
genewise output
Score 400.32 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000082_2.0    1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSV 
                     MWR LGL LALCLLP GGTESQ+QSS CK+PPAWSIR +DPMLNSNGSV 
                     MWRRLGLTLALCLLPWGGTESQEQSSFCKRPPAWSIRGEDPMLNSNGSV 
gi|406021525|gb30000 ataccgcacgctccctggagacgcatttacccgtaacgggcacatagtg 
                     tgggtgtctctgttcgggcagaaagctgagcccggtggaacttacagct 
                     ggacgatcgtctcctgtaagcgaatcttgacatgcagaataggcgttag 


SPP00000082_2.0   50 TVVALLQASXYLCILQAS                          LEDLR 
                     TVVALLQASX+LCILQAS                          LEDLR 
                     TVVALLQASXHLCILQAS           K:R[aga]       LEDLR 
gi|406021525|gb30147 agggcccgatcctaccgtAGGTAATAA  Intron 1   TAGAtggcc 
                     cttcttacggatgttacc  <2-----[30203:30898]-2> taatg 
                     cgttctaccacgctggat                          gacga 


SPP00000082_2.0   74 VKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD 
                     +KL KEGY NISY++VNHQG +S+LKY HLK+KVSEHIPVYQQEENQTD 
                     IKLDKEGYFNISYVIVNHQGPASQLKYMHLKDKVSEHIPVYQQEENQTD 
gi|406021525|gb30915 aacgaggttaattgagaccgcgtctataccagagtgcacgtccggacag 
                     tataaagatatcatttaaagcccataatataaatcaatctaaaaaaaca 
                     aagcaactttcctcttttaatttaagcgttatgtagtttttaaaataat 


SPP00000082_2.0  123 VWTLLNGSKDDFLIYD                          CGRLVYH 
                     VWTLLNG+KDDFL+YD                          CGRLVYH 
                     VWTLLNGNKDDFLVYD           R:R[aga]       CGRLVYH 
gi|406021525|gb31062 gtactagaaggtcgtgAGGTATGTA  Intron 2   TAGAtgccgtc 
                     tgcttagaaaatttaa  <2-----[31112:33354]-2> gggttaa 
                     cgtcatacatcttatc                          ttttatt 


SPP00000082_2.0  147 LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT                  
                     LGLP+SFLTFPYVE AIKIAYCEKKCGNCS                    
                     LGLPYSFLTFPYVEAAIKIAYCEKKCGNCSFL                  
gi|406021525|gb33377 cgtctttcatctggggaaagttgaatgatttc                  
                     tgtcacttctcatacctatcagaaaggagctt                  
                     ttgtcccattatgacctgttttagatacctcg                  


SPP00000082_2.0  179                        TLKDEDFCKRVSLATVDKTVETPSPH 
                                              +DE  CK  SLA V+++ E P P  
                                            IPEDE-ICKNKSLANVEES-EDPKPQ 
gi|406021525|gb33473 GTATTTT  Intron 3   CAGacggg ataaattgagggt ggcacc 
                     <0-----[33473:35431]-0>tcaaa tgaaactcataac aacaca 
                                            ttata ctacatgatgaag gctaag 


SPP00000082_2.0  205 YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 
                     Y H HHH HGHQHLG+S  +   Q        HP+  GL+H +KHK    
                     YDHHHHHKHGHQHLGNSSHTNTSQ--------HPS-AGLYHRYKHKDHQ 
gi|406021525|gb35504 tgcccccacgccccgaatcaaatc        cct ggctcctacagcc 
                     aaaaaaaaagaaatgagcacacca        acc cgtaagaaaaaaa 
                     ctttctcgtgtgttgttttacttg        ttt atttcctgcgcca 


SPP00000082_2.0  254 RQGHPENRDMPASEDLQ                                 
                      +GHPENRDMP +E LQ                                 
                     TEGHPENRDMPGNEGLQ                                 
gi|406021525|gb35624 aggccgaagacgaggtc                                 
                     cagacaagatcgaagta                                 
                     agtctgtatgaatataa                                 


//
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|406021525|gb|JH823722.1|:subseq(143044,300000).pep
MWRRLGLTLALCLLPWGGTESQEQSSFCKRPPAWSIRGEDPMLNSNGSVTVVALLQASXH
LCILQASRLEDLRIKLDKEGYFNISYVIVNHQGPASQLKYMHLKDKVSEHIPVYQQEENQ
TDVWTLLNGNKDDFLVYDRCGRLVYHLGLPYSFLTFPYVEAAIKIAYCEKKCGNCSFLIP
EDEICKNKSLANVEESEDPKPQYDHHHHHKHGHQHLGNSSHTNTSQHPSAGLYHRYKHKD
HQTEGHPENRDMPGNEGLQ
//
>gi|406021525|gb|JH823722.1|:subseq(143044,300000).[30000:35674].sp
ATGTGGAGACGCCTGGGACTTACCCTGGCTCTCTGTCTCCTCCCTTGGGGTGGAACAGAG
AGCCAGGAACAAAGTTCCTTTTGTAAGCGACCCCCAGCTTGGAGCATACGGGGAGAAGAT
CCAATGCTGAACTCGAATGGTTCAGTGACCGTGGTTGCTCTCCTTCAAGCCAGCTGACAC
CTGTGCATTCTGCAGGCATCTAGATTGGAAGACCTGCGAATAAAACTGGACAAAGAAGGC
TATTTTAATATCTCCTATGTCATTGTTAATCATCAAGGACCTGCTTCTCAATTAAAGTAC
ATGCATCTTAAAGATAAGGTTTCAGAGCATATTCCTGTTTATCAACAAGAAGAAAATCAA
ACAGATGTCTGGACTCTCTTAAATGGAAACAAAGATGACTTTCTTGTATATGACAGATGT
GGTCGTCTTGTATATCATCTTGGTTTGCCTTACTCCTTCCTAACTTTTCCATATGTGGAA
GCCGCCATTAAGATTGCTTATTGTGAAAAGAAATGTGGAAACTGCTCTTTCCTGATTCCT
GAAGATGAAATCTGTAAAAACAAATCTTTGGCAAATGTGGAAGAATCGGAGGACCCTAAA
CCACAGTACGATCATCATCACCATCACAAGCATGGGCATCAGCATCTTGGGAATAGTTCT
CATACAAACACTTCTCAGCATCCTTCTGCAGGTCTTTATCACCGCTATAAGCACAAGGAC
CACCAAACAGAGGGTCACCCTGAGAATAGAGATATGCCAGGAAATGAAGGTTTACAA
//
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	match	30000	35674	407.31	+	.	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	cds	30000	30202	0.00	+	0	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	intron	30203	30898	0.00	+	.	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	cds	30899	31111	0.00	+	1	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	intron	31112	33354	0.00	+	.	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	cds	33355	33472	0.00	+	1	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	intron	33473	35431	0.00	+	.	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	cds	35432	35674	0.00	+	0	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
//

genewise output
Score 20.70 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000082_2.0  207 HEHHHNHGHQ                                        
                     H HHH+H H+                                        
                     HNHHHHHLHE                                        
gi|406021525|-113371 cacccccccg                                        
                     aaaaaaataa                                        
                     tcccctccta                                        


//
>gi|406021525|gb|JH823722.1|:subseq(143044,300000).pep
HNHHHHHLHE
//
>gi|406021525|gb|JH823722.1|:subseq(143044,300000).[113371:113340].sp
CATAACCACCACCACCATCACCTCCATGAA
//
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	match	113371	113342	20.70	-	.	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
gi|406021525|gb|JH823722.1|:subseq(143044,300000)	GeneWise	cds	113371	113342	0.00	-	0	gi|406021525|gb|JH823722.1|:subseq(143044,300000)-genewise-prediction-1
//
