
genewise output
Score 20.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000106_2.0  135 LSNMIENQCMSTGAFEITLNDVPVWSK                       
                     +S+ +E +  ++GA  +  N VPVW K                       
                     VSSGVELRVGTSGATNLGANVVPVWRK                       
gi|406021878|g197909 gttgggccggatggaacggaggcgtaa                       
                     tccgtatgtgccgccatgcattctgga                       
                     ccacgagattacgttccgctatgtgaa                       


//
>gi|406021878|gb|JH823369.1|:subseq(10871660,278306).pep
VSSGVELRVGTSGATNLGANVVPVWRK
//
>gi|406021878|gb|JH823369.1|:subseq(10871660,278306).[197909:197989].sp
GTCTCCTCAGGCGTGGAACTGCGAGTTGGTACATCCGGGGCTACTAACCTCGGGGCCAAT
GTAGTTCCGGTTTGGAGAAAA
//
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	match	197909	197989	20.00	+	.	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	cds	197909	197989	0.00	+	0	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
//

genewise output
Score 379.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000106_2.0    1 MRLLLLLLVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLL+AASA+VRSEASANLG VPSKRLKMQYATGPLLKFQI     
                     MRLLLLLLIAASAVVRSEASANLGTVPSKRLKMQYATGPLLKFQI     
gi|406021878|-120000 aactccccaggtgggcaggtgacgagcaaataactgagcccatca     
                     tgtttttttccccttggacccatgctcgagtataaccgcttatat     
                     ggtggtcgagggggcgcgcgccgccgccgaaggactggggaacgt     


SPP00000106_2.0   46                           VSXGYRRVFEEYMRVISQRYPDI 
                                               VSXGYRRVFEEYMRVISQRYPDI 
                                C:C[tgt]       VSXGYRRVFEEYMRVISQRYPDI 
gi|406021878|-119865 TGGTAAGTA  Intron 1   CAGTgttgtacgtggtacgaacctcga 
                       <2-----[119863:99748-2> tcggaggttaaatgttgagacat 
                                               tcattgggtggcggttcggcacc 


SPP00000106_2.0   70 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSVFK 
gi|406021878|g-99677 cagggatccccatAGGTAAGTA  Intron 2   TAGAcagttctgta 
                     gtagaaatcacta  <2-----[99636:98831]-2> atccttctta 
                     ctaagtccaaaat                          caatcgacca 


SPP00000106_2.0   94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
gi|406021878|g-98799 tgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacaattcgttttctcgattccgggcaatg                  


SPP00000106_2.0  126                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
gi|406021878|g-98703 GTATGTA  Intron 3   TAGgtgtaagtttaaaagactataggtga 
                     <0-----[98703:97301]-0>tacgttttttgattaaagtccgctat 
                                            ctatggtccgccgtacgtgaatatga 


SPP00000106_2.0  152 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
gi|406021878|g-97222 ataGGTGGGTT  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[97212:94680]-1>  tctgcatacgatcctaatta 
                     cat                          atagtggatactacgagtta 


SPP00000106_2.0  176 ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDSIPHHRS                              
gi|406021878|g-94617 acgagaacagcagtacccct                              
                     ttaaatatatatactcaagc                              
                     ttctaggctgtgtacattaa                              


//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>gi|406021878|gb|JH823369.1|:subseq(10871660,278306).pep
MRLLLLLLIAASAVVRSEASANLGTVPSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMR
VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE
MKLNVHMDSIPHHRS
//
>gi|406021878|gb|JH823369.1|:subseq(10871660,278306).[120000:94556].sp
ATGAGGCTTTTGCTGCTTCTCCTGATAGCGGCGTCGGCGGTGGTCCGGAGCGAGGCCTCG
GCCAACCTGGGCACCGTGCCCAGCAAGAGATTAAAGATGCAATACGCTACGGGGCCGCTG
CTAAAATTCCAGATTTGTGTTTCCTGAGGTTATAGGCGGGTGTTTGAGGAGTACATGCGG
GTTATTAGCCAGCGGTACCCAGACATCCGCATTGAAGGAGAGAATTACCTCCCACAACCA
ATATATAGACACATAGCATCTTTCCTGTCAGTCTTCAAATTAGTATTAATAGGCTTAATA
ATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGCATGCAAGCTCCTAGCATCTGGCAGTGG
GGCCAAGAAAATAAGGTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAA
AACCAGTGTATGTCAACAGGTGCATTTGAGATAACCTTAAATGATGTACCTGTATGGTCT
AAGCTGGAATCTGGACACCTTCCATCCATGCAACAGCTTGTTCAAATTCTTGACAATGAA
ATGAAGCTCAATGTGCATATGGATTCAATCCCACATCATCGATCA
//
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	match	120000	94558	379.65	-	.	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	cds	120000	119864	0.00	-	0	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	intron	119863	99748	0.00	-	.	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	cds	99747	99637	0.00	-	1	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	intron	99636	98831	0.00	-	.	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	cds	98830	98704	0.00	-	1	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	intron	98703	97301	0.00	-	.	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	cds	97300	97213	0.00	-	0	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	intron	97212	94680	0.00	-	.	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
gi|406021878|gb|JH823369.1|:subseq(10871660,278306)	GeneWise	cds	94679	94558	0.00	-	2	gi|406021878|gb|JH823369.1|:subseq(10871660,278306)-genewise-prediction-1
//
