
genewise output
Score 337.69 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0    1 MSLGRLCRLLKPALLCGALAAPGLAGTM                      
                     MS  RLCRLLKPALLCG++A PGLA TM                      
                     MSFSRLCRLLKPALLCGSIAVPGLASTM                      
gi|406021582|gb49054 aatacctcccacgcctgtaggcgtgaaaGTAAACG  Intron 1     
                     tgtggtggttaccttggctctcgtcgct<0-----[49138:49999]  
                     gccctcccgggggggtatacgacacccg                      


SPP00000026_2.0   29    CASRDDWRCARSMHEFSAKDIDGHMVNLDKY                
                        CASRDDWRCARSMHEFSAKDIDG MV+LDKY                
                        CASRDDWRCARSMHEFSAKDIDGRMVSLDKY                
gi|406021582|gb49997 CAGtgtcggtctgctacgttgagaggcagacgat                
                     -0>gccgaagggcgctaatccaataggttgtaaa                
                        tgcctcgtcctcgtacgcgcccgcggcgcgc                


SPP00000026_2.0   60                           GFVCIVTNVASQXGKTEVNYTQL 
                                               GFVCIVTNVASQXGKT+VNYTQL 
                                R:R[cgg]       GFVCIVTNVASQXGKTDVNYTQL 
gi|406021582|gb50093 CGGTGTGTA  Intron 2   CAGGgtgtagaaggtctgaaggatacc 
                       <2-----[50095:50191]-2> gttgttcatccaggacataacat 
                                               ccgcctccgcgaacaacacttga 


SPP00000026_2.0   84 VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
                     VDLHARYAECGLRILAFPCNQFGKQ                       E 
gi|406021582|gb50262 ggccgctggtgtcacgtctactgacGTGGGTA  Intron 3   CAGg 
                     tatacgacaggtgttctcgaatgaa<0-----[50337:50506]-0>a 
                     ccgccattgctaccgtccccgtggg                       a 


SPP00000026_2.0  110 PGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILG 
                     PGSN EIKEFAAGYNVKFDM+SK+CVNGDDAHPLWKWMK+QPKG+GILG 
                     PGSNAEIKEFAAGYNVKFDMYSKVCVNGDDAHPLWKWMKVQPKGRGILG 
gi|406021582|gb50510 cgaaggaagtgggtagatgataagtgaggggccctataagccagcgatg 
                     cggacataatccgaatatatagatgtagaacactgagtatacagggttg 
                     tgctcgtagctcctccactgtcgctgttccccggggggacgtgggccgg 


SPP00000026_2.0  159                           AIKWNFTK                
                                               AIKWNFTK                
                                N:N[aat]       AIKWNFTK                
gi|406021582|gb50657 AAGTGAGTG  Intron 4   TAGTgaatataa                
                       <2-----[50659:50746]-2> ctagatca                
                                               ccagtccg                


SPP00000026_2.0  168                        FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEPL       
                                            FLIDKNGCVVKRYGPMEEPL       
gi|406021582|gb50772 GTAAGGG  Intron 5   CAGtcagaagtggactgcaggcc       
                     <0-----[50772:50886]-0>tttaaaggttagagctaact       
                                            ccccgcctggggctcggacg       


SPP00000026_2.0  188                        VIEKDLPHYF                 
                                            VIEKDLP Y+                 
                                            VIEKDLPSYL                 
gi|406021582|gb50947 GTAAGTG  Intron 6   CAGgagagccatc                 
                     <0-----[50947:51022]-0>ttaaatcgat                 
                                            gcggcgcccc                 


//
Making a R in phase 2 intron
Making a N in phase 2 intron
>gi|406021582|gb|JH823665.1|:subseq(1009262,300000).pep
MSFSRLCRLLKPALLCGSIAVPGLASTMCASRDDWRCARSMHEFSAKDIDGRMVSLDKYR
GFVCIVTNVASQXGKTDVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNAEIKEFA
AGYNVKFDMYSKVCVNGDDAHPLWKWMKVQPKGRGILGNAIKWNFTKFLIDKNGCVVKRY
GPMEEPLVIEKDLPSYL
//
>gi|406021582|gb|JH823665.1|:subseq(1009262,300000).[49054:51052].sp
ATGAGCTTCAGCCGTCTCTGCCGCCTGCTGAAGCCGGCGCTGCTGTGTGGATCTATAGCC
GTGCCAGGCTTAGCCAGCACCATGTGTGCGTCCCGCGATGACTGGCGTTGCGCCCGTTCC
ATGCATGAATTCTCGGCCAAGGACATCGACGGGCGCATGGTGAGCCTGGACAAGTACCGG
GGCTTCGTGTGCATCGTTACCAACGTGGCCTCGCAATGAGGCAAAACAGACGTAAACTAT
ACTCAGCTAGTCGACCTGCACGCCCGATATGCTGAGTGCGGTTTACGCATCCTGGCTTTC
CCCTGCAACCAGTTTGGGAAGCAGGAACCTGGGAGCAATGCCGAGATTAAAGAGTTCGCT
GCCGGCTATAACGTCAAATTCGATATGTATAGCAAGGTCTGTGTGAATGGTGACGACGCC
CACCCGCTGTGGAAGTGGATGAAAGTCCAGCCTAAGGGGCGGGGCATCTTGGGGAATGCC
ATCAAATGGAATTTCACCAAGTTCCTCATCGACAAGAACGGCTGTGTGGTGAAGCGGTAC
GGTCCCATGGAGGAACCCCTGGTGATCGAGAAGGACCTGCCCAGCTACCTC
//
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	match	49054	51052	337.69	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	49054	49137	0.00	+	0	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	intron	49138	49999	0.00	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	50000	50094	0.00	+	0	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	intron	50095	50191	0.00	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	50192	50336	0.00	+	1	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	intron	50337	50506	0.00	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	50507	50658	0.00	+	0	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	intron	50659	50746	0.00	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	50747	50771	0.00	+	1	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	intron	50772	50886	0.00	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	50887	50946	0.00	+	0	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	intron	50947	51022	0.00	+	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	51023	51052	0.00	+	0	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
//

genewise output
Score 19.25 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_2.0  161 IKWNFTKFL                                         
                     I+WNF KF+                                         
                     IQWNFMKFM                                         
gi|406021582|-286088 actataata                                         
                     tagattatt                                         
                     aagccgacg                                         


//
>gi|406021582|gb|JH823665.1|:subseq(1009262,300000).pep
IQWNFMKFM
//
>gi|406021582|gb|JH823665.1|:subseq(1009262,300000).[286088:286060].sp
ATACAATGGAACTTCATGAAATTCATG
//
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	match	286088	286062	19.25	-	.	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
gi|406021582|gb|JH823665.1|:subseq(1009262,300000)	GeneWise	cds	286088	286062	0.00	-	0	gi|406021582|gb|JH823665.1|:subseq(1009262,300000)-genewise-prediction-1
//
