
genewise output
Score 802.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000137_2.0    5 AGQRDYDLLVVGGGSGGLACAKE                           
                     AGQRDYDLLV+GGGSGGLACAKE                           
                     AGQRDYDLLVIGGGSGGLACAKE          A:A[gcc]         
gi|406021651|gb32634 ggccgtgccgagggtggcgtgagGGTATGTG  Intron 1   CAGCC 
                     cgagaaattttgggcggtcgcaa <1-----[32704:49566]-1>   
                     agggctccggttaatccggtcga                           


SPP00000137_2.0   29 AQLGRKVAVVDYVEPSPQ                          TRWGL 
                     AQLG+KVAVVDYVEPSPQ                          T+WGL 
                     AQLGKKVAVVDYVEPSPQ          G:G[ggc]        TKWGL 
gi|406021651|gb49569 gctgaagggggtggctccGGTAGGCA  Intron 2   CAGGCaatgc 
                     catgaatcttaataccca <1-----[49624:50000]-1>  caggt 
                     tggaggatgtttgatcta                          cagcc 


SPP00000137_2.0   53 GGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHD        
                     GGTCVNVGCIPKKLMHQAALLG  IQDA +YGWEV  PV HD        
                     GGTCVNVGCIPKKLMHQAALLGAQIQDAHHYGWEVTHPVQHD        
gi|406021651|gb50018 ggatgaggtacaacaccggccggcacggcctgtggaccgccg        
                     ggcgtatggtcaattaaccttgcataacaaaggatcactaaa        
                     ttctcccccccggggcgacgggcgcatcccccgggccccgtc        


SPP00000137_2.0   95                           RKMAEAVQNHVKSLNWGHRVQLQ 
                                               +KMAEAVQN++KSLNWGHRVQLQ 
                                W:W[tgg]       KKMAEAVQNYIKSLNWGHRVQLQ 
gi|406021651|gb50144 TGGTGAGAG  Intron 3   CAGGaaaggggcataattatgccgccc 
                       <2-----[50146:52319]-2> aatcactaaatactaggagtata 
                                               gagaattgcccacgcggcatgag 


SPP00000137_2.0  119 D                          KVKYFNIKASFVDEHTVCGVAK 
                     D                          KVKY+NIKASFV+EHTVCGV K 
                     D           R:R[aga]       KVKYLNIKASFVNEHTVCGVTK 
gi|406021651|gb52390 gAGGTATGGC  Intron 4   CAGAagatcaaagatgagcagtggaa 
                     a  <2-----[52395:53843]-2> ataatatacgttaaactggtca 
                     c                          acgccccacctctgcggcccaa 


SPP00000137_2.0  143 GGKE                       ILLSADHIIIATGGRPRYPTH  
                       K+                        LLSADHI+IATGGRP+YP H  
                     ADKK                       TLLSADHIVIATGGRPKYPMH  
gi|406021651|gb53911 ggaaGTAAGTG  Intron 5   TAGacctggcagagaggccatcac  
                     caaa<0-----[53923:54570]-0>cttccaatttccgggcaacta  
                     atgg                       tgtgtccaccttaagagccgt  


SPP00000137_2.0  168                        IEGALEYGITSDDIFWLKESPGK    
                                            +EGALEYGITSDDIFW+KESPGK    
                                            VEGALEYGITSDDIFWMKESPGK    
gi|406021651|gb54634 GTGAGTG  Intron 6   TAGggggtgtgaaaggattaagtcga    
                     <0-----[54634:57016]-0>tagctaagtcgaattgtaaccga    
                                            tattggtgtactcacggggctaa    


SPP00000137_2.0  191                           LVVGAS                  
                                               LVVG S                  
                                T:T[acg]       LVVGGS                  
gi|406021651|gb57086 ACGTAAGGC  Intron 7   CAGGtgggga                  
                       <2-----[57088:70035]-2> tttggg                  
                                               ggcccc                  


SPP00000137_2.0  198                           VALECAGFLTGIGLDTTIMMRSI 
                                               VALECAGFL+G+GLDTT+M+RSI 
                               Y:Y[tat]        VALECAGFLSGVGLDTTVMLRSI 
gi|406021651|gb70055 TGTATCCT  Intron 8   CAGATggcgtggtctgggcgaagatcaa 
                      <1-----[70056:71085]-1>  tctagcgttcgtgtacctttggt 
                                               tcggttcctgtgcgccggggctc 


SPP00000137_2.0  222 PLRGFDQ                       QMSSMVIEHMASHGTRFLR 
                     PLRGFDQ                       QMSS+V EHMASHG +FLR 
                     PLRGFDQ                       QMSSLVTEHMASHGIQFLR 
gi|406021651|gb71157 cccgtgcGTAGTGC  Intron 9   CAGcatttgagcagtcgactca 
                     ctggtaa<0-----[71178:77751]-0>atccttcaatccagtattg 
                     cggctcg                       agtcgcggcgatcccgcaa 


SPP00000137_2.0  248 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI           
                     GC PSRVRRLPDG+LQVTWED  +G ED+GTFDTVLWAI           
                     GCTPSRVRRLPDGRLQVTWEDRASGNEDSGTFDTVLWAI           
gi|406021651|gb77809 gtactagaaccggcccgatggcgtgaggtgatgagctga           
                     ggcccgtggtcaggtatcgaagccgaaacgctacttgct           
                     ccacggcgacttcccggcggcattccacactctccggct           


SPP00000137_2.0  287                           RVPDTRSLNLEKAGVDTSPDTQK 
                                               RVP+TRSLNLEKAGV  SPD+QK 
                               G:G[ggc]        RVPETRSLNLEKAGVIISPDSQK 
gi|406021651|gb77926 GGTAAGAG  Intron 10  CAGGCcgcgaaacatgagggaaacgaca 
                      <1-----[77927:93481]-1>  gtcacggtataacgtttgcagaa 
                                               ataacatgtgagtactcctctag 


SPP00000137_2.0  311 ILVDSREATSVPHIYAIGDVVE                       GRPE 
                     ILVD+ EATSVPHIYAIGDV E                       GRPE 
                     ILVDAWEATSVPHIYAIGDVAE                       GRPE 
gi|406021651|gb93553 atgggtggatgccatgagggggGTAGGGA  Intron 11  AAGgccg 
                     tttacgaccctcatactgatca<0-----[93619:96764]-0>ggca 
                     catccgacctgcctcctatgag                       gggg 


SPP00000137_2.0  337 LTPIAIMAGRLLVQRLFGGSSDLMDYDN                      
                     LTP AIMAG+LL QRLFGGSS LM+YDN                      
                     LTPTAIMAGKLLAQRLFGGSSALMEYDN                      
gi|406021651|gb96777 cacagaaggaccgccctggttgtagtgaGTGAGTA  Intron 12    
                     tccccttcgattcagttggcccttaaaa<0-----[96861:97518]  
                     cgcaacgaggtacgtctttcgcggatct                      


SPP00000137_2.0  365    VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGQE VE                
                        VPTTVFTPLEYGCVGLSEEEAVARHGQECVE                
gi|406021651|gb97516 CAGgcaagtaccgtgtggctggggggccgcgtgg                
                     -0>tcccttcctaaggtgtcaaactcgagaagta                
                        tcgacccaggtctgggtgagtgtccaggtgg                


SPP00000137_2.0  396                        VYHAHYKPLEFTVAGRDASQCYVK   
                                            VYHA+YKPLEFTVA RDASQCY+K   
                                            VYHAYYKPLEFTVAERDASQCYIK   
gi|406021651|gb97612 GTAAGTC  Intron 13  CAGgtcgttaccgtagggcggtcttaa   
                     <0-----[97612:99506]-0>taacaaactatctcagaccagata   
                                            cttgctaaggcagtggtacatcag   


SPP00000137_2.0  420                        MVCLREPPQLVLGLHFLGPNAGEVTQ 
                                            +VCLREPPQL+LGLHFLGP+AGEVTQ 
                                            VVCLREPPQLLLGLHFLGPSAGEVTQ 
gi|406021651|gb99579 GTGGGTG  Intron 14  CAGggttagcccctcgtctcgcaggggac 
                     <0-----[99579:99876]-0>ttgtgaccatttgtattgcgcgatca 
                                            ggtgggcggggtcgcctcctaaacta 


SPP00000137_2.0  446 GFALGI                          CGASYAQVMRTVGIHPT 
                     GFALGI                          CGASY Q+MRTVGIHPT 
                     GFALGI           K:K[aag]       CGASYKQLMRTVGIHPT 
gi|406021651|gb99955 gtgcgaAAGTAAGTT  Intron 15  CAGGtggttactacaggacca 
                     gtctgt  <2-----[99975:103011-2> ggccaaattgctgtacc 
                     attgtc                          ttcctgagggagcccca 


SPP00000137_2.0  470 CSEEVVKLRISKRSGLDPTVTGC                           
                     C+EEV KL ISKRSGLDPTVTGC                           
                     CAEEVAKLHISKRSGLDPTVTGC                           
gi|406021651|g103064 tgggggaccatactgtgcagagt                           
                     gcaatcatatcagcgtacctcgg                           
                     ttgggcggtccgcacgcctgacc                           


//
Making a A in phase 1 intron
Making a G in phase 1 intron
Making a W in phase 2 intron
Making a R in phase 2 intron
Making a T in phase 2 intron
Making a Y in phase 1 intron
Making a G in phase 1 intron
Making a K in phase 2 intron
>gi|406021651|gb|JH823596.1|:subseq(1925543,300000).pep
AGQRDYDLLVIGGGSGGLACAKEAAQLGKKVAVVDYVEPSPQGTKWGLGGTCVNVGCIPK
KLMHQAALLGAQIQDAHHYGWEVTHPVQHDWKKMAEAVQNYIKSLNWGHRVQLQDRKVKY
LNIKASFVNEHTVCGVTKADKKTLLSADHIVIATGGRPKYPMHVEGALEYGITSDDIFWM
KESPGKTLVVGGSYVALECAGFLSGVGLDTTVMLRSIPLRGFDQQMSSLVTEHMASHGIQ
FLRGCTPSRVRRLPDGRLQVTWEDRASGNEDSGTFDTVLWAIGRVPETRSLNLEKAGVII
SPDSQKILVDAWEATSVPHIYAIGDVAEGRPELTPTAIMAGKLLAQRLFGGSSALMEYDN
VPTTVFTPLEYGCVGLSEEEAVARHGQECVEVYHAYYKPLEFTVAERDASQCYIKVVCLR
EPPQLLLGLHFLGPSAGEVTQGFALGIKCGASYKQLMRTVGIHPTCAEEVAKLHISKRSG
LDPTVTGC
//
>gi|406021651|gb|JH823596.1|:subseq(1925543,300000).[32634:103132].sp
GCAGGGCAGCGGGACTATGACCTCCTGGTGATTGGTGGAGGATCTGGCGGCCTGGCGTGT
GCCAAGGAAGCCGCTCAGTTGGGAAAGAAGGTAGCTGTGGTTGATTATGTGGAACCTTCC
CCTCAAGGCACCAAATGGGGCCTCGGTGGTACCTGTGTCAACGTCGGCTGCATCCCCAAG
AAGCTGATGCACCAGGCAGCCCTGCTGGGGGCCCAGATCCAAGATGCCCACCACTACGGC
TGGGAGGTGACCCACCCCGTCCAGCATGACTGGAAGAAAATGGCAGAAGCTGTTCAGAAC
TACATCAAATCCTTGAACTGGGGGCACCGAGTTCAGCTACAGGACAGAAAAGTCAAGTAC
CTCAACATCAAAGCCAGCTTTGTCAATGAGCACACGGTGTGCGGCGTCACAAAAGCAGAT
AAGAAGACTCTGCTTTCGGCTGACCACATAGTCATCGCTACTGGAGGACGGCCAAAGTAC
CCCATGCATGTTGAAGGTGCTTTGGAGTATGGGATTACAAGCGATGACATATTCTGGATG
AAGGAGTCCCCTGGAAAAACGTTGGTGGTCGGCGGCAGCTATGTTGCCCTGGAGTGTGCT
GGCTTCCTTTCGGGTGTGGGCCTGGACACCACGGTGATGTTGCGCAGTATCCCCCTGCGG
GGCTTTGACCAGCAAATGTCTTCCTTGGTCACGGAGCACATGGCATCTCACGGCATCCAG
TTCCTAAGAGGCTGCACACCCTCGAGGGTCAGGAGACTCCCTGATGGCCGCCTCCAGGTG
ACCTGGGAGGACCGAGCTTCTGGCAACGAAGACTCAGGCACTTTCGATACCGTCCTGTGG
GCCATTGGCCGAGTTCCAGAAACCAGAAGTCTGAATTTGGAAAAGGCTGGAGTCATTATC
AGCCCTGACAGTCAAAAGATCTTAGTTGACGCCTGGGAAGCCACCTCTGTGCCCCACATT
TACGCCATTGGAGATGTGGCAGAGGGGCGGCCGGAGCTCACGCCCACAGCAATCATGGCA
GGGAAGCTTCTAGCCCAGCGTCTCTTTGGTGGTTCCTCGGCCTTGATGGAATATGACAAT
GTTCCCACGACAGTCTTCACCCCACTGGAGTATGGCTGTGTGGGGCTGTCTGAGGAAGAG
GCTGTGGCTCGCCACGGACAGGAGTGTGTGGAGGTCTATCATGCGTACTATAAACCACTG
GAGTTCACAGTGGCTGAGCGGGATGCATCCCAATGTTACATAAAGGTGGTGTGTTTGAGG
GAGCCCCCGCAGCTGTTGCTTGGCTTGCACTTCCTTGGCCCCAGTGCAGGAGAAGTCACT
CAAGGATTTGCTCTGGGTATCAAGTGTGGTGCCTCCTATAAGCAATTGATGCGGACAGTG
GGCATCCACCCCACATGTGCTGAGGAGGTGGCCAAGCTGCATATCTCCAAGCGCTCAGGC
TTGGACCCCACTGTGACAGGCTGC
//
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	match	32634	103132	802.92	+	.	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	cds	32634	32703	0.00	+	0	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	intron	32704	49566	0.00	+	.	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	cds	49567	49623	0.00	+	2	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	intron	49624	50000	0.00	+	.	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	cds	50001	50145	0.00	+	2	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	intron	50146	52319	0.00	+	.	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	cds	52320	52394	0.00	+	1	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,300000)	GeneWise	intron	52395	53843	0.00	+	.	gi|406021651|gb|JH823596.1|:subseq(1925543,300000)-genewise-prediction-1
gi|406021651|gb|JH823596.1|:subseq(1925543,3