Command line: [exonerate -m p2g --showtargetgff -q selhseq.fa.U_to_X -t gi|411115729|gb|JH977834.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001622_2.0 # Protein # Selenoprotein H (SelH) # Microbat (Myotis lucifugus) 
        Target: gi|411115729|gb|JH977834.1|:subseq(919760,100472) Eptesicus fuscus unplaced genomic scaffold scaffold00224, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 495
   Query range: 0 -> 120
  Target range: 49918 -> 50472

     1 : MetAlaSerArgGlyArgLysArgLysAlaGluAlaAlaValAlaAlaAlaAlaGluLys :    20
         ||||||||||||||||||||||||||||||||||||||||||!.!:!!||||||||||||
         MetAlaSerArgGlyArgLysArgLysAlaGluAlaAlaValValSerAlaAlaGluLys
 49919 : ATGGCTTCCCGCGGGCGGAAGCGGAAGGCCGAGGCGGCGGTGGTCTCGGCAGCTGAGAAG : 49976

    21 : GlnGluLysLeuAlaGlyGlyGlnLysGluValGluGluAlaThrValValIleGluHis :    40
         |||||||||||||||||||||||||||||||||:!!||||||||||||||||||||||||
         GlnGluLysLeuAlaGlyGlyGlnLysGluValLysGluAlaThrValValIleGluHis
 49977 : CAGGAGAAGCTGGCTGGCGGCCAGAAGGAAGTGAAGGAGGCGACGGTCGTTATCGAGCAT : 50036

    41 : {Th}  >>>> Target Intron 1 >>>>  {r}AsnUnkThrGlyTyrGlyArgAsn :    49
         {  }            88 bp            {!}!:!     !! !||||||||||||
         {Tr}++                         +-{p}Ser***ArgValTyrGlyArgAsn
 50037 : {TG}gt.........................ac{G}AGTTGACGCGTGTACGGGCGCAAC : 50151

    50 : ProProAlaLeuAsnGlnGlyLeuArgLeuGluAlaProGluLeuProValLysValAsn :    69
          !! !!||||||!:!|||!.!||||||||||||||| !!|||||||||||||||||||||
         AlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaSerGluLeuProValLysValAsn
 50152 : GCCGCGGCCCTGAGCCAGGCGCTGCGCCTAGAGGCCTCGGAGCTCCCGGTGAAGGTGAAC : 50211

    70 : ProAlaLysAlaArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer{S} :    89
         ||||||||| !!|||||||||||||||||||||||||||||||||||||||||||||{|}
         ProAlaLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGlySer{S}
 50212 : CCTGCCAAGCCCCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCCCGGACGGCAGC{A} : 50271

    90 :   >>>> Target Intron 2 >>>>  {er}AlaGluLeuTrpThrGlyIleLysLys :    98
                     106 bp           {||}!.!||||||||||||||||||||||||
         ++                         ++{er}ValGluLeuTrpThrGlyIleLysLys
 50272 : gt.........................ag{GT}GTGGAGCTCTGGACTGGGATTAAGAAG : 50404

    99 : GlyProProArgLysLeuLysPheProGluProGlnGluValValGluLysLeuLysLys :   118
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyProProArgLysLeuLysPheProGluProGlnGluValValGluLysLeuLysLys
 50405 : GGGCCCCCACGCAAACTCAAGTTCCCTGAGCCGCAAGAAGTCGTGGAGAAGCTGAAGAAG : 50464

   119 : TyrLeu :   120
         ||||||
         TyrLeu
 50465 : TACCTT : 50472

vulgar: SPP00001622_2.0 0 120 . gi|411115729|gb|JH977834.1|:subseq(919760,100472) 49918 50472 + 495 M 40 120 S 0 2 5 0 2 I 0 84 3 0 2 S 1 1 M 47 141 S 0 1 5 0 2 I 0 102 3 0 2 S 1 2 M 31 93
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-29
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	gene	49919	50472	495	+	.	gene_id 1 ; sequence SPP00001622_2.0 ; gene_orientation +
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	cds	49919	50040	.	+	.	
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	exon	49919	50040	.	+	.	insertions 0 ; deletions 0
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	splice5	50041	50042	.	+	.	intron_id 1 ; splice_site "GT"
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	intron	50041	50128	.	+	.	intron_id 1
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	splice3	50127	50128	.	+	.	intron_id 0 ; splice_site "AC"
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	cds	50129	50271	.	+	.	
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	exon	50129	50271	.	+	.	insertions 0 ; deletions 0
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	splice5	50272	50273	.	+	.	intron_id 2 ; splice_site "GT"
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	intron	50272	50377	.	+	.	intron_id 2
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	splice3	50376	50377	.	+	.	intron_id 1 ; splice_site "AG"
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	cds	50378	50472	.	+	.	
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	exon	50378	50472	.	+	.	insertions 0 ; deletions 0
gi|411115729|gb|JH977834.1|:subseq(919760,100472)	exonerate:protein2genome:local	similarity	49919	50472	495	+	.	alignment_id 1 ; Query SPP00001622_2.0 ; Align 49919 1 120 ; Align 50130 42 141 ; Align 50380 90 93
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
