
genewise output
Score 16.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000127_2.0   24 RIVVEYCEPC                                        
                     R+VV  C+PC                                        
                     RLVVLNCQPC                                        
gi|406021984|g242805 ccggtatcct                                        
                     gttttagacg                                        
                     gggtaccatc                                        


//
>gi|406021984|gb|JH823263.1|:subseq(24901297,300000).pep
RLVVLNCQPC
//
>gi|406021984|gb|JH823263.1|:subseq(24901297,300000).[242805:242834].sp
CGGCTGGTGGTTTTAAACTGCCAACCTTGC
//
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	match	242805	242834	16.99	+	.	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	cds	242805	242834	0.00	+	0	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
//

genewise output
Score 206.39 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000127_2.0    1 MSGEPGQTSVAPPPEEVEPGSGVRIVVEY                     
                     M+GE G  S+APPP EVEPGSGVRIVVEY                     
                     MNGERGPISLAPPPGEVEPGSGVRIVVEY                     
gi|406021984|g-50190 aaggcgcattgcccggggcgaggcagggt                     
                     tagaggctctccccgatacgggtgtttaa                     
                     gcgggggacagctcggcagctgcccgagc                     


SPP00000127_2.0   30                           EPCGFEATYLELASAVKEQYPGI 
                                               EPCGFEATYLELASAVKEQYPGI 
                                C:C[tgt]       EPCGFEATYLELASAVKEQYPGI 
gi|406021984|g-50103 TGGTGAGCA  Intron 1   CAGTgctgtggatcgcgaggagctcga 
                       <2-----[50101:50002]-2> acggtaccatatcgctaaaacgt 
                                               actccggccggggtaggagttcc 


SPP00000127_2.0   54 EIESRLGGT                          AFEIEINGQLVFSK 
                     EIESRLGGT                          AFEIEINGQL+FSK 
                     EIESRLGGT          G:G[ggg]        AFEIEINGQLIFSK 
gi|406021984|g-49931 gagtccggaGGTGAGGC  Intron 2   CAGGGgtgagaagccatta 
                     atacgtggc <1-----[49903:49504]-1>  ctatatagatttca 
                     gtggcggaa                          ctgcgctaggatcg 


SPP00000127_2.0   78 LENGGFPYEKD                       LIEAIRRASNGETLE 
                     LENGGFPYEKD                       L++AIRRASNGE +E 
                     LENGGFPYEKD                       LMDAIRRASNGEPIE 
gi|406021984|g-49459 cgaggtctgagGTGAGTA  Intron 3   TAGcaggacagaaggcag 
                     taaggtcaaaa<0-----[49426:49344]-0>ttactggcgagacta 
                     agtgctttgat                       cgttcaacttagtaa 


SPP00000127_2.0  104 KITNSRPPCVIL                                      
                     KITNSRPPCVIL                                      
                     KITNSRPPCVIL                                      
gi|406021984|g-49298 aaaaaccctgac                                      
                     atcaggccgttt                                      
                     gccctttccccg                                      


//
Making a C in phase 2 intron
Making a G in phase 1 intron
>gi|406021984|gb|JH823263.1|:subseq(24901297,300000).pep
MNGERGPISLAPPPGEVEPGSGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG
GTGAFEIEINGQLIFSKLENGGFPYEKDLMDAIRRASNGEPIEKITNSRPPCVIL
//
>gi|406021984|gb|JH823263.1|:subseq(24901297,300000).[50190:49261].sp
ATGAACGGGGAGCGGGGGCCGATATCCTTAGCGCCCCCTCCCGGGGAGGTCGAACCGGGC
AGTGGGGTCCGCATCGTGGTAGAGTACTGTGAACCCTGTGGCTTCGAGGCGACCTACCTG
GAGCTGGCGAGTGCAGTGAAGGAACAGTATCCTGGCATCGAGATTGAGTCGCGCCTGGGG
GGAACAGGGGCCTTTGAGATCGAGATCAATGGACAGCTGATATTTTCCAAGCTAGAGAAT
GGGGGCTTTCCTTATGAGAAAGATCTCATGGATGCTATCCGAAGAGCCAGTAATGGAGAG
CCTATAGAAAAGATCACCAACAGTCGTCCTCCCTGCGTCATCCTG
//
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	match	50190	49263	206.39	-	.	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	cds	50190	50102	0.00	-	0	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	intron	50101	50002	0.00	-	.	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	cds	50001	49904	0.00	-	1	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	intron	49903	49504	0.00	-	.	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	cds	49503	49427	0.00	-	2	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	intron	49426	49344	0.00	-	.	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
gi|406021984|gb|JH823263.1|:subseq(24901297,300000)	GeneWise	cds	49343	49263	0.00	-	0	gi|406021984|gb|JH823263.1|:subseq(24901297,300000)-genewise-prediction-1
//
