
genewise output
Score 19.67 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000141_2.0  573 VFTPLEYGCC                                        
                     VFTP   GCC                                        
                     VFTPRSIGCC                                        
gi|406021624|gb 9967 gtacatagtt                                        
                     ttccgctggg                                        
                     attaaatttc                                        


//
>gi|406021624|gb|JH823623.1|:subseq(990477,300000).pep
VFTPRSIGCC
//
>gi|406021624|gb|JH823623.1|:subseq(990477,300000).[9967:9996].sp
GTATTTACTCCAAGATCAATTGGTTGTTGC
//
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	match	9967	9996	19.67	+	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	9967	9996	0.00	+	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
//

genewise output
Score 853.22 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000141_2.0   53 SETLERSPPQ----SPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSS 
                     SE L + PP     SPGPGK G   NRR G VR A + SPPGRRARLS+ 
                     SEILAQPPPSPAKTSPGPGKVGTGSNRRLGGVRAAPMSSPPGRRARLSA 
gi|406021624|g-50000 agacgcccctcgaatcgcgaggagtacccgggcggcattccgccgcctg 
                     gattcaccccccacccgcgatgcgcaggtggtgccctccccgggcgtcc 
                     cacgggggggggggggccgggcccccccgtctcttcgtacggtgtcggc 


SPP00000141_2.0   98 PGPSRSS-EAREELRRHLVGLIERSRVVIFSKSYCPHSTR          
                     PG + SS EAREELRR L GLIE +RV+IFSKSYCPHSTR          
                     PGTNTSSVEAREELRRRLQGLIEGNRVMIFSKSYCPHSTR          
gi|406021624|g-49853 cgaaattgggcggccccccgcaggacgaataaattccaac          
                     cgcaccctacgaatgggtagttagagttttgagagcagcg          
                     gcaccgacactggggctcgcctgcccggcccgcctgccgg          


SPP00000141_2.0  137                        VKELFSSLGVECNVLELDQV       
                                            VKELFSSLGVE N+LELD++       
                                            VKELFSSLGVEYNILELDKI       
gi|406021624|g-49733 GTAGGCT  Intron 1   TAGgagcttttgggtaatgcgaa       
                     <0-----[49733:47230]-0>taattcctgtaaattataat       
                                            gaactttgatattcgattat       


SPP00000141_2.0  157                           DGARVQEVLSEITNQKTVPNIFV 
                                               DGA VQEVLSEITNQ+TVPNIFV 
                               D:D[gat]        DGAAVQEVLSEITNQRTVPNIFV 
gi|406021624|g-47169 GGTAAGTA  Intron 2   TAGATgggggcggctgaaacaagcaatg 
                      <1-----[47168:44941]-1>  agcctaattcatcaagctcattt 
                                               tgcttaatgagcatgagactttg 


SPP00000141_2.0  181 NKVHVGGCDQTFQ                       AYQSGLLQKLLQE 
                     NKVH+GGCD+T+Q                       A+QSGLLQK+LQE 
                     NKVHMGGCDRTLQ                       AHQSGLLQKVLQE 
gi|406021624|g-44869 aagcaggtgcaccGTAATAG  Intron 3   TAGgccagttcagccg 
                     aatatgggagcta<0-----[44830:40632]-0>caaggttaattaa 
                     taatgtatcattg                       atgttaaggctga 


SPP00000141_2.0  207 DL---AYDYDLIIIGGGSGGLSCAK                       E 
                     D     YDYDLI+IGGGSGGLSCAK                       E 
                     DSHEPSYDYDLIVIGGGSGGLSCAK                       E 
gi|406021624|g-40592 gtcgcttgtgcagagggtggcttgaGTATGAA  Intron 4   CAGg 
                     acaaccaaaattttgggcggtcgca<0-----[40517:40280]-0>a 
                     tatatattttctcttttttctattg                       a 


SPP00000141_2.0  230 AAILGKKVMVLDFVVPSPQGTSW                           
                     AAILGKKVMVLDFV+PSP GT+W                           
                     AAILGKKVMVLDFVIPSPHGTTW          G:G[ggt]         
gi|406021624|g-40276 ggatgaagagcgtgactccgaatGGTGAGCT  Intron 5   TAGGT 
                     ccttgaattttatttcccagccg <1-----[40206:38145]-1>   
                     tctgagatggactgcaattcacg                           


SPP00000141_2.0  254 LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQ           
                     LGGTCVNVGCIPKKLMHQAALLGQAL DSRKFGWEYNQQ           
                     LGGTCVNVGCIPKKLMHQAALLGQALHDSRKFGWEYNQQ           
gi|406021624|g-38142 cggatgaggtacaataccggctgcgtcgtaatgtgtacc           
                     tggcgtatggtcaattaaccttgactaacgatggaaaaa           
                     tttgtatactttgaggtatttaaggatcagatcgattaa           


SPP00000141_2.0  293                           RHNWETMTKAIQNHISSLNWGYR 
                                               +HNWETM +AIQN+I SLNWGYR 
                               V:V[gtg]        KHNWETMIEAIQNYIGSLNWGYR 
gi|406021624|g-38025 GGTGAGTA  Intron 6   CAGTGacatgaaaggacatagttatgta 
                      <1-----[38024:28618]-1>  aaagacttactaaatgctaggag 
                                               gccggcgcaatgccactacgtcg 


SPP00000141_2.0  317 LSLREKAVAYVNSYGEFVEHHKIK                       AT 
                     +S+RE AVAY+NSYGEFVEHHK+K                       AT 
                     VSMRENAVAYINSYGEFVEHHKVK                       AT 
gi|406021624|g-28546 gtaagagggtaattggtggccagaGTACTGT  Intron 7   AAGga 
                     tctgaactcatacagattaaaata<0-----[28474:25973]-0>cc 
                     gtgggcagctctccagttatcaag                       ac 


SPP00000141_2.0  343 NKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCIT              
                     N+KGQ TYYTAA+FVIATGERPRYLGIQGDKEYCIT              
                     NRKGQATYYTAAKFVIATGERPRYLGIQGDKEYCIT              
gi|406021624|g-25966 aaagcgattaggatgagaggaccttgacggagttaa              
                     agagaccaacccatttccgagcgatgtagaaaagtc              
                     taaaaattttaaattaaataaagcaacaataacttt              


SPP00000141_2.0  379                           DDLFSLPYCPGKTLVVGASYVAL 
                                               DDLFSLPYCPGKTLVVGASYVAL 
                                S:S[agt]       DDLFSLPYCPGKTLVVGASYVAL 
gi|406021624|g-25858 AGGTAAGAT  Intron 8   CAGTggcttccttcgaatggggttggc 
                       <2-----[25856:22734]-2> aattctcagcgactttgccatct 
                                               tctctgtcctcatatgtattgtg 


SPP00000141_2.0  403 ECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFI 
                     ECAGFLAG+GLDV+VMVRSILLRGFDQEMAEKVGSYME+HGVKFLRKF+ 
                     ECAGFLAGIGLDVSVMVRSILLRGFDQEMAEKVGSYMEEHGVKFLRKFV 
gi|406021624|g-22663 gtggtcggagtggtgagctacccgtgcgaggaggttaggcggattaatg 
                     agcgttcgtgtatctttgctttggtaaatcaatgcataaagtattgatt 
                     atgatttttaatcaaggtacttttttaagagagtccgaatttacaaata 


SPP00000141_2.0  452 PVM                       VQQLEKGSPGKLKVLAKSTEGTE 
                     PVM                       +QQLE GSPGKLKV+AKST+G E 
                     PVM                       IQQLESGSPGKLKVVAKSTDGPE 
gi|406021624|g-22516 cgaGTAAGTC  Intron 9   TAGacccgtgtcgacagggataggcg 
                     ctt<0-----[22507:21057]-0>taatacgccgatattcaccagca 
                     tgg                       tagggacataggaaatactcaaa 


SPP00000141_2.0  478 TIEGVYNT                       VLLAIGRDSCTRKIGLEK 
                     TIEG+YNT                       VLLAIGRDSCTRKIGLEK 
                     TIEGIYNT                       VLLAIGRDSCTRKIGLEK 
gi|406021624|g-20987 aaggataaGTAAGTT  Intron 10  TAGgttgagcgttaaaagtga 
                     ctagtaac<0-----[20963:11530]-0>tttctggacgcgatgtaa 
                     ttaactca                       taaatttcctaaatcggg 


SPP00000141_2.0  504 IGVKINE                          SGKIPVNDVEQTNVPY 
                     I VKINE                          +GKIPVNDVEQTNVPY 
                     ISVKINE           K:K[aag]       NGKIPVNDVEQTNVPY 
gi|406021624|g-11475 aagaaagAAGTAAGTA  Intron 11  TAGGagaacgagggcaagct 
                     tgtataa  <2-----[11452: 8774]-2> agatctaataacatca 
                     ttcactg                          tcaaaattgaactgct 


SPP00000141_2.0  528 VYAVGDILEDKPELTPVAIQSGKLLAQRLFGASLEK              
                     VYA+GDILE KPELTPVAIQ+GKLLA+RLFG  +EK              
                     VYAIGDILEGKPELTPVAIQAGKLLARRLFGGRIEK              
gi|406021624|gb-8724 gtgaggatggacgcacggacggaccgcactggcaga              
                     tactgattagacatcctctacgattcggttgggtaa              
                     ccttgttgaaaaagttacagacggataattactaag              


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>gi|406021624|gb|JH823623.1|:subseq(990477,300000).pep
SEILAQPPPSPAKTSPGPGKVGTGSNRRLGGVRAAPMSSPPGRRARLSAPGTNTSSVEAR
EELRRRLQGLIEGNRVMIFSKSYCPHSTRVKELFSSLGVEYNILELDKIDDGAAVQEVLS
EITNQRTVPNIFVNKVHMGGCDRTLQAHQSGLLQKVLQEDSHEPSYDYDLIVIGGGSGGL
SCAKEAAILGKKVMVLDFVIPSPHGTTWGLGGTCVNVGCIPKKLMHQAALLGQALHDSRK
FGWEYNQQVKHNWETMIEAIQNYIGSLNWGYRVSMRENAVAYINSYGEFVEHHKVKATNR
KGQATYYTAAKFVIATGERPRYLGIQGDKEYCITSDDLFSLPYCPGKTLVVGASYVALEC
AGFLAGIGLDVSVMVRSILLRGFDQEMAEKVGSYMEEHGVKFLRKFVPVMIQQLESGSPG
KLKVVAKSTDGPETIEGIYNTVLLAIGRDSCTRKIGLEKISVKINEKNGKIPVNDVEQTN
VPYVYAIGDILEGKPELTPVAIQAGKLLARRLFGGRIEK
//
>gi|406021624|gb|JH823623.1|:subseq(990477,300000).[50000:8615].sp
AGCGAAATCCTGGCGCAGCCGCCGCCGTCGCCGGCGAAGACGTCGCCGGGCCCCGGGAAG
GTGGGCACCGGCTCCAACCGCCGCCTGGGTGGCGTTCGCGCTGCTCCCATGTCTTCACCC
CCGGGGCGTCGGGCTCGCCTGTCGGCCCCGGGCACAAACACCTCGTCAGTCGAAGCCCGT
GAGGAGCTGCGGCGCCGTCTCCAGGGCCTCATTGAGGGCAACCGCGTGATGATCTTCAGC
AAGAGCTACTGTCCGCACAGCACGCGGGTGAAAGAACTCTTTTCTTCTTTGGGAGTTGAA
TATAATATCTTGGAACTTGATAAAATTGATGATGGGGCCGCTGTTCAAGAAGTTCTGTCA
GAGATCACAAATCAGAGAACGGTACCCAATATTTTTGTGAATAAAGTACATATGGGTGGA
TGTGACCGAACTCTTCAGGCACATCAGAGTGGTTTATTACAGAAGGTCCTTCAGGAAGAT
TCACATGAACCTTCATATGATTATGATCTCATTGTCATTGGTGGTGGTTCTGGTGGCCTT
TCATGTGCTAAGGAAGCTGCCATTTTGGGAAAGAAAGTTATGGTGCTAGACTTTGTGATC
CCATCACCTCATGGCACAACCTGGGGTCTTGGTGGTACGTGTGTAAATGTAGGCTGTATT
CCTAAGAAATTGATGCATCAAGCTGCTCTTTTAGGACAGGCGTTACATGACTCAAGGAAA
TTTGGCTGGGAATATAATCAACAAGTGAAGCACAACTGGGAGACCATGATCGAAGCAATT
CAGAACTACATAGGCTCTTTAAACTGGGGTTACAGGGTGTCTATGAGGGAGAACGCAGTG
GCCTATATCAATTCCTACGGAGAGTTTGTTGAACATCACAAAGTAAAGGCAACCAATAGA
AAAGGACAAGCAACTTATTATACTGCAGCAAAATTTGTTATAGCAACAGGTGAAAGACCA
CGGTACTTAGGAATCCAAGGAGATAAAGAATACTGTATTACTAGTGATGACCTTTTCTCT
CTGCCTTACTGCCCTGGCAAAACTTTAGTTGTGGGTGCATCTTATGTGGCTCTGGAATGT
GCGGGATTTCTTGCTGGTATTGGATTAGATGTCTCAGTAATGGTGCGTTCAATCCTTCTT
CGTGGTTTTGATCAAGAAATGGCAGAGAAAGTGGGTTCCTACATGGAAGAACATGGTGTT
AAATTCTTAAGAAAATTTGTACCTGTGATGATTCAACAGCTGGAGTCAGGCTCACCTGGA
AAGCTGAAAGTAGTAGCTAAATCCACTGACGGACCAGAAACTATTGAAGGAATCTATAAC
ACAGTTTTATTAGCAATTGGTCGTGACTCCTGTACAAGAAAAATTGGCTTGGAGAAGATT
AGTGTCAAAATCAATGAGAAGAATGGCAAAATACCAGTAAATGATGTGGAACAAACCAAT
GTGCCCTATGTCTACGCTATTGGGGATATTTTGGAAGGAAAACCAGAACTGACTCCTGTA
GCCATACAGGCAGGCAAGCTGCTAGCTCGAAGACTTTTTGGAGGCCGTATAGAAAAG
//
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	match	50000	8617	858.21	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	50000	49734	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	49733	47230	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	47229	47169	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	47168	44941	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	44940	44831	0.00	-	2	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	44830	40632	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	40631	40518	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	40517	40280	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	40279	40207	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	40206	38145	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	38144	38025	0.00	-	2	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	38024	28618	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	28617	28475	0.00	-	2	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	28474	25973	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	25972	25857	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	25856	22734	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	22733	22508	0.00	-	1	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	22507	21057	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	21056	20964	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	20963	11530	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	11529	11453	0.00	-	0	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	intron	11452	8774	0.00	-	.	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
gi|406021624|gb|JH823623.1|:subseq(990477,300000)	GeneWise	cds	8773	8617	0.00	-	1	gi|406021624|gb|JH823623.1|:subseq(990477,300000)-genewise-prediction-1
//
