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	9248	9249	.	+	.	intron_id 1 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	9248	13028	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	13027	13028	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	13029	13148	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	13029	13148	.	+	.	insertions 3 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	13149	13150	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	13149	17602	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	17601	17602	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	17603	17629	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	17603	17629	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	17630	17631	.	+	.	intron_id 3 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	17630	22978	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	22977	22978	.	+	.	intron_id 2 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	22979	23071	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	22979	23071	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	23072	23073	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	23072	60970	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	60969	60970	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	60971	61031	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	60971	61031	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	61032	61033	.	+	.	intron_id 5 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	61032	61734	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	61733	61734	.	+	.	intron_id 4 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	61735	61757	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	61735	61757	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	61758	61759	.	+	.	intron_id 6 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	61758	80494	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	80493	80494	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	80495	80523	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	80495	80523	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	80524	80525	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	80524	85416	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	85415	85416	.	+	.	intron_id 6 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	85417	85457	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	85417	85457	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	85458	85459	.	+	.	intron_id 8 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	85458	89317	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	89316	89317	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	89318	89417	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	89318	89417	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	89418	89419	.	+	.	intron_id 9 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	89418	91347	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	91346	91347	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	91348	91354	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	91348	91354	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	91355	91356	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	91355	94972	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	94971	94972	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	94973	95013	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	94973	95013	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	95014	95015	.	+	.	intron_id 11 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	95014	99155	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	99154	99155	.	+	.	intron_id 10 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	99156	99204	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	99156	99204	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	99205	99206	.	+	.	intron_id 12 ; splice_site "AT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	99205	124662	.	+	.	intron_id 12
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	124661	124662	.	+	.	intron_id 11 ; splice_site "AC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	124663	124690	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	124663	124690	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	124691	124692	.	+	.	intron_id 13 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	124691	130919	.	+	.	intron_id 13
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	130918	130919	.	+	.	intron_id 12 ; splice_site "AC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	130920	131049	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	130920	131049	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	131050	131051	.	+	.	intron_id 14 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	131050	135006	.	+	.	intron_id 14
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	135005	135006	.	+	.	intron_id 13 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	135007	135053	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	135007	135053	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	135054	135055	.	+	.	intron_id 15 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	135054	135400	.	+	.	intron_id 15
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	135399	135400	.	+	.	intron_id 14 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	135401	135447	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	135401	135447	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	135448	135449	.	+	.	intron_id 16 ; splice_site "CT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	135448	142775	.	+	.	intron_id 16
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	142774	142775	.	+	.	intron_id 15 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	142776	142812	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	142776	142812	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	142813	142814	.	+	.	intron_id 17 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	142813	146127	.	+	.	intron_id 17
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	146126	146127	.	+	.	intron_id 16 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	146128	146169	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	146128	146169	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	146170	146171	.	+	.	intron_id 18 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	146170	146851	.	+	.	intron_id 18
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	146850	146851	.	+	.	intron_id 17 ; splice_site "AT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	146852	146924	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	146852	146924	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	146925	146926	.	+	.	intron_id 19 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	146925	160846	.	+	.	intron_id 19
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	160845	160846	.	+	.	intron_id 18 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	160847	160951	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	160847	160951	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	160952	160953	.	+	.	intron_id 20 ; splice_site "CT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	160952	167057	.	+	.	intron_id 20
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	167056	167057	.	+	.	intron_id 19 ; splice_site "TG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	167058	167103	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	167058	167103	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	167104	167105	.	+	.	intron_id 21 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	167104	173114	.	+	.	intron_id 21
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	173113	173114	.	+	.	intron_id 20 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	173115	173191	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	173115	173191	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	173192	173193	.	+	.	intron_id 22 ; splice_site "GC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	173192	174988	.	+	.	intron_id 22
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	174987	174988	.	+	.	intron_id 21 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	174989	175023	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	174989	175023	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	175024	175025	.	+	.	intron_id 23 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	175024	186622	.	+	.	intron_id 23
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	186621	186622	.	+	.	intron_id 22 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	186623	186624	.	+	.	intron_id 24 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	186623	187322	.	+	.	intron_id 24
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	187321	187322	.	+	.	intron_id 23 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	187323	187346	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	187323	187346	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	9147	187346	112	+	.	alignment_id 4 ; Query SPP00000079_2.0 ; Align 9147 2 99 ; Align 13030 36 57 ; Align 13090 55 57 ; Align 17604 75 24 ; Align 22980 84 90 ; Align 60972 115 60 ; Align 61735 135 21 ; Align 80496 143 27 ; Align 85419 153 39 ; Align 89318 166 99 ; Align 91350 200 3 ; Align 94974 202 39 ; Align 99158 216 45 ; Align 124664 232 27 ; Align 130920 241 129 ; Align 135009 285 45 ; Align 135401 300 45 ; Align 142777 316 36 ; Align 146128 328 42 ; Align 146852 342 72 ; Align 160849 367 102 ; Align 167060 402 42 ; Align 173116 417 75 ; Align 174991 443 33 ; Align 187323 454 24
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 110
   Query range: 3 -> 263
  Target range: 13304 -> 190880

      4 : AlaArgProGlyGlnArgGlyPro{P}  >>>> Target Intron 1 >>>>  {r :     12
          :!!|||  !|||  !|||||||||{|}           1590 bp           {|
          SerArgGluGlyTrpArgGlyPro{P}++                         ++{r
  13305 : TCCAGGGAGGGCTGGCGGGGACCA{C}gt.........................ag{C :  14920

     13 : o}SerProGlyProAlaAlaGlnProProAlaProProArgArgArgAlaArgSerLe :     31
          |}|||! !  ! !!  ! !!.!.||||||||| !!|||! !  !!:!||| !!! !||
          o}SerHisProSerLeuProAspProProAlaThrProThrPheGlnAla***MetLe
  14921 : A}TCCCACCCTTCTCTGCCTGACCCCCCAGCCACCCCCACCTTCCAGGCTTGAATGCT :  14976

     32 : uAlaLeu  >>>> Target Intron 2 >>>>  LeuGlyAlaLeuLeuAlaAlaA :     41
          |  !  !           40896 bp          :!!|||!.!  !  !!.!!.!|
          uLeuSer++                         ++IleGlyValThrAlaGlyGlyA
  14977 : ACTCAGTgt.........................agATAGGTGTGACAGCAGGCGGGG :  55902

     42 : laAlaAlaAlaAlaValArgValCysAlaArgHisAlaGluAlaGlnAlaAlaAlaAr :     60
          ||||||||! !  !:!!||||||||||||! !!!.:!!|||::!  !!.!  !:!! !
          laAlaAlaGluTrpLeuArgValCysAlaLeuGlnSerGluSerTrpValGlnSerTr
  55903 : CAGCAGCTGAGTGGCTAAGAGTCTGTGCTCTGCAGTCAGAGAGCTGGGTCCAATCCTG :  55959

     61 : gGlnGluLeuAla{Le}  >>>> Target Intron 3 >>>>  {u}LysThrLeu :     68
          !!  .!.|||:!!{||}           4711 bp           {|}  !  !  !
          pLeuHisLeuSer{Le}++                         +-{u}ValGlySer
  55960 : GCTCCACCTCTCT{CT}gt.........................ac{C}GTGGGCAGC :  60694

     69 : GlyThrAspGlyLeuPheLeuPheSerSerLeu  >>>> Target Intron 4 >> :     80
          .!!..!  !  !  !||||||.!.|||..!|||           16679 bp      
          SerValLeuThrAlaPheLeuLeuSerGlnLeu++                       
  60695 : AGTGTCCTCACCGCATTCCTTCTGAGCCAGCTGgt....................... :  60732

     81 : >>  AspThrAsp{G}  >>>> Target Intron 5 >>>>  {ly}AspMetTyr :     86
              |||:!!!!:{|}           12809 bp          {||}  !:!:|||
            ++AspSerGlu{G}++                         ++{ly}ProLeuTyr
  60733 : ..agGACTCTGAA{G}gt.........................ag{GC}CCCCTTTAC :  90236

     87 : IleSerProGluGluPheLysProIleAlaGluLysLeuThr{G}  >>>> Target :    101
            !:!!  !|||....!!   ! !:!:..!..!  !||||||{|}           34
          SerAlaSerGluSerIleLeuGlnLeuCysArgLeuLeuThr{G}-+           
  90237 : TCTGCCAGTGAATCCATTCTCCAGCTGTGTCGGCTACTCACA{G}ct........... :  90284

    102 :  Intron 6 >>>>  {ly}SerCysSerValThrGln  >>>> Target Intron :    108
          58 bp           {||}  !  !:!!|||..!|||           8865 bp  
                        ++{ly}LeuThrAlaValValGln++                  
  90285 : ..............ag{GG}CTGACTGCAGTGGTCCAGgt.................. :  93762

    109 :  7 >>>>  ThrGlyValGlnTrpCysSerHisSerSerLeuGln{P}  >>>> Tar :    120
                   !.!  !||||||!::|||!!!||||||.!!|||:!!{ }          
                 +-AsnLeuValGlnPheCysThrHisSerGlyLeuLys{A}++        
  93763 : .......aaAACTTGGTCCAGTTTTGCACTCACAGTGGCCTCAAA{G}gt........ : 102664

    121 : get Intron 8 >>>>  {ro}GlnLeuProTrpLeuAsnUnkSerSerCysLeuSe :    132
           11670 bp          {!!}|||! !! !|||  !!:!   :!! !!..!|||  
                           ++{la}GlnSerGlnTrpGluSerCysAlaArgAlaLeuHi
 102665 : .................ag{CT}CAGTCCCAGTGGGAGAGCTGTGCCCGAGCTCTCCA : 114367

    133 : rLeu  >>>> Target Intron 9 >>>>  LeuArgSerThrProAlaAlaSerC :    142
          !|||           3717 bp           ! !! !..!  !|||!.!  !||||
          sLeu++                         ++HisProGlnArgProGlyArgSerC
 114368 : CCTGgt.........................agCATCCTCAGCGCCCAGGGCGATCAT : 118114

    143 : ysGluGluGluGluLeuProProAspProSerGluGluThrLeuThrIleGluAlaAr :    161
          ||   ..!..!.!.  !|||  !! !||||||   !   !!  !:!!  !...|||! 
          ysProArgArgAsnArgProGlyAlaProSerCysGlyProGlySerProArgAlaTh
 118115 : GCCCCCGGAGAAACAGGCCAGGTGCCCCATCTTGTGGTCCAGGTTCCCCCCGCGCCAC : 118171

    162 : gPheGlnProLeuLeuProGluThrMetThrLysSerLysAspGlyPheLeuGlyVal :    180
          !   |||  !  !! ! !!     !  !||| ! |||  !..!|||! !|||  !  !
          rArgGlnCysArgSerAlaProArgGluThrHisSerProSerGlySerLeuLeuPro
 118172 : TCGGCAATGTAGGTCAGCCCCCCGGGAGACACATTCACCAAGTGGGTCTCTATTGCCT : 118228

    181 : SerArgLeu  >>>> Target Intron 10 >>>>  AlaLeuSerGlyLeuArgA :    190
          .!!|||  !            7324 bp           ! !  !  !|||||||||.
          GlyArgLys++                          ++GluArgValGlyLeuArgG
 118229 : GGGAGGAAGgt..........................agGAGAGAGTGGGACTCAGGC : 125582

    191 : snTrpThrAlaAlaAlaSerProSer{A}  >>>> Target Intron 11 >>>>  :    199
          !.||||||  !  ! !!|||||| !!{|}            1226 bp          
          lnTrpThrArgArgProSerProPro{A}+-                          +
 125583 : AATGGACAAGGAGGCCGAGCCCTCCG{G}gg..........................a : 126834

    200 :  {la}ValPheAlaThrArgHisPheGlnProPheLeuPro  >>>> Target Int :    212
           {||}:!!|||  !.!!! !:!!  !...||||||||||||            5734 
          -{la}MetPheLeuAlaLeuTyrProSerProPheLeuPro++               
 126835 : t{CG}ATGTTTCTAGCTCTCTATCCCTCTCCCTTCCTCCCTgt............... : 126876

    213 : ron 12 >>>>  ProProGly  >>>> Target Intron 13 >>>>  GlnGlu :    216
          bp           |||||| !!           13634 bp           ...|||
                     -+ProProArg++                          ++SerGlu
 126877 : ...........tgCCTCCCAGGgt..........................agTCTGAG : 146254

    217 : LeuGlyGluProTrp{Tr}  >>>> Target Intron 14 >>>>  {p}IleIle :    224
          ||||||!!:! !|||{ !}            8491 bp           { }.!!:!!
          LeuGlyAspGlnTrp{Gl}++                          ++{y}PheLeu
 146255 : CTGGGAGATCAGTGG{GG}gt..........................ag{C}TTCCTC : 154769

    225 : ProSerGlu  >>>> Target Intron 15 >>>>  LeuSer{M}  >>>> Tar :    230
          ||||||:!!            1672 bp           :!!!.!{|}          
          ProSerGln-+                          ++MetLys{M}++        
 154770 : CCTTCCCAGct..........................agATGAAG{A}gt........ : 156462

    231 : get Intron 16 >>>>  {et}PheThrGlyTyrLeuSerAsnAsnArgPheTyrP :    242
           17281 bp           {||}  !||||||! !:!!|||::!...!.!.!!||| 
                            ++{et}HisThrGlyCysValSerSerGlyHisIleTyrA
 156463 : ..................ag{TG}CACACTGGCTGTGTTTCATCTGGACACATCTATG : 173776

    243 : roProProProLysGlyLysGluValIleIle  >>>> Target Intron 17 >> :    253
          !!  !|||  !   |||   ..!  !!!:  !            2741 bp       
          laPheProGlyProGlyLeuArgLysMetGln++                        
 173777 : CATTCCCAGGTCCTGGGCTCAGGAAGATGCAAgt........................ : 173811

    254 : >>  HisArgLeuLeuSerMetPhe  >>>> Target Intron 18 >>>>    > :    260
              |||  !|||||||||:!:              10052 bp              
            ++HisPheLeuLeuSerValGln++                          ++++ 
 173812 : ..agCACTTCCTGCTGAGCGTTCAGgt..........................aggt. : 186625

    261 : >>> Target Intron 19 >>>>  HisProArgPro :    263
                   4246 bp           .!.|||  !|||
                                   ++GluProAspPro
 186626 : .........................agGAGCCGGACCCA : 190880

vulgar: SPP00000079_2.0 3 263 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 13304 190880 + 110 M 8 24 S 0 1 5 0 2 I 0 1586 3 0 2 S 1 2 M 21 63 5 0 2 I 0 40892 3 0 2 M 31 93 S 0 2 5 0 2 I 0 4707 3 0 2 S 1 1 M 14 42 5 0 2 I 0 16675 3 0 2 M 3 9 S 0 1 5 0 2 I 0 12805 3 0 2 S 1 2 M 17 51 S 0 1 5 0 2 I 0 3454 3 0 2 S 1 2 M 6 18 5 0 2 I 0 8861 3 0 2 M 12 36 S 0 1 5 0 2 I 0 11666 3 0 2 S 1 2 M 13 39 5 0 2 I 0 3713 3 0 2 M 50 150 5 0 2 I 0 7320 3 0 2 M 15 45 S 0 1 5 0 2 I 0 1222 3 0 2 S 1 2 M 12 36 5 0 2 I 0 5730 3 0 2 M 3 9 5 0 2 I 0 13630 3 0 2 M 7 21 S 0 2 5 0 2 I 0 8487 3 0 2 S 1 1 M 5 15 5 0 2 I 0 1668 3 0 2 M 2 6 S 0 1 5 0 2 I 0 17277 3 0 2 S 1 2 M 22 66 5 0 2 I 0 2737 3 0 2 M 7 21 5 0 2 I 0 10048 3 0 2 5 0 2 I 0 4242 3 0 2 M 4 12
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	13305	190880	110	+	.	gene_id 5 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	13305	13329	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	13305	13329	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	13330	13331	.	+	.	intron_id 1 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	13330	14919	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	14918	14919	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	14920	14984	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	14920	14984	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	14985	14986	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	14985	55880	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	55879	55880	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	55881	55975	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	55881	55975	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	55976	55977	.	+	.	intron_id 3 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	55976	60686	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	60685	60686	.	+	.	intron_id 2 ; splice_site "AC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	60687	60729	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	60687	60729	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	60730	60731	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	60730	77408	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	77407	77408	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	77409	77418	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	77409	77418	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	77419	77420	.	+	.	intron_id 5 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	77419	90227	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	90226	90227	.	+	.	intron_id 4 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	90228	90281	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	90228	90281	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	90282	90283	.	+	.	intron_id 6 ; splice_site "CT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	90282	93739	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	93738	93739	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	93740	93759	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	93740	93759	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	93760	93761	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	93760	102624	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	102623	102624	.	+	.	intron_id 6 ; splice_site "AA"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	102625	102661	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	102625	102661	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	102662	102663	.	+	.	intron_id 8 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	102662	114331	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	114330	114331	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	114332	114372	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	114332	114372	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	114373	114374	.	+	.	intron_id 9 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	114373	118089	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	118088	118089	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	118090	118239	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	118090	118239	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	118240	118241	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	118240	125563	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	125562	125563	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	125564	125609	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	125564	125609	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	125610	125611	.	+	.	intron_id 11 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	125610	126835	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	126834	126835	.	+	.	intron_id 10 ; splice_site "AT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	126836	126873	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	126836	126873	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	126874	126875	.	+	.	intron_id 12 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	126874	132607	.	+	.	intron_id 12
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	132606	132607	.	+	.	intron_id 11 ; splice_site "TG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	132608	132616	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	132608	132616	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	132617	132618	.	+	.	intron_id 13 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	132617	146250	.	+	.	intron_id 13
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	146249	146250	.	+	.	intron_id 12 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	146251	146273	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	146251	146273	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	146274	146275	.	+	.	intron_id 14 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	146274	154764	.	+	.	intron_id 14
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	154763	154764	.	+	.	intron_id 13 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	154765	154780	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	154765	154780	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	154781	154782	.	+	.	intron_id 15 ; splice_site "CT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	154781	156452	.	+	.	intron_id 15
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	156451	156452	.	+	.	intron_id 14 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	156453	156459	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	156453	156459	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	156460	156461	.	+	.	intron_id 16 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	156460	173740	.	+	.	intron_id 16
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	173739	173740	.	+	.	intron_id 15 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	173741	173808	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	173741	173808	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	173809	173810	.	+	.	intron_id 17 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	173809	176549	.	+	.	intron_id 17
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	176548	176549	.	+	.	intron_id 16 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	176550	176570	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	176550	176570	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	176571	176572	.	+	.	intron_id 18 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	176571	186622	.	+	.	intron_id 18
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	186621	186622	.	+	.	intron_id 17 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	186623	186624	.	+	.	intron_id 19 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	186623	190868	.	+	.	intron_id 19
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	190867	190868	.	+	.	intron_id 18 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	190869	190880	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	190869	190880	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	13305	190880	110	+	.	alignment_id 5 ; Query SPP00000079_2.0 ; Align 13305 4 24 ; Align 14922 13 63 ; Align 55881 34 93 ; Align 60688 66 42 ; Align 77409 80 9 ; Align 90230 84 51 ; Align 93742 102 18 ; Align 102625 108 36 ; Align 114334 121 39 ; Align 118090 134 150 ; Align 125564 184 45 ; Align 126838 200 36 ; Align 132608 212 9 ; Align 146251 215 21 ; Align 154766 223 15 ; Align 156453 228 6 ; Align 173743 231 66 ; Align 176550 253 21 ; Align 190869 260 12
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 105
   Query range: 121 -> 254
  Target range: 13585 -> 197841

    122 : LeuProTrpLeuAsnUnkSerSerCysLeuSer{L}  >>>> Target Intron 1 :    133
          |||||||||  !|||...!!!!!!|||:!!!!!{:}            937 bp    
          LeuProTrpGlyAsnThrCysThrCysMetThr{V}+-                    
  13586 : CTACCCTGGGGAAATACTTGCACCTGCATGACA{G}ga.................... :  13622

    134 :  >>>>  {eu}LeuArgSerThrProAlaAlaSerCys{G}  >>>> Target Int :    143
                 {!!}|||||||||  !|||..!..!  !  !{|}           10106 
               ++{al}LeuArgSerGlnProCysCysHisLeu{G}++               
  13623 : .....ag{TC}CTCAGGAGCCAACCCTGCTGTCACCTT{G}gt............... :  14589

    144 : ron 2 >>>>  {lu}GluGluGluLeuProProAspProSerGluGluThrLeuThr :    157
          bp          {||}|||! !...!!!|||  !!    !|||||||||! !  !!:!
                    ++{lu}GluGlySerPheProGlyGlyAsnSerGluGluIleArgSer
  14590 : ..........ag{AA}GAAGGATCTTTCCCTGGAGGAAATTCAGAAGAAATTAGAAGC :  24734

    158 : IleGluAlaArgPheGln{P}  >>>> Target Intron 3 >>>>  {ro}LeuL :    166
            !..!  !!:!   |||{ }           34050 bp          { !}  !:
          CysArgArgLysThrGln{A}++                         -+{sp}LysV
  24735 : TGCAGAAGAAAGACGCAA{G}gt.........................gg{AT}AAAG :  58811

    167 : euProGluThrMetThrLysSerLysAspGlyPheLeuGlyValSerArg  >>>> T :    183
          !!|||! !|||.!.!:!|||!.!!..! !  !|||:!!||| !!..!|||        
          alProGlyThrPheSerLysLysSerGlyPhePheValGlyPheGlnArg++      
  58812 : TTCCTGGAACTTTCAGCAAAAAAAGTGGCTTTTTTGTTGGGTTTCAGAGGgt...... :  58864

    184 : arget Intron 4 >>>>  LeuAlaLeuSerGlyLeu{A}  >>>> Target In :    189
             1270 bp           |||  !||||||||||||{|}           31197
                             ++LeuLeuLeuSerGlyLeu{A}++              
  58865 : ...................agCTTCTTCTTTCTGGACTA{C}gt.............. :  60153

    190 : tron 5 >>>>  {rg}Asn{Tr}  >>>> Target Intron 6 >>>>  {p}Th :    192
           bp          {||}   {||}           23362 bp          {|}||
                     ++{rg}Leu{Tr}++                         ++{p}Th
  60154 : ...........ag{GC}TTG{TG}gt.........................ag{G}AC : 114718

    193 : rAlaAlaAlaSerProSerAla{Va}  >>>> Target Intron 7 >>>>  {l} :    200
          |!.! !!||||||  !|||::!{! }           3413 bp           {!}
          rValProAlaSerGluSerSer{Gl}++                         ++{y}
 114719 : AGTACCTGCCTCTGAGAGCAGT{GG}gt.........................ag{G} : 118157

    201 : PheAlaThrArgHisPheGlnProPheLeuProProProGlyGlnGluLeuGly{Gl} :    219
          ||| !! !!||||||!    !  !!  :!!  !|||||||||.!.  !!!!  !{.!}
          PheProProArgHisSerAlaMet***ValSerProProGlyAspThrPheThr{As}
 118158 : TTCCCCCCGCGCCACTCGGCAATGTAGGTCAGCCCCCCGGGAGACACATTCACC{AA} : 118212

    220 :   >>>> Target Intron 8 >>>>  {u}ProTrpTrpIleIleProSerGluLe :    228
                     40527 bp          {.}|||||||||  !! !|||..!.!.  
          ++                         ++{n}ProTrpTrpAspSerProGluHisAl
 118213 : gt.........................ag{C}CCCTGGTGGGACAGCCCTGAGCATGC : 158766

    229 : uSerMet  >>>> Target Intron 9 >>>>  PheThrGlyTyrLeuSerAsnA :    238
          !|||  !           3966 bp            !!|||! !   |||!:!:::!
          aSerTrp++                         ++ValThrValThrLeuAsnSerT
 158767 : TTCCTGGgt.........................agGTTACAGTCACACTCAATTCAA : 162762

    239 : snArgPheTyrProProProProLys  >>>> Target Intron 10 >>>>     :    247
          ..!:!  !  !  !|||  !|||!:!           23834 bp             
          hrGlnHisThrLysProLeuProArg++                          ++++
 162763 : CACAGCATACCAAGCCTTTGCCCAGAgt..........................aggt : 186623

    248 : >>>> Target Intron 11 >>>>  GlyLysGluValIleIleHisArg :    254
                   11195 bp             !|||!  :!!:!!:!!||||||
                                    ++ThrLysAlaLeuLeuValHisArg
 186624 : ..........................agACGAAAGCTCTTCTTGTCCACCGG : 197841

vulgar: SPP00000079_2.0 121 254 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 13585 197841 + 105 M 11 33 S 0 1 5 0 2 I 0 933 3 0 2 S 1 2 M 9 27 S 0 1 5 0 2 I 0 10102 3 0 2 S 1 2 M 20 60 S 0 1 5 0 2 I 0 34046 3 0 2 S 1 2 M 18 54 5 0 2 I 0 1266 3 0 2 M 6 18 S 0 1 5 0 2 I 0 31193 3 0 2 S 1 2 M 1 3 S 0 2 5 0 2 I 0 23358 3 0 2 S 1 1 M 8 24 S 0 2 5 0 2 I 0 3409 3 0 2 S 1 1 M 18 54 S 0 2 5 0 2 I 0 40523 3 0 2 S 1 1 M 11 33 5 0 2 I 0 3962 3 0 2 M 16 48 5 0 2 I 0 23830 3 0 2 5 0 2 I 0 11191 3 0 2 M 8 24
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	13586	197841	105	+	.	gene_id 6 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	13586	13619	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	13586	13619	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	13620	13621	.	+	.	intron_id 1 ; splice_site "GA"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	13620	14556	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	14555	14556	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	14557	14586	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	14557	14586	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	14587	14588	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	14587	24692	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	24691	24692	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	24693	24755	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	24693	24755	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	24756	24757	.	+	.	intron_id 3 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	24756	58805	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	58804	58805	.	+	.	intron_id 2 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	58806	58861	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	58806	58861	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	58862	58863	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	58862	60131	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	60130	60131	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	60132	60150	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	60132	60150	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	60151	60152	.	+	.	intron_id 5 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	60151	91347	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	91346	91347	.	+	.	intron_id 4 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	91348	91354	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	91348	91354	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	91355	91356	.	+	.	intron_id 6 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	91355	114716	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	114715	114716	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	114717	114743	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	114717	114743	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	114744	114745	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	114744	118156	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	118155	118156	.	+	.	intron_id 6 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	118157	118213	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	118157	118213	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	118214	118215	.	+	.	intron_id 8 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	118214	158740	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	158739	158740	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	158741	158774	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	158741	158774	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	158775	158776	.	+	.	intron_id 9 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	158775	162740	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	162739	162740	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	162741	162788	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	162741	162788	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	162789	162790	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	162789	186622	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	186621	186622	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	186623	186624	.	+	.	intron_id 11 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	186623	197817	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	197816	197817	.	+	.	intron_id 10 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	197818	197841	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	197818	197841	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	13586	197841	105	+	.	alignment_id 6 ; Query SPP00000079_2.0 ; Align 13586 122 33 ; Align 14559 134 27 ; Align 24695 144 60 ; Align 58808 165 54 ; Align 60132 183 18 ; Align 91350 190 3 ; Align 114718 192 24 ; Align 118158 201 54 ; Align 158742 220 33 ; Align 162741 231 48 ; Align 197818 247 24
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000079_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens)
        Target: gi|411115908|gb|JH977655.1|:subseq(3783810,199785) Eptesicus fuscus unplaced genomic scaffold scaffold00045, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 103
   Query range: 3 -> 152
  Target range: 22518 -> 196104

      4 : AlaArgProGlyGln  >>>> Target Intron 1 >>>>  Arg{G}  >>>> T :     10
          |||||| !!||||||           52495 bp            !{|}        
          AlaArgThrGlyGln++                         ++Ser{G}++      
  22519 : GCTCGGACCGGGCAGgt.........................agTCA{G}gt...... :  75035

     11 : arget Intron 2 >>>>  {ly}ProProSerProGlyProAlaAlaGln{P}  > :     20
             29187 bp          {||}||| !!:!!|||  !||||||!.!:!!{ }   
                             ++{ly}ProAlaAlaProProProAlaGlyGlu{G}+- 
  75036 : ...................ag{GG}CCTGCAGCGCCGCCTCCTGCCGGGGAA{G}gc. : 104252

     21 : >>> Target Intron 3 >>>>  {ro}ProAlaProProArgArgArgAlaArgS :     30
                  1278 bp           { !}|||::!! !|||!.!|||!:!! !..!|
                                  ++{ly}ProSerLeuProHisArgLysGluGluS
 104253 : ........................ag{GG}CCAAGCCTTCCCCACCGCAAGGAGGAGT : 105557

     31 : erLeuAlaLeu{Le}  >>>> Target Intron 4 >>>>  {u}GlyAlaLeuLe :     38
          ||  !||||||{||}           3474 bp           {|}|||  !! !! 
          erGluAlaLeu{Le}++                         ++{u}GlyArgCysSe
 105558 : CAGAAGCCCTC{CT}gt.........................ag{G}GGGCGATGCTC : 109055

     39 : uAlaAlaAlaAlaAlaAlaAlaVal  >>>> Target Intron 5 >>>>  ArgV :     48
          !|||!.!  !::!|||  !::!  !           34553 bp          ! !|
          rAlaGlyLeuSerAlaTrpSerGln++                         ++ProV
 109056 : TGCAGGCCTCAGTGCCTGGAGCCAGgt.........................agCCCG : 143638

     49 : alCysAlaArgHisAlaGluAlaGlnAlaAlaAlaArgGlnGluLeuAlaLeuLys   :     67
          |||||  !!:!   ::!|||!.!.!.  !.!!  !||||||||||||:!!|||:!!  
          alCysLeuLys***SerGluGlyAspLeuThrLeuArgGlnGluLeuSerLeuGlu++
 143639 : TGTGCCTGAAATGAAGTGAAGGGGACCTGACTCTCAGACAGGAGCTGTCTCTAGAGgt : 143695

     68 : >>>> Target Intron 6 >>>>  ThrLeuGlyThrAspGlyLeuPheLeuPheS :     77
                   11129 bp          ! !:!!|||  !   |||||||||!!!   !
                                   ++LysMetGlyGln***GlyLeuPhePheArgT
 143696 : .........................agAAAATGGGACAATGAGGTCTTTTTTTTAGAA : 154854

     78 : erSerLeuAspThrAspGlyAsp  >>>> Target Intron 7 >>>>  MetTyr :     86
          !!  !! !   ..!.!.  !:!!           7567 bp           :!! ! 
          hrValTrpProValGlnThrAsn++                         ++ValGln
 154855 : CAGTATGGCCAGTTCAGACAAATgt.........................agGTGCAA : 162448

     87 : IleSerProGluGlu  >>>> Target Intron 8 >>>>  PheLysProIleAl :     96
              !!|||!  :!!           2744 bp              :!!||||||  
          GluProProGlyGln++                         ++AlaGluProIleAr
 162449 : GAGCCACCTGGCCAGgt.........................agGCAGAACCCATAAG : 165222

     97 : aGluLysLeuThrGlySerCysSerValThrGlnThrGlyValGlnTrpCysSerHis :    115
          !  !|||! !||||||!.!   ..!  !  !|||!:!  !! !...|||   .!!.!.
          gThrLysGlnThrGlyLysThrGlnGlnGlnGlnSerLeuGlySerTrpLysGlyGlu
 165223 : GACAAAGCAAACAGGGAAAACACAACAGCAACAAAGTCTTGGCAGCTGGAAAGGAGAA : 165279

    116 : SerSer  >>>> Target Intron 9 >>>>  LeuGlnProGlnLeuProTrpLe :    125
          !!!  !           13000 bp            !.!. !!:!!|||  !|||||
          ArgHis++                         ++ThrAspAlaLysLeuLysTrpLe
 165280 : AGACATgt.........................agACAGATGCCAAATTGAAGTGGTT : 178309

    126 : uAsn{Un}  >>>> Target Intron 10 >>>>  {k}SerSerCysLeuSerLe :    133
          ||||{  }            5253 bp           { }|||!!!! !! ! !!||
          uAsn{Gl}++                          ++{y}SerThrPheSerProLe
 178310 : AAAT{GG}gt..........................ag{G}TCTACATTTTCTCCCCT : 183586

    134 : uLeuArgSer{T}  >>>> Target Intron 11 >>>>  {hr}ProAlaAlaSe :    141
          |! !|||  !{|}            8824 bp           {||}||||||::!||
          uSerArgHis{T}++                          ++{hr}ProAlaSerSe
 183587 : TTCTAGGCAC{A}gt..........................ag{CC}CCAGCTAGCTC : 192434

    142 : rCysGluGlu{G}  >>>> Target Intron 12 >>>>  {lu}GluLeuProPr :    149
          ||||   ..!{|}            3635 bp           {||}..!! !|||||
          rCysLeuSer{G}+-                          ++{lu}ArgProProPr
 192435 : CTGCCTCTCA{G}gg..........................ag{AA}AGACCTCCTCC : 196093

    150 : oAspProSer :    152
          |.!.||||||
          oGlnProSer
 196094 : CCAGCCAAGC : 196104

vulgar: SPP00000079_2.0 3 152 . gi|411115908|gb|JH977655.1|:subseq(3783810,199785) 22518 196104 + 103 M 5 15 5 0 2 I 0 52491 3 0 2 M 1 3 S 0 1 5 0 2 I 0 29183 3 0 2 S 1 2 M 9 27 S 0 1 5 0 2 I 0 1274 3 0 2 S 1 2 M 13 39 S 0 2 5 0 2 I 0 3470 3 0 2 S 1 1 M 12 36 5 0 2 I 0 34549 3 0 2 M 20 60 5 0 2 I 0 11125 3 0 2 M 18 54 5 0 2 I 0 7563 3 0 2 M 7 21 5 0 2 I 0 2740 3 0 2 M 26 78 5 0 2 I 0 12996 3 0 2 M 9 27 S 0 2 5 0 2 I 0 5249 3 0 2 S 1 1 M 9 27 S 0 1 5 0 2 I 0 8820 3 0 2 S 1 2 M 7 21 S 0 1 5 0 2 I 0 3631 3 0 2 S 1 2 M 7 21
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-23
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	gene	22519	196104	103	+	.	gene_id 7 ; sequence SPP00000079_2.0 ; gene_orientation +
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	22519	22533	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	22519	22533	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	22534	22535	.	+	.	intron_id 1 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	22534	75028	.	+	.	intron_id 1
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	75027	75028	.	+	.	intron_id 0 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	75029	75032	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	75029	75032	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	75033	75034	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	75033	104219	.	+	.	intron_id 2
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	104218	104219	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	104220	104249	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	104220	104249	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	104250	104251	.	+	.	intron_id 3 ; splice_site "GC"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	104250	105527	.	+	.	intron_id 3
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	105526	105527	.	+	.	intron_id 2 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	105528	105570	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	105528	105570	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	105571	105572	.	+	.	intron_id 4 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	105571	109044	.	+	.	intron_id 4
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	109043	109044	.	+	.	intron_id 3 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	109045	109081	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	109045	109081	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	109082	109083	.	+	.	intron_id 5 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	109082	143634	.	+	.	intron_id 5
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	143633	143634	.	+	.	intron_id 4 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	143635	143694	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	143635	143694	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	143695	143696	.	+	.	intron_id 6 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	143695	154823	.	+	.	intron_id 6
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	154822	154823	.	+	.	intron_id 5 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	154824	154877	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	154824	154877	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	154878	154879	.	+	.	intron_id 7 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	154878	162444	.	+	.	intron_id 7
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	162443	162444	.	+	.	intron_id 6 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	162445	162465	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	162445	162465	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	162466	162467	.	+	.	intron_id 8 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	162466	165209	.	+	.	intron_id 8
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	165208	165209	.	+	.	intron_id 7 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	165210	165287	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	165210	165287	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	165288	165289	.	+	.	intron_id 9 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	165288	178287	.	+	.	intron_id 9
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	178286	178287	.	+	.	intron_id 8 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	178288	178316	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	178288	178316	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	178317	178318	.	+	.	intron_id 10 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	178317	183569	.	+	.	intron_id 10
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	183568	183569	.	+	.	intron_id 9 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	183570	183598	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	183570	183598	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	183599	183600	.	+	.	intron_id 11 ; splice_site "GT"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	183599	192422	.	+	.	intron_id 11
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	192421	192422	.	+	.	intron_id 10 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	192423	192446	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	192423	192446	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice5	192447	192448	.	+	.	intron_id 12 ; splice_site "GG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	intron	192447	196081	.	+	.	intron_id 12
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	splice3	196080	196081	.	+	.	intron_id 11 ; splice_site "AG"
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	cds	196082	196104	.	+	.	
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	exon	196082	196104	.	+	.	insertions 0 ; deletions 0
gi|411115908|gb|JH977655.1|:subseq(3783810,199785)	exonerate:protein2genome:local	similarity	22519	196104	103	+	.	alignment_id 7 ; Query SPP00000079_2.0 ; Align 22519 4 15 ; Align 75029 9 3 ; Align 104222 11 27 ; Align 105530 21 39 ; Align 109046 35 36 ; Align 143635 47 60 ; Align 154824 67 54 ; Align 162445 85 21 ; Align 165210 92 78 ; Align 178288 118 27 ; Align 183571 128 27 ; Align 192425 138 21 ; Align 196084 146 21
# --- END OF GFF DUMP ---
#
