
genewise output
Score 315.82 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000116_2.0   17 RESGSREPGLAAAAMSTVDLARVGACILKHAVTGE               
                     ++ GS   G  AAAMS +DLARVGAC+LK+AVTGE               
                     KQLGSWSQGQEAAAMSALDLARVGACVLKNAVTGE               
gi|406021818|gb29827 actgattcgcggggaagcgcgcgggtgcaaggagg               
                     aatgggcagaaccctgctatcgtgcgttaactcga               
                     ggaccgggagggacgcggcgcggcgcgggcggcag               


SPP00000116_2.0   52                        AVELRSLWREHACVVAGLRRFGCVVC 
                                            AVELRSLW+E  CVV+GLRRFGC+VC 
                                            AVELRSLWQEQTCVVSGLRRFGCMVC 
gi|406021818|gb29932 GTGAGGA  Intron 1   CAGgggccactcgcatggtgccctgtagt 
                     <0-----[29932:30122]-0>ctatggtgaaacgttcgtggtggttg 
                                            cggagcggggggcggcaggttccggc 


SPP00000116_2.0   78 RWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGDYFAG        
                     RWI++DLSSL GLLDQH VRLVGVGPE +GLQEFLDG YFAG        
                     RWISRDLSSLKGLLDQHNVRLVGVGPETVGLQEFLDGGYFAG        
gi|406021818|gb30201 ctatcgcaacagccgccagccggggcgaggccgttgggttgg        
                     ggtcgatggtagttaaaatgttgtgcactgtaattaggatcg        
                     cgccgcccccggcgcgccgcggcggcgcgtggacgtccccga        


SPP00000116_2.0  120                           LYLDESKQLYKELGFK        
                                               LYLDE+KQ YKELGFK        
                               E:E[gag]        LYLDETKQFYKELGFK        
gi|406021818|gb30327 GGTGGGCA  Intron 2   CAGAGctcggaacttagcgta        
                      <1-----[30328:31120]-1>  tataacaataaatgta        
                                               ctgtgcggccgggccg        


SPP00000116_2.0  137                           YNSLSILPAALGKPVRDVAAK   
                                               YNSLSIL AALGKPVRDVAAK   
                                R:R[cgg]       YNSLSILSAALGKPVRDVAAK   
gi|406021818|gb31171 CGGTGTGTG  Intron 3   CAGGtaacaactggcgacgagggga   
                       <2-----[31173:31824]-2> aagtgttccctgactgatcca   
                                               cccgtcgctcaggaggtgccg   


SPP00000116_2.0  159                        AKAVGIQGNLSGDLLQSGGLLVVSK  
                                            AKA  IQGNLSGDLLQSGGLLVVS+  
                                            AKAANIQGNLSGDLLQSGGLLVVSR  
gi|406021818|gb31889 GTTGGTG  Intron 4   CAGgaggaacgactggctcaggccggaa  
                     <0-----[31889:31985]-0>caccatagatcgattagggttttgg  
                                            cgtcccgacgtgcaggtaggggcca  


SPP00000116_2.0  184                           GDKVLLHFVQKSPGDYVPKEHIL 
                                               G+KVLLHFVQKSPGDYV  E +L 
                               G:G[ggt]        GEKVLLHFVQKSPGDYVTNERLL 
gi|406021818|gb32061 GGTAAGGA  Intron 5   CAGGTggagccctgcatcggtgaagacc 
                      <1-----[32062:32456]-1>  gaatttattaaccgaatcaagtt 
                                               tggaagctcggcagcttctgact 


SPP00000116_2.0  208 QVLGISAEVCASDPPQ                                  
                     Q+LGISAE  AS+PPQ                                  
                     QILGISAEGHASEPPQ                                  
gi|406021818|gb32528 cacgatgggcgagccc                                  
                     attgtccagacgacca                                  
                     gcgcctagctccggcg                                  


//
Making a E in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|406021818|gb|JH823429.1|:subseq(2559807,300000).pep
KQLGSWSQGQEAAAMSALDLARVGACVLKNAVTGEAVELRSLWQEQTCVVSGLRRFGCMV
CRWISRDLSSLKGLLDQHNVRLVGVGPETVGLQEFLDGGYFAGELYLDETKQFYKELGFK
RYNSLSILSAALGKPVRDVAAKAKAANIQGNLSGDLLQSGGLLVVSRGGEKVLLHFVQKS
PGDYVTNERLLQILGISAEGHASEPPQ
//
>gi|406021818|gb|JH823429.1|:subseq(2559807,300000).[29827:32575].sp
AAGCAGTTAGGCAGCTGGTCGCAGGGACAGGAGGCGGCAGCCATGAGCGCGCTGGACCTG
GCCCGGGTGGGCGCGTGCGTGCTGAAGAACGCGGTGACCGGAGAGGCCGTGGAGCTACGG
AGCCTGTGGCAGGAGCAGACGTGCGTGGTGTCCGGACTGCGGCGTTTTGGCTGCATGGTG
TGCCGCTGGATCTCCCGGGACCTCAGCAGCCTCAAGGGGCTCCTGGACCAGCACAACGTG
CGCCTGGTGGGCGTGGGGCCCGAGACCGTGGGTCTGCAGGAATTCTTGGATGGCGGCTAC
TTCGCGGGAGAGCTCTATCTGGATGAGACCAAGCAGTTCTACAAGGAGCTGGGCTTCAAG
CGGTACAACAGCCTGAGTATCCTGTCCGCTGCCCTAGGGAAGCCAGTGAGGGATGTGGCC
GCCAAGGCCAAGGCTGCCAACATCCAGGGAAACCTGTCTGGGGACCTATTGCAGAGTGGA
GGGCTGCTGGTGGTCAGCAGAGGTGGTGAGAAGGTACTACTGCACTTTGTCCAGAAGTCC
CCAGGGGACTATGTTACCAATGAGAGACTCCTTCAGATCCTGGGCATCTCTGCAGAGGGC
CATGCCAGCGAGCCGCCCCAG
//
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	match	29827	32575	315.82	+	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	29827	29931	0.00	+	0	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	intron	29932	30122	0.00	+	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	30123	30327	0.00	+	0	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	intron	30328	31120	0.00	+	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	31121	31172	0.00	+	2	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	intron	31173	31824	0.00	+	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	31825	31888	0.00	+	1	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	intron	31889	31985	0.00	+	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	31986	32061	0.00	+	0	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	intron	32062	32456	0.00	+	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	32457	32575	0.00	+	2	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
//

genewise output
Score 18.74 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000116_2.0  197 PGDYVPKEHIL                                       
                     PG Y PK H+L                                       
                     PGHYGPKSHML                                       
gi|406021818|g-39056 cgctgcatcat                                       
                     cgaagcacatt                                       
                     tgttcgactgg                                       


//
>gi|406021818|gb|JH823429.1|:subseq(2559807,300000).pep
PGHYGPKSHML
//
>gi|406021818|gb|JH823429.1|:subseq(2559807,300000).[39056:39022].sp
CCTGGGCATTATGGCCCGAAATCCCATATGTTG
//
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	match	39056	39024	18.74	-	.	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
gi|406021818|gb|JH823429.1|:subseq(2559807,300000)	GeneWise	cds	39056	39024	0.00	-	0	gi|406021818|gb|JH823429.1|:subseq(2559807,300000)-genewise-prediction-1
//
