
genewise output
Score 21.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000129_2.0  238 WKVEETVK---HDWDRMIEAVQNHIGSLNWGYRVALREKKVVYEN     
                     W +EET+K      D     +   +  LN  ++ + RE K  Y+N     
                     WMLEETLKLALQRRDAKANGINQEVQDLNRKFQTSAREDKAQYDN     
gi|406021476|gb89297 tatggacacgcccaggagagaacggcgcaaatcatgcggagctga     
                     gttaactatctaggacacagtaaataatagatacccgaaacaaaa     
                     ggaagagattcgtattaataatggaacgcaataaataatacatcc     


//
>gi|406021476|gb|JH823771.1|:subseq(5092,300000).pep
WMLEETLKLALQRRDAKANGINQEVQDLNRKFQTSAREDKAQYDN
//
>gi|406021476|gb|JH823771.1|:subseq(5092,300000).[89297:89431].sp
TGGATGTTAGAAGAGACACTGAAACTTGCTCTCCAGCGTAGAGATGCTAAAGCAAATGGA
ATAAATCAGGAGGTACAAGACCTGAACAGAAAATTTCAAACATCAGCTCGAGAAGATAAA
GCCCAATATGACAAC
//
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	match	89297	89431	23.57	+	.	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-1
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	cds	89297	89431	0.00	+	0	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-1
//

genewise output
Score 720.06 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000129_2.0   59 LQAYIDGHSVVIFSRSTCTRCTEVKKLFKSLCVPYFVLELDQTEDGRAL 
                     L   I+G+ ++IFS++ C   T VK LF SL V Y  L+LDQ +DG  + 
                     LLGLIEGNGMMIFSKNYCLHSTWVKXLFSSLGVEYNSLQLDQIDDGPTV 
gi|406021476|g-50000 ccgcaggagaaataaattccaatgattttttgggtaatccgcagggcag 
                     ttgttagagttttgaaagtagcgtaattcctgtaaagtataataagcct 
                     cgcctgcccggcccgcttgccaggaaatttgatattcaattatttgctt 


SPP00000129_2.0  108 EGTLSELAAETDLPVVFVKQRKIGGHGPTLKAYQEGRLQKLLKMNGPED 
                     +  LSE+  +  +  +FV +  +GG   TL+A+Q G LQK+ + +  E  
                     QEVLSEINNQKTVANIFVNKVHMGGCNRTLQAHQSGLLQKVFQEDSHEP 
gi|406021476|g-49853 cggctgaaacaaggaatgaagcaggtaaaccgccagttcagtcggtcgc 
                     aattcataaaactcatttaatatgggagctacaaggttaattaaacaac 
                     aatgagctcgagactttgtaatgtatcattgatgttaaggctgatatat 


SPP00000129_2.0  157 LPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGL 
                        SYDYD I+IGG  G L  AKE A  G  VMVLDFV P+P GT WGL 
                     ---SYDYDRIVIGGDFGALLCAKEVAILGNIVMVLDFVIPSPHGTSWGL 
gi|406021476|g-49706    ttgtgcagagggtggcttgagggatgaagagcgtgactccgattgc 
                        caaaagtttggatgcttgcaatcttgatttttatttcccagccggt 
                        attttctcttttttctgttgatctgacatggactgcaattcacgtt 


SPP00000129_2.0  206 GGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEA 
                     GGTCVN+GCIPKKLMHQ A+LG  L DSR +GW+  + VK++ + MI+A 
                     GGTCVNIGCIPKKLMHQTAILGXVLHDSRKFGWEYNQQVKYNXETMIKA 
gi|406021476|g-49568 ggatgaagtacaataccagatgtgtcgtaatgtgtaccgatatgaaaag 
                     ggcgtatggtcaattaaccttgattaacgatggaaaaataaagacttac 
                     ttctataccttgaggtatttaaggatcagatcgattaaggccagcgaaa 


SPP00000129_2.0  255 VQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYS 
                     +QN+IGSLN GYR+++ E  V Y N+YG+FI  H++KATN KG    Y  
                     IQNNIGSLNRGYRLSI-E!TVAYTNSYGKFIEHHKVKATNRKGXATYYI 
gi|406021476|g-49421 acaaagttaagtacta g1aggtaattgatagccagagaaaagtgatta 
                     taaatgctaggagtct a ctcacacagattaaaataccagagaccaat 
                     taccattatgtcgcta a tgctctctaattatcaagactaaaaatttt 


SPP00000129_2.0  304 AERFLIATGERPRYLGIPGDKEYCISSDDLFSLPYCPGKTLVVGASYVA 
                     A +F+IATGERP+YLGI   KEYCI+SDDLFSLPYCPGKTLVVGASYVA 
                     AAKFVIATGERPQYLGIQRYKEYCITSDDLFSLPYCPGKTLVVGASYVA 
gi|406021476|g-49279 ggatgagaggaccttgacatagttaaaggcttccttcgaatggggttgg 
                     ccatttccgagcaatgtagaaaagtcgaattctcagcgactttgccatc 
                     aaatcaaataaagtaacaataactttttctctgtcctcatatgtattgt 


SPP00000129_2.0  353 LECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQF 
                     L+CAGFLAGIGLDV+VMVRSILL  FDQ+MA K+G +ME+HG+KF+R++ 
                     LKCAGFLAGIGLDVSVMVRSILLHDFDQEMAEKVGSYMEQHGVKFLRKI 
gi|406021476|g-49132 catggtcggagtggtgagctacccgtgcgaggaggttagccggattaaa 
                     tagcgttcgtgtatctttgctttaataaatcaatgcataaagtattgat 
                     gataatttcttatcaaggcacttttttaagagagtccgaatttacaaat 


SPP00000129_2.0  402 VPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKI 
                     VP+ + Q+E+G+PG+L+VVA+S +  E IEG YNT++LAIGR++CTRKI 
                     VPVMIXQLESGSPGKLKVVAKSIDRLETIEGIYNTLLLAIGRNSCTRKI 
gi|406021476|g-48985 gcgaatccgtgtcgacagggatagacgaaggataactcgagcattaaaa 
                     tctttaatacgccgatattcactagtactagtaactttctggacgcgat 
                     atggtagggacataggaagtactcaaattaactcttaaatctcctaaat 


SPP00000129_2.0  451 GLETVGVKINEKTGKIPVTDEEQTNVPYI                     
                     GLE + VKINEK GKIPV D EQTNVP +                     
                     GLEKISVKINEKNGKIPVNDVEQTNVPLL                     
gi|406021476|g-48838 gtgaaagaaagaagaacgagggcaagctt                     
                     gtaatgtataaaagatctaataacatctt                     
                     cgggttcactggtcaaaattgaactgtgg                     


SPP00000129_2.0  480                           AIGDILEDKVELTPVAIQAGRLL 
                                               ++GDILE K EL PVAIQAG+LL 
                                Y:F[ttc]       SFGDILEGKPELAPVAIQAGKLL 
gi|406021476|g-48751 TTGTTGTTG  Intron 1   GAGCttggatggacgcgcggacggacc 
                       <2-----[48749:48572]-2> ctgattagacatcctctacgatt 
                                               ctgttgaaaaacttacagaagga 


SPP00000129_2.0  504 AQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVY 
                      QRL+ G   KC Y NVPTT+FTPLEY  CGLSEEKA+E +G+ N+EVY 
                     VQRLFGGHIEKCYYSNVPTTIFTPLEYSCCGLSEEKAIEVYGKXNLEVY 
gi|406021476|g-48501 gcactggcagatttaagcaaatactgtattgttggagaggtgatacggt 
                     tagttggataagaagatcccttcctaaggggtcaaactatagaaatata 
                     taattactaagttttttataatatggctctaatagattaacaagtcaat 


SPP00000129_2.0  553 HSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQG 
                     H+ FWPLEWT+  RDNN CYAKI  N +DN+RVVGFH+LGPNA EV+QG 
                     HTLFWPLEWTVVGRDNNTCYAKINYNRRDNDRVVGFHILGPNADEVSQG 
gi|406021476|g-48354 catttccgtagggagaaattgaaataacgagcgggtcacgcaggggtcg 
                     acttgctagcttggaaacgacataaaggaaagttgtattgcacaatcag 
                     ttgcgttggaatcaccttttaaacctatctcgaaattttaatttatcaa 


SPP00000129_2.0  602 FAAALKCGLTKKQLDSTIGIHPVCAEVFTTLSVTKRSGASILQAGC    
                     FAAA+KCGLTK  LD TIGIHPVC E+ T L +TK SG +I Q GC    
                     FAAAMKCGLTKLLLDDTIGIHPVCGEIVTRLEITKSSGLAITQKGC    
gi|406021476|g-48207 tgggaatgcaatccggaagaccgtggagaatgaaattgcgaacagt    
                     tccctaggtcatttaactgtactggattcgtatcaccgtctcaagg    
                     tatagatttaagattcctatttatggacaaggcagagagtctgatc    


//
Making a F in phase 2 intron
>gi|406021476|gb|JH823771.1|:subseq(5092,300000).pep
LLGLIEGNGMMIFSKNYCLHSTWVKXLFSSLGVEYNSLQLDQIDDGPTVQEVLSEINNQK
TVANIFVNKVHMGGCNRTLQAHQSGLLQKVFQEDSHEPSYDYDRIVIGGDFGALLCAKEV
AILGNIVMVLDFVIPSPHGTSWGLGGTCVNIGCIPKKLMHQTAILGXVLHDSRKFGWEYN
QQVKYNXETMIKAIQNNIGSLNRGYRLSIEXTVAYTNSYGKFIEHHKVKATNRKGXATYY
IAAKFVIATGERPQYLGIQRYKEYCITSDDLFSLPYCPGKTLVVGASYVALKCAGFLAGI
GLDVSVMVRSILLHDFDQEMAEKVGSYMEQHGVKFLRKIVPVMIXQLESGSPGKLKVVAK
SIDRLETIEGIYNTLLLAIGRNSCTRKIGLEKISVKINEKNGKIPVNDVEQTNVPLLFSF
GDILEGKPELAPVAIQAGKLLVQRLFGGHIEKCYYSNVPTTIFTPLEYSCCGLSEEKAIE
VYGKXNLEVYHTLFWPLEWTVVGRDNNTCYAKINYNRRDNDRVVGFHILGPNADEVSQGF
AAAMKCGLTKLLLDDTIGIHPVCGEIVTRLEITKSSGLAITQKGC
//
>gi|406021476|gb|JH823771.1|:subseq(5092,300000).[50000:49369].sp
CTCCTGGGCCTCATTGAGGGCAACGGCATGATGATCTTCAGCAAGAACTATTGTCTGCAC
AGCACATGGGTGAAATAATTATTTTCTTCTTTGGGAGTTGAATATAATAGCTTACAACTT
GATCAAATTGATGATGGGCCCACTGTTCAAGAAGTTCTGTCAGAGATCAATAACCAGAAA
ACGGTAGCCAATATTTTTGTGAATAAAGTACATATGGGTGGATGTAACAGAACTCTTCAG
GCACATCAGAGTGGTTTATTACAGAAGGTCTTTCAGGAAGATTCACATGAACCTTCATAT
GATTATGATCGCATTGTCATTGGTGGTGATTTTGGTGCCCTTTTGTGTGCTAAGGAAGTT
GCCATTTTGGGAAACATAGTTATGGTGCTAGACTTTGTGATCCCATCACCTCATGGCACA
TCCTGGGGTCTTGGTGGTACCTGTGTAAATATAGGCTGCATTCCTAAGAAATTGATGCAT
CAAACTGCTATTTTAGGATAGGTGTTACATGACTCAAGGAAATTTGGCTGGGAATATAAT
CAACAAGTGAAGTACAACTGAGAGACCATGATAAAAGCAATTCAAAACAACATAGGTTCT
TTAAATAGGGGTTACAGGCTCTCTATAGAA
>gi|406021476|gb|JH823771.1|:subseq(5092,300000).[49369:48068].sp
ACTGTGGCCTATACCAATTCCTATGGAAAATTTATTGAACATCACAAAGTAAAGGCAACC
AATAGAAAAGGATAAGCAACTTATTATATTGCAGCAAAATTTGTCATAGCAACAGGTGAA
AGACCACAGTATTTAGGAATCCAAAGATATAAAGAATACTGTATTACTAGTGATGACCTT
TTCTCTCTGCCTTACTGCCCTGGCAAAACTTTAGTTGTGGGTGCATCTTATGTGGCTCTG
AAATGTGCAGGATTTCTTGCTGGCATTGGTTTAGATGTCTCAGTAATGGTGCGCTCAATC
CTTCTTCATGATTTTGATCAAGAAATGGCAGAGAAAGTGGGTTCCTACATGGAACAACAT
GGTGTTAAATTCTTAAGAAAAATTGTACCTGTGATGATTTAACAGCTGGAGTCAGGCTCA
CCTGGAAAGCTGAAAGTAGTGGCTAAATCCATTGACAGACTAGAAACTATTGAAGGAATC
TATAACACTCTTTTACTAGCAATTGGCCGTAACTCCTGTACAAGAAAAATTGGCTTGGAG
AAGATTAGTGTCAAAATCAATGAGAAGAATGGCAAAATACCAGTAAATGATGTGGAACAA
ACCAATGTGCCTTTGTTGTTCTCCTTTGGGGATATTTTGGAAGGAAAACCAGAACTCGCT
CCTGTAGCCATACAGGCAGGAAAGCTGCTAGTTCAAAGACTTTTTGGAGGCCATATAGAA
AAGTGTTATTATAGTAATGTTCCAACTACAATATTTACACCTTTGGAGTACAGTTGCTGT
GGATTATCTGAAGAGAAAGCTATTGAAGTATACGGAAAATAGAATCTCGAAGTATATCAT
ACTTTGTTCTGGCCTCTTGAGTGGACAGTAGTTGGCAGAGACAACAATACTTGTTATGCA
AAAATAAACTACAATAGACGTGACAATGACCGGGTAGTAGGATTTCATATTCTTGGACCA
AATGCTGATGAAGTTTCCCAAGGATTTGCAGCTGCAATGAAATGTGGTCTTACAAAATTG
CTACTTGATGACACCATTGGAATTCATCCTGTATGTGGGGAGATAGTCACAAGATTGGAG
ATCACAAAGTCATCGGGACTGGCTATCACTCAGAAAGGTTGC
//
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	match	50000	49371	163.13	-	.	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-1
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	cds	50000	49371	0.00	-	0	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-1
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	match	49369	48070	558.93	-	.	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-2
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	cds	49369	48750	0.00	-	0	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-2
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	intron	48749	48572	0.00	-	.	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-2
gi|406021476|gb|JH823771.1|:subseq(5092,300000)	GeneWise	cds	48571	48070	0.00	-	1	gi|406021476|gb|JH823771.1|:subseq(5092,300000)-genewise-prediction-2
//
