
genewise output
Score 516.36 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000052_2.0    1 MKTAENIRGTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWA 
                     MK  E   G GS+G +K GLCVLCGLPAAGK+TFARAL HRL+QE+GWA 
                     MKAGEEASGPGSEGQQKLGLCVLCGLPAAGKTTFARALGHRLRQERGWA 
gi|406021886|gb30000 aagggggagcgaggccacgttgctgccgggaaatgcgcgcccccgcgtg 
                     tacgaacggcggagaaatgtgttggtcccgacctcgctgagtgaagggc 
                     ggccgaccagccagggagagccgccgtaaaggctagccccggggggtgt 


SPP00000052_2.0   50 IGVVAYDDVMPDAFLAGARARPA                       PSQ 
                     +GVV YDDVMPDAFL  A  RP                        PSQ 
                     VGVVVYDDVMPDAFLDEASLRPL                       PSQ 
gi|406021886|gb30147 gggggtgggacggtcgggatcctGTCAGTA  Intron 1   TAGctc 
                     tgtttaaattcacttaacgtgct<0-----[30216:30505]-0>cca 
                     cagacctccggctcccgtcagag                       aca 


SPP00000052_2.0   76 WKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLI 
                     WKLLRQEL+KYL+ FLMAVINGC MS PPNRTEAMWEDFITCLKDQDL+ 
                     WKLLRQELMKYLDCFLMAVINGCPMSAPPNRTEAMWEDFITCLKDQDLL 
gi|406021886|gb30515 tatcccgcaatcgtttaggaagtcatgccaaaggatggtaattagcgcc 
                     gattgaattaatagtttcttaggctccccagcactgaattcgtaaaatt 
                     gagtagagggcgtctggtctcgtggtcaccatacggacttccagtatag 


SPP00000052_2.0  125 FSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARK     
                      S+A EAQ CYLLTK AVSR L+LVLDDNFYYQSMRYEVYQLARK     
                     SSSAREAQPCYLLTKIAVSRSLLLVLDDNFYYQSMRYEVYQLARK     
gi|406021886|gb30662 tttgcggccttccaaaggtattctgtggatttcaaatggtccgca     
                     ccccgacacgattcatctcgctttttaaataaagtgaataatcga     
                     tcagtgcgtcccaagactcatgtgtgtcctttacgataccggtga     


SPP00000052_2.0  170                           SLGFCQLFLDCPLETCLQRNGQR 
                                               SLGFCQLFLDCPLETCLQRNGQR 
                               Y:Y[tat]        SLGFCQLFLDCPLETCLQRNGQR 
gi|406021886|gb30797 TGTAATTA  Intron 2   CAGATttgttccttgtccgatccaagca 
                      <1-----[30798:31037]-1>  ctgtgatttagctacgtagagag 
                                               aactcgctattttgctaggtcgg 


SPP00000052_2.0  194 PQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEA        
                     P+ALP ETIHLMGRK+EKPNPEKNAWEHNSLTI SPAC+SE         
                     PRALPAETIHLMGRKIEKPNPEKNAWEHNSLTIQSPACSSEL        
gi|406021886|gb31109 cagccggaaccagaaagacacgaagtgcaacaacacgtttgc        
                     cgctccactattggataacacaaacgaaagtctagccgccat        
                     agagatgctcggaagaagcctgattgaccccatgtaatttac        


SPP00000052_2.0  236                           LEVTDLLLTALENPVKYAEDNME 
                                               LEVTDLLLTALE+PVK  EDN E 
                                S:S[agc]       LEVTDLLLTALESPVKNVEDNRE 
gi|406021886|gb31235 AGGTATCCA  Intron 3   TAGCtggagttcagtgacgaagggacg 
                       <2-----[31237:32765]-2> tatcatttcctagctaataaaga 
                                               gggttagtttgatcaattgctga 


SPP00000052_2.0  260 QK                       DTDRIICSTNILHKTDQTLRRIVS 
                      K                       +TDR+ICSTN+LH+ DQ LRRI+S 
                     AK                       ETDRLICSTNVLHQVDQMLRRIIS 
gi|406021886|gb32836 gaGTAAGTC  Intron 4   TAGgagacattaagcccggcaccaaat 
                     ca<0-----[32842:33362]-0>acagttgccattaataattggttc 
                     gg                       aacagtttattttattggcaatct 


SPP00000052_2.0  286 QTMKEAKG                                          
                     QTMKEAKG                                          
                     QTMKEAKG                                          
gi|406021886|gb33435 caaaggag                                          
                     actaacag                                          
                     gaggaaat                                          


//
Making a Y in phase 1 intron
Making a S in phase 2 intron
>gi|406021886|gb|JH823361.1|:subseq(253980,300000).pep
MKAGEEASGPGSEGQQKLGLCVLCGLPAAGKTTFARALGHRLRQERGWAVGVVVYDDVMP
DAFLDEASLRPLPSQWKLLRQELMKYLDCFLMAVINGCPMSAPPNRTEAMWEDFITCLKD
QDLLSSSAREAQPCYLLTKIAVSRSLLLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLD
CPLETCLQRNGQRPRALPAETIHLMGRKIEKPNPEKNAWEHNSLTIQSPACSSELSLEVT
DLLLTALESPVKNVEDNREAKETDRLICSTNVLHQVDQMLRRIISQTMKEAKG
//
>gi|406021886|gb|JH823361.1|:subseq(253980,300000).[30000:33458].sp
ATGAAGGCCGGCGAGGAAGCCAGCGGACCGGGCAGCGAAGGGCAGCAGAAACTGGGATTG
TGCGTCCTGTGCGGCCTGCCTGCAGCAGGAAAGACGACCTTTGCACGGGCCCTCGGCCAC
CGGCTGCGGCAGGAGCGGGGTTGGGCTGTCGGAGTGGTAGTCTACGATGACGTCATGCCG
GACGCTTTCCTCGACGAGGCTAGCTTACGGCCATTGCCATCCCAATGGAAATTGCTTCGA
CAGGAACTGATGAAGTACCTGGATTGCTTTTTGATGGCTGTCATTAACGGGTGTCCGATG
TCTGCCCCACCCAACAGAACTGAAGCCATGTGGGAAGACTTTATTACCTGCTTAAAGGAT
CAAGATCTACTGTCTTCCTCAGCGCGTGAGGCCCAGCCTTGCTACCTCCTAACAAAGATA
GCCGTTTCCAGATCTTTGCTTTTGGTTTTGGATGACAACTTTTATTATCAAAGCATGAGA
TATGAAGTCTACCAGCTGGCTCGGAAATATTCATTAGGCTTTTGCCAGCTCTTTTTAGAT
TGTCCTCTTGAGACCTGTCTACAGAGGAATGGCCAGAGGCCAAGGGCACTGCCAGCTGAG
ACCATTCACCTGATGGGAAGAAAGATAGAAAAGCCCAACCCTGAGAAAAATGCTTGGGAA
CACAACAGCCTCACAATTCAGAGTCCAGCATGTTCTTCTGAACTCAGCTTGGAGGTGACT
GATTTATTGCTTACTGCTTTGGAAAGTCCCGTAAAAAATGTTGAGGACAATCGGGAAGCG
AAGGAAACAGACAGACTGATTTGTTCTACAAATGTTCTTCATCAAGTTGATCAGATGCTC
CGAAGAATTATCTCTCAGACAATGAAGGAAGCAAAAGGT
//
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	match	30000	33458	516.36	+	.	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	cds	30000	30215	0.00	+	0	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	intron	30216	30505	0.00	+	.	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	cds	30506	30797	0.00	+	0	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	intron	30798	31037	0.00	+	.	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	cds	31038	31236	0.00	+	2	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	intron	31237	32765	0.00	+	.	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	cds	32766	32841	0.00	+	1	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	intron	32842	33362	0.00	+	.	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	cds	33363	33458	0.00	+	0	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
//

genewise output
Score 21.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000052_2.0   77 KLLRQELLKYLEYFLMAVINGCQMS                         
                     K++   +LK+  YF ++++ GC ++                         
                     KIISLIILKFKMYFYQSILKGCHIA                         
gi|406021886|-298875 aaaataatataatttcaacagtcag                         
                     attgttttatatataagttaggatc                         
                     atatgtagatagtttacaaagctaa                         


//
>gi|406021886|gb|JH823361.1|:subseq(253980,300000).pep
KIISLIILKFKMYFYQSILKGCHIA
//
>gi|406021886|gb|JH823361.1|:subseq(253980,300000).[298875:298799].sp
AAAATTATAAGTTTGATTATATTGAAATTTAAAATGTATTTTTATCAAAGCATACTAAAA
GGGTGCCATATAGCA
//
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	match	298875	298801	21.43	-	.	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
gi|406021886|gb|JH823361.1|:subseq(253980,300000)	GeneWise	cds	298875	298801	0.00	-	0	gi|406021886|gb|JH823361.1|:subseq(253980,300000)-genewise-prediction-1
//
