
genewise output
Score 402.57 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000040_2.0    1 MVAATVAAAWLLLWAAACAQQEQDFYDFKAVNIRGKLVSLEKYRGS    
                     MVAA VAAAWLLL AAA  Q+EQDFYDFKAVNIRGKLVSLEKYRGS    
                     MVAAVVAAAWLLLSAAAAVQREQDFYDFKAVNIRGKLVSLEKYRGS    
gi|406021965|gb49943 aggggggggtccctgggggccgcgttgtaggaacgacgtcgatcgt    
                     ttccttcccgtttccccctagaaataatactatggattctaaaggc    
                     ggtcgggggggcggcgctggggacctccgtcccgcaagtgggctcg    


SPP00000040_2.0   47                        VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
                                            VSLVVNVASECGFTDQHYRALQQLQR 
gi|406021965|gb50081 GTGAGTG  Intron 1   CAGgtcggaggagtgtagcctcgcccccc 
                     <0-----[50081:59483]-0>tctttatcgaggtcaaaagctaatag 
                                            gcgagcgccgcctacgccacgggagg 


SPP00000040_2.0   73 DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSK+AVT 
                     DLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAVT 
gi|406021965|gb59562 gcgccctagcgtctactgccgcgaaagagatgccatagttcataaggga 
                     atgcaatattctcgaatgaaacagaaatagtcggcagtctcttgatctc 
                     cgctccccgtcccccgtcgggtcccggtgctccacctctccgtcagact 


SPP00000040_2.0  122 GTGAHPAFKYLA                          TSGKEPTWNFW 
                     GTGAHPAFKYL                           TSGKEPTWNFW 
                     GTGAHPAFKYLT          Q:Q[cag]        TSGKEPTWNFW 
gi|406021965|gb59709 gaggccgtatcaCGTGAGTC  Intron 2   TAGAGatgagcatatt 
                     gcgcacctaatc <1-----[59746:66156]-1>  ccgaaccgatg 
                     cttctttcacgc                          ttgggccgccg 


SPP00000040_2.0  146 KYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL        
                     K+LVAPDGKV GAWDPTVSVEE+RPQI ALVRKLIL KRE+L        
                     KFLVAPDGKVAGAWDPTVSVEEIRPQINALVRKLILRKREEL        
gi|406021965|gb66192 attggcggaggggtgcagtgggaaccaagcgaacaccacggt        
                     atttccagatcgcgacctctaatgcatacttgatttgagaat        
                     acagcatgggtgtgcaagagggcgcgctatgggccagaaaaa        


//
Making a Q in phase 1 intron
>gi|406021965|gb|JH823282.1|:subseq(17377986,300000).pep
MVAAVVAAAWLLLSAAAAVQREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFT
DQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKVAV
TGTGAHPAFKYLTQTSGKEPTWNFWKFLVAPDGKVAGAWDPTVSVEEIRPQINALVRKLI
LRKREEL
//
>gi|406021965|gb|JH823282.1|:subseq(17377986,300000).[49943:66317].sp
ATGGTGGCTGCCGTGGTGGCGGCGGCGTGGCTGCTCCTGTCGGCCGCGGCCGCTGTGCAG
CGGGAGCAAGACTTCTATGACTTCAAGGCTGTCAACATCCGGGGCAAACTAGTGTCTCTG
GAGAAGTACCGTGGCTCGGTGTCCCTGGTAGTGAACGTGGCCAGCGAGTGCGGCTTTACA
GACCAGCACTACCGAGCCCTGCAGCAGCTACAGCGGGACCTGGGCCCTCACCACTTCAAC
GTGCTTGCCTTCCCCTGCAACCAGTTTGGCCAGCAGGAGCCTGACAGCAACAAGGAGATT
GAGAGCTTTGCCCGCCGAACCTACAGTGTCTCTTTCCCCATGTTTAGCAAAGTGGCAGTC
ACTGGCACTGGTGCCCATCCTGCTTTCAAATACCTGACCCAGACTTCTGGGAAGGAGCCC
ACCTGGAACTTCTGGAAATTCTTAGTGGCCCCAGATGGGAAGGTGGCTGGGGCTTGGGAC
CCAACAGTGTCAGTGGAGGAGATCAGGCCCCAGATCAATGCACTTGTGAGGAAGCTCATC
CTACGGAAACGAGAAGAATTA
//
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	match	49943	66317	402.57	+	.	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	cds	49943	50080	0.00	+	0	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	intron	50081	59483	0.00	+	.	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	cds	59484	59745	0.00	+	0	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	intron	59746	66156	0.00	+	.	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	cds	66157	66317	0.00	+	2	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
//

genewise output
Score 27.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000040_2.0  132 LAQTSGKEPTWNFWKYLVA                               
                     L  +S  EP+ NFWK+LVA                               
                     LHPSSSSEPSLNFWKFLVA                               
gi|406021965|-293676 cccatttgcatattatcgg                               
                     tacgcccacgtatgatttc                               
                     ttcccttactgtcggctta                               


//
>gi|406021965|gb|JH823282.1|:subseq(17377986,300000).pep
LHPSSSSEPSLNFWKFLVA
//
>gi|406021965|gb|JH823282.1|:subseq(17377986,300000).[293676:293618].sp
CTTCATCCCAGCTCCTCTTCTGAACCCAGTTTGAATTTCTGGAAGTTCCTTGTTGCA
//
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	match	293676	293620	27.29	-	.	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
gi|406021965|gb|JH823282.1|:subseq(17377986,300000)	GeneWise	cds	293676	293620	0.00	-	0	gi|406021965|gb|JH823282.1|:subseq(17377986,300000)-genewise-prediction-1
//
