
genewise output
Score 282.77 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000091_2.0    1 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEA           
                     MA LLW L  L L     RA+RGQ    G        +A           
                     MAHLLWALPRLPLREVSARALRGQGASFGHVVRSRHRDA           
gi|406021854|gb31280 agccctgccaccccggtgcgtcgcggatgcggataccgg           
                     tcattgctcgtctgatccgctggagcgtgattgcgagac           
                     ggcccgtccgtcccggtggtggtagccttccagcacgca           


SPP00000091_2.0   40                           SLATCELPLAKSEWQKKLTPEQF 
                                               SL  CE  L+KSEWQKKLTPEQF 
                               G:G[ggg]        SLTKCEPSLSKSEWQKKLTPEQF 
gi|406021854|gb31397 GGTAGGAT  Intron 1   CAGGGtcaatgctctaagtcaacacgct 
                      <1-----[31398:49997]-1>  ctcagacctcagagaaatccaat 
                                               tgagtgattcgtggagagcagac 


SPP00000091_2.0   64 YVTREKGTEP                       PFSGIYLNNKEAGMYH 
                     YVTREKGTEP                       PFSGIYLNNKE GMYH 
                     YVTREKGTEP                       PFSGIYLNNKEPGMYH 
gi|406021854|gb50069 tgaagagagcGTAAGCT  Intron 2   CAGctagatcaaagcgatc 
                     atcgaagcac<0-----[50099:60495]-0>ctggtataaaacgtaa 
                     tcaaaaaaag                       tctactgtcggtagtc 


SPP00000091_2.0   90 CVCCDSPLF                          SEKKYCSGTGWPSF 
                     CVCCDSPLF                          SEKK+CSGTGWPSF 
                     CVCCDSPLF           S:S[agt]       SEKKFCSGTGWPSF 
gi|406021854|gb60544 tgttgacctAGGTAAGTT  Intron 3   TAGTtgaatttgagtctt 
                     gtggagctt  <2-----[60573:85780]-2> caaatgcgcggcct 
                     tactttgcc                          taggcttattgtcc 


SPP00000091_2.0  114 SEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ               
                     SEAHGTSG+DES+TGILR LDTSLGSARTEV+CKQ               
                     SEAHGTSGADESNTGILRSLDTSLGSARTEVICKQ               
gi|406021854|gb85824 tggcgatggggaaagacaacgattgtgcaggatac               
                     cacagccgcaagacgttggtacctgccgcattgaa               
                     tgtttatattatccccgatgccgaaatgagtccgg               


SPP00000091_2.0  149                        CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGP P GQRFCINSVA 
                                            CEAHLGHVFPDGPEPTGQRFCINSVA 
gi|406021854|gb85929 GTGGGTA  Intron 4   CAGtggccgcgtcggcgcagcattaaagg 
                     <0-----[85929:87384]-0>gacatgattcagcaccgagtgtagtc 
                                            tatttccgtttatgtttgatccctat 


SPP00000091_2.0  175 LKFKPRKH                                          
                     LKFKP KH                                          
                     LKFKPSKH                                          
gi|406021854|gb87463 catacaac                                          
                     tatacgaa                                          
                     agtgatac                                          


//
Making a G in phase 1 intron
Making a S in phase 2 intron
>gi|406021854|gb|JH823393.1|:subseq(8621169,300000).pep
MAHLLWALPRLPLREVSARALRGQGASFGHVVRSRHRDAGSLTKCEPSLSKSEWQKKLTP
EQFYVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS
GADESNTGILRSLDTSLGSARTEVICKQCEAHLGHVFPDGPEPTGQRFCINSVALKFKPS
KH
//
>gi|406021854|gb|JH823393.1|:subseq(8621169,300000).[31280:87486].sp
ATGGCGCACCTCCTCTGGGCTCTCCCCAGGCTTCCCCTCCGCGAGGTGTCTGCGCGGGCT
TTGCGGGGTCAAGGGGCCAGCTTTGGTCACGTCGTAAGGTCCAGACACCGGGACGCAGGG
TCTCTGACAAAGTGTGAGCCATCTCTTTCCAAGAGTGAGTGGCAAAAGAAACTGACCCCA
GAGCAATTCTATGTCACAAGAGAAAAAGGAACAGAACCGCCTTTCAGTGGAATCTATCTG
AATAACAAGGAGCCTGGAATGTATCACTGTGTATGCTGTGATAGTCCGCTCTTCAGTTCT
GAAAAGAAGTTCTGTTCTGGAACTGGTTGGCCTTCCTTCTCTGAGGCTCATGGTACATCT
GGAGCTGATGAAAGTAACACCGGCATCCTGAGAAGTCTGGACACCTCGTTAGGATCAGCT
CGGACAGAGGTTATCTGCAAGCAGTGTGAAGCTCATCTTGGCCACGTGTTTCCTGATGGA
CCTGAGCCTACTGGTCAGAGATTTTGCATCAACAGTGTAGCTCTAAAGTTTAAGCCAAGT
AAACAC
//
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	match	31280	87486	282.77	+	.	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	cds	31280	31397	0.00	+	0	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	intron	31398	49997	0.00	+	.	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	cds	49998	50098	0.00	+	2	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	intron	50099	60495	0.00	+	.	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	cds	60496	60572	0.00	+	0	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	intron	60573	85780	0.00	+	.	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	cds	85781	85928	0.00	+	1	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	intron	85929	87384	0.00	+	.	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	cds	87385	87486	0.00	+	0	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
//

genewise output
Score 22.33 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000091_2.0   87 MYHCVCC                                           
                     +YHCVCC                                           
                     LYHCVCC                                           
gi|406021854|-100190 ctctgtt                                           
                     taagtgg                                           
                     gcctctt                                           


//
>gi|406021854|gb|JH823393.1|:subseq(8621169,300000).pep
LYHCVCC
//
>gi|406021854|gb|JH823393.1|:subseq(8621169,300000).[100190:100168].sp
CTGTACCACTGTGTCTGTTGT
//
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	match	100190	100170	22.33	-	.	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
gi|406021854|gb|JH823393.1|:subseq(8621169,300000)	GeneWise	cds	100190	100170	0.00	-	0	gi|406021854|gb|JH823393.1|:subseq(8621169,300000)-genewise-prediction-1
//
