
genewise output
Score 22.19 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000100_2.0  173 ACSWRPGRRGPSSGGXG                                 
                     AC WR    GP  GG G                                 
                     ACGWRASSLGPLLGGEG                                 
gi|406021807|g175985 gtgtcgttcgcccgggg                                 
                     cggggccctgcttggag                                 
                     ctgggtcaaatgcatgt                                 


//
>gi|406021807|gb|JH823440.1|:subseq(3517146,300000).pep
ACGWRASSLGPLLGGEG
//
>gi|406021807|gb|JH823440.1|:subseq(3517146,300000).[175985:176035].sp
GCCTGTGGGTGGCGGGCTTCCTCACTAGGACCTCTGCTCGGAGGTGAGGGT
//
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	match	175985	176035	22.19	+	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	175985	176035	0.00	+	0	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
//

genewise output
Score 288.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000100_2.0    1 MERQEESLSARPALETEGLRFLHTT                         
                     MER  E LSARPALETEGLRFLH T                         
                     MERDGEPLSARPALETEGLRFLHVT          V:V[gta]       
gi|406021807|g-62890 agagggcctgccgcgaggccttcgaGGTGAGTC  Intron 1       
                     tagagactccgcctacagtgttatc <1-----[62814:62280]    
                     ggacggtccggactgcgggccgtcg                         


SPP00000100_2.0   26      GSLLATYGWYIVFSCILLYVVFQKLSARLRALRQRQLDRAAAAV 
                          GSLLATYGWYIVFS ILL+VV+Q+LSARLRA+RQRQL+R +  V 
                          GSLLATYGWYIVFSGILLFVVIQRLSARLRAMRQRQLERDSIVV 
gi|406021807|g-62282 CAGTAgtccgatgttagtagacctggacattgccagaaccccgcgtagg 
                     -1>  gcttccaggatttggtttttttagtccgtgctgagatagacttt 
                          ccggcttcgccccctcgccgctgggcccggcgggggggacattg 


SPP00000100_2.0   71                           PDVVVKRQEALAAARLKMQEELN 
                                               PD+VVKRQEALAAARLKMQEE N 
                               E:E[gaa]        PDIVVKRQEALAAARLKMQEEFN 
gi|406021807|g-62145 GGTTAGTT  Intron 2   TAGAAcgaggaccggtgggccaacggta 
                      <1-----[62144:59017]-1>  catttagaactcccgtataaata 
                                               tttttaaaataatttgggaagct 


SPP00000100_2.0   95 AQVEKHKEKLKQ                       LEEEKRRQKIEMWD 
                      + EKHKEKL+Q                       LEEEKRRQKIEMWD 
                     VKAEKHKEKLRQ                       LEEEKRRQKIEMWD 
gi|406021807|g-58945 gaggacagacacGTATGAA  Intron 3   CAGcgggaaacaagatg 
                     tacaaaaaatga<0-----[58909:50034]-0>taaaaggaatatga 
                     gacagtaggaag                       taagaaaggtaggc 


SPP00000100_2.0  121 SMQEGKSYKGNAKKPQ                       EEDSPGPSTS 
                     SMQEGKSYKGN KK Q                       EEDSPGPSTS 
                     SMQEGKSYKGNIKKRQ                       EEDSPGPSTS 
gi|406021807|g-49991 aacggaatagaaaaccGTGCTGT  Intron 4   CAGgggacgctat 
                     gtaagagaagataaga<0-----[49943:49844]-0>aaagcgcccc 
                     cgaaaaccaatcaagg                       aatctatcga 


SPP00000100_2.0  147 SV-LKRKSDRKPLRGG                          YNPLSGE 
                     S   KRK DRKPLRGG                          YNPLSGE 
                     SAPSKRKPDRKPLRGG          G:G[ggt]        YNPLSGE 
gi|406021807|g-49813 tgctacacgaactcggGGTAGGTG  Intron 5   CAGGTtacctgg 
                     ccccagacagactggg <1-----[49764:48190]-1>  aactcga 
                     atctatatcagaggac                          cctgtta 


SPP00000100_2.0  170 GGGACSWRPGRRGPSSGG                                
                     GGG+CSWRPGRRGP+SGG                                
                     GGGSCSWRPGRRGPTSGG                                
gi|406021807|g-48166 gggttttacgcagcatgg                                
                     gggcgcggcggggcccgg                                
                     accgccggtacatagtta                                


//
Making a V in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|406021807|gb|JH823440.1|:subseq(3517146,300000).pep
MERDGEPLSARPALETEGLRFLHVTVGSLLATYGWYIVFSGILLFVVIQRLSARLRAMRQ
RQLERDSIVVEPDIVVKRQEALAAARLKMQEEFNVKAEKHKEKLRQLEEEKRRQKIEMWD
SMQEGKSYKGNIKKRQEEDSPGPSTSSAPSKRKPDRKPLRGGGYNPLSGEGGGSCSWRPG
RRGPTSGG
//
>gi|406021807|gb|JH823440.1|:subseq(3517146,300000).[62890:48111].sp
ATGGAGAGAGACGGGGAGCCTCTCTCCGCGCGGCCAGCCCTTGAGACCGAGGGGCTGCGC
TTCTTGCATGTCACGGTAGGCTCCCTGCTGGCCACTTATGGCTGGTACATCGTCTTCAGC
GGTATCCTGCTCTTCGTGGTCATTCAGAGGTTGTCCGCCCGCCTGAGGGCCATGAGGCAG
CGGCAGCTGGAGCGAGACTCAATTGTTGTGGAACCTGATATTGTTGTTAAACGACAAGAA
GCTTTAGCAGCTGCTCGTCTGAAGATGCAAGAAGAGTTCAATGTGAAAGCCGAAAAGCAT
AAAGAGAAGCTAAGACAGCTTGAAGAAGAGAAAAGAAGACAGAAGATTGAAATGTGGGAC
AGCATGCAAGAAGGAAAAAGCTACAAAGGAAATATCAAAAAACGGCAGGAAGAAGATAGC
CCTGGACCTTCCACGTCATCAGCTCCCTCTAAACGTAAACCTGACAGAAAGCCATTGCGG
GGAGGCGGTTACAACCCTCTGTCTGGTGAAGGAGGCGGCTCGTGCTCCTGGAGGCCTGGA
CGCAGAGGTCCAACGTCTGGTGGA
//
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	match	62890	48113	288.61	-	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	62890	62815	0.00	-	0	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	intron	62814	62280	0.00	-	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	62279	62145	0.00	-	2	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	intron	62144	59017	0.00	-	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	59016	58910	0.00	-	2	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	intron	58909	50034	0.00	-	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	50033	49944	0.00	-	0	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	intron	49943	49844	0.00	-	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	49843	49765	0.00	-	0	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	intron	49764	48190	0.00	-	.	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
gi|406021807|gb|JH823440.1|:subseq(3517146,300000)	GeneWise	cds	48189	48113	0.00	-	2	gi|406021807|gb|JH823440.1|:subseq(3517146,300000)-genewise-prediction-1
//
